BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55440.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215 1640 0.0
Ahg950447 jgi|Araly1|950447|scaffold_802334.1 928 0.0
Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218 926 0.0
> Ahg331872 jgi|Araly1|331872|fgenesh1_pm.C_scaffold_8001215
Length=1098
Score = 1640 bits (888), Expect = 0.0
Identities = 1030/1100 (94%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 26 ATGGCTCTGTTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTTC 85
||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1 ATGGCGCTGTTTTTCAGCCGAATCTCAAAGCTCTCTGTACGCAAGAACAATGCTCGTTTC 60
Query 86 TTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGGGTCT 145
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTCTCATCATTGCCTCAGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGAGTCT 120
Query 146 CCAGAGGAGGGCCTAATCGTGCATCACAAGTTATTCGAACCGGCTACGGaaaaaaaaGTG 205
|||||||||||||||||||||||||| ||||||||||| ||| | || ||||| ||||||
Sbjct 121 CCAGAGGAGGGCCTAATCGTGCATCAAAAGTTATTCGACCCGACAACAGAAAAGAAAGTG 180
Query 206 TACGGCAATGAGAAGAAGTATCCCAAAGAGCTTCATGGAGCTCCGCTTCTGGGAGCATCG 265
||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 181 TACAGCAAGGAGAAGAAGTATCCCAAAGAGCTTCGTGGAGCTCCTCTTCTGGGAGCATCG 240
Query 266 AAAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACGGATCTGTAC 325
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAAGGTTGGGTCGCTTCTTTCAAGGAGAAAGACATTACCGTGCATCTCACGGATCTGTAC 300
Query 326 AAGCCTTGTGTCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCTC-GACTATAA 384
||||||||||||||||||||| ||||||||||||||||||||||| | || || |||||
Sbjct 301 AAGCCTTGTGTCTCATCTCCACGAGTCATATCATTACCATCACTC-CGGTCTGAGTATAA 359
Query 385 ACCCGCAACTCATGCCACGGAAGTGTGTCTCTCTTCGTCTGATCCTGTCCAAGACGACTA 444
|||| || || ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 ACCCTCATCTTATGCCACCGAAGTGTGTCTCTCTTCTTCTGATCCTGTCCAAGACGACTA 419
Query 445 TTACGTGGCTGCAAAGTTCAATGACTATCACGTAAGTGTATGTAGGCCTCGTTGGGACTC 504
||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 420 TTATGTGGCTGCAAAGTTCAATGACTATCACGTAAGCGTATGTAGGCCTCGACGGGACTC 479
Query 505 TGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAGCTCATGTACTC 564
||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 480 TGAGTGGACTCACAACAAGACCGGTTACACTCTTTTACCAGCCTCTGAGCTCATGTTCTC 539
Query 565 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATGGGTTCTCTGTA 624
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAAGGTCTCTACATGGGTTCTCTGTA 599
Query 625 TCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 684
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCAGTAACAACGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 659
Query 685 TCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCACTTAGTGGATTC 744
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 660 TCCAGAGGCAGGTTGGGAGATGTTAGATAAATGTTCCATGACCAACCACTTAGTGGAATC 719
Query 745 TCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCACAAAGAGGACGA 804
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TCCCTGTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTCTTCACAAAGAGGACGA 779
Query 805 AGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGTCTTTAGGCAAGA 864
||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 780 AGATGGGGATTTGGAATTTATCCACAGCAGTACTAAGCGGTTCATGGTCTTTAGGCAAGA 839
Query 865 TGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTGG 924
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 840 TGGGACGAGCAAAGACTTTTGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTAG 899
Query 925 CAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCCAGGGCTCAAACCTAACTCCAT 984
| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 900 CGGGAGTGAAGCCTTCTGTGTCACGGCAAGCCTGTCCCCGGGGCTCAAACCTAACTCCAT 959
Query 985 CTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGTTCC-T 1043
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 960 CTATTACCTTGGCCCTAGACTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGT-CCAT 1018
Query 1044 TCACGTTCGATCGCTTTGGTAAACCCTCGCTTGTTGTCCCTTACTGGATCCATTCGACAT 1103
||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||| |
Sbjct 1019 TCAAGTTCGATCGCTTTGGTAAACCCTCACTGGTCGTCCCTTTCTGGATCCATTCGACCT 1078
Query 1104 CTTCTCTGAGCTCTAGCTAG 1123
|||||||||| |||||||||
Sbjct 1079 CTTCTCTGAGTTCTAGCTAG 1098
> Ahg950447 jgi|Araly1|950447|scaffold_802334.1
Length=1126
Score = 928 bits (502), Expect = 0.0
Identities = 884/1066 (83%), Gaps = 35/1066 (3%)
Strand=Plus/Plus
Query 22 AAATATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTC 80
||| ||||||||| ||| ||||||| ||| | ||| |||||||||||| |||||||||
Sbjct 17 AAAAATGGCTCTGTTTC-TCAGCCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTC 75
Query 81 GTTTCTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAG 140
||||||||||||||||||| | || ||| | ||| | || | |||||||||| |||
Sbjct 76 GTTTCTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTGGGAG 135
Query 141 GGTCTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGaaaaa 199
|||||| |||||| |||| | | | |||| |||||| || ||| | || ||| |
Sbjct 136 AGTCTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAG 191
Query 200 aaaGTGTACGGCAATGAGAAGAAGTA-TCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC- 254
| |||||| |||| ||||||| | | |||| ||| ||| || |||| || || | ||
Sbjct 192 ACAGTGTATAGCAAAGAGAAGACG-ATTCCC-AAGAAGC-TCAATGG-GCAACCTC-TCG 246
Query 255 TGGGAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTC 313
|||||||||| | |||||||| | |||| | | || | |||||| ||| |||||| ||
Sbjct 247 TGGGAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATC 305
Query 314 ACGGATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAA 372
|||||| |||||||||| || | |||||||| ||| ||| |||||||| || | ||||
Sbjct 306 ACGGATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA 360
Query 373 GCTCGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTG 431
| | | ||||||| |||| ||||| || || ||||| | ||||||| ||||||||||
Sbjct 361 --TTGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTG 417
Query 432 TCCAAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATCACG-TAAGTGTATGTAGG 490
|||||||||||| || ||||||||||||||| | || |||| | ||||||||||||||
Sbjct 418 TCCAAGACGACTTTTCCGTGGCTGCAAAGTTTGACGAGTATC-GGCTAAGTGTATGTAGG 476
Query 491 CCTCGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCT 550
||| |||||||||| | |||||||||| |||||| | ||| ||||||||||||||||
Sbjct 477 CCTTATTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCT 536
Query 551 GAGCTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTAC 610
|| |||||||| || ||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct 537 GATCTCATGTATTCAAAGAGAGACAAAGTCTTTTACTTTACCAGTTTTAAGGGTAACTAC 596
Query 611 ATGGGTTC-TCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAG 669
|||| ||| | || |||||| || || |||| | ||||| || | |||||||| |
Sbjct 597 ATGGCTTCGT-TGGATCTCACCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCG 655
Query 670 AAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAA 729
||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 656 AAACCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCA 715
Query 730 TCACTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTAT 789
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 716 CCACTTAGTGGAGTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGCAT 775
Query 790 TCACAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCAT 849
||||||||||||| |||||||||||||||||| | |||||||||| || |||||||||||
Sbjct 776 TCACAAAGAGGACAAAGATGGGGATTTGGAATTTATCCACAGCAATACCAAGCGGTTCAT 835
Query 850 GGTCTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCT 909
| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 836 GATCTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCT 895
Query 910 CTGCATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGC 968
|||||||||||| | |||||||||||||||||| || ||||||| ||||||| ||| |
Sbjct 896 TTGCATCTTCCTTAGTAAGAGTGAAGCCTTCTGTCTCTCGGCAAGCATGTACCCTAGG-C 954
Query 969 TCAAACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTG 1028
||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||
Sbjct 955 TCAAACCTAACTCCATCTATTACATTGGCCCTAGACTTGGTTCTTACAATCTGGCTTCTG 1014
Query 1029 GTACAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074
|||| || || ||||||| ||||||||| ||||| | ||||||||
Sbjct 1015 GTACGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1060
> Ahg917467 jgi|Araly1|917467|Al_scaffold_0008_2218
Length=1086
Score = 926 bits (501), Expect = 0.0
Identities = 882/1063 (83%), Gaps = 37/1063 (3%)
Strand=Plus/Plus
Query 26 ATGGCTCTG-TTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTT 84
||||||||| ||| ||| ||| ||| | ||| |||||||||||| |||||||||||||
Sbjct 1 ATGGCTCTGTTTC-TCAACCGCGTCTTGACGCTCTCTGGACGCAGGGACAATGCTCGTTT 59
Query 85 CTTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAG-TTGCGAGGGT 143
|||||||||||||| | || ||| | ||| | || | ||||||| ||| ||| ||
Sbjct 60 TTTCTCATCATTGCCGCAGTTCCCGTATTTGCTAATGGGCGGTAAGAAGTTTG-GAGAGT 118
Query 144 CTCCAGAGGAGGGCCTAATC-GTGCATCACAAGTTATTCGAACCGGCTACGGaaaaaaaa 202
|||| |||||| |||| | | | |||| |||||| || ||| | || ||| | | |
Sbjct 119 CTCC---GGAGGGTAAAATCAG-GAAGCACAGGTTATTTGATCCGACAACTGAAGAGACA 174
Query 203 GTGTACGGCAATGAGAAGAAGTA-TCCCAAAG-AGCTTC-ATGGAGC-TCCGCTTC-TGG 257
||||| |||| ||||||| | | |||| ||| ||| || |||| || || | || |||
Sbjct 175 GTGTATAGCAAAGAGAAGACG-ATTCCC-AAGAAGC-TCAATGG-GCAACCTC-TCGTGG 229
Query 258 GAGCATCGA-AAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACG 316
||||||| | |||||||| | |||| | | || | |||||| ||| |||||| |||||
Sbjct 230 GAGCATC-ACAAGGTTGGATAGCTTCTCTGGAGAACAAAGACCTTACCGTGCATATCACG 288
Query 317 GATCTGTACAAGCCTTGTG-TCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCT 375
||| |||||||||| || | |||||||| ||| ||| |||||||| || | |||| |
Sbjct 289 GATGTGTACAAGCCATG-GCTCTCATCTTCAAAAGTAATATCATTGCC-T---TCAA--T 341
Query 376 CGACTATAAACCCGCAACTCATGCCACGGA-AGTGTGTCTCTCTTCGTCTGATCCTGTCC 434
| | ||||||| |||| ||||| || || ||||| | ||||||| |||||||||||||
Sbjct 342 TGGGTTTAAACCCTCAACACATGCAAC-GAGAGTGTCTTTCTCTTCTTCTGATCCTGTCC 400
Query 435 AAGACGACTATTACGTGGCTGCAAAGTTCAATGACTATCACG-TAAGTGTATGTAGGCCT 493
||||||||| || |||||||||||||||| | || |||| | |||||||||||||||||
Sbjct 401 AAGACGACTTTTCCGTGGCTGCAAAGTTCGACGAGTATC-GGCTAAGTGTATGTAGGCCT 459
Query 494 CGTTGGGACTCTGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAG 553
||||||||||| | |||||||||| |||||| | ||| ||||||||||||||||||
Sbjct 460 TGTTGGGACTCTAAGTGGACTCACATCGAGACAGCTTATTCTCTTTTACCAGCCTCTGAT 519
Query 554 CTCATGTACTCCAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATG 613
|||||||| |||||||||||||||| |||| ||||||| |||||||||||| |||||||
Sbjct 520 CTCATGTATTCCAAGAGAGACAAAGTCTTCTACTTTACCAGTTTTAAGGGTAACTACATG 579
Query 614 GGTT-CTCTGTATCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAA 672
| || || || ||||||| || || |||| | ||||| || | |||||||| ||||
Sbjct 580 GCTTCCT-TGGATCTCAGCAACAACTTCGAGCCCGAGTATCAACACTTACGCCTTCGAAA 638
Query 673 CCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCA 732
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| | ||
Sbjct 639 CCTGCCTAAGATCCCAGAGGTAGGTTGGGAGATGTTGGATAAATGTTTCATGACCCACCA 698
Query 733 CTTAGTGGATTCTCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCA 792
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 699 CTTAGTGGAGTCTCCCTCTGGTGAAATTTTCTTCATCAAGTGGTATACACAGTGCATTCA 758
Query 793 CAAAGAGGACGAAGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGT 852
|||||||||| |||||||||||||||||| | ||||||||| || |||||||||||| |
Sbjct 759 CAAAGAGGACAAAGATGGGGATTTGGAATATATCCACAGCAGTACCAAGCGGTTCATGAT 818
Query 853 CTTTAGGCAAGATGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTG 912
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 819 CTTTAGGCAAGATGGGATGAGCAAAGACTTTTGTTACACGGAAGATATTGGAGATCTCTG 878
Query 913 CATCTTCCTTGGCAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCC-AGGGCTCA 971
|||||||||| | ||||||||||||||||| || ||||||| |||||||| ||| ||||
Sbjct 879 CATCTTCCTTAGTGAGAGTGAAGCCTTCTGTCTCTCGGCAAGCTTGTACCCTAGG-CTCA 937
Query 972 AACCTAACTCCATCTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTA 1031
|||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||
Sbjct 938 AACCTAACTCCATCTATTACATTGGTCCTAGACTTGGTTCTTACGATCTGGCTTCTGGTA 997
Query 1032 CAAACAGTTCCTTCACGTTCGATCGCTTTGGTAAACCCTCGCT 1074
| || || ||||||| ||||||||| ||||| | ||||||||
Sbjct 998 CGGACCGTCCCTTCACCTTCGATCGCCTTGGTGATCCCTCGCT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5