BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55450.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495628 jgi|Araly1|495628|fgenesh2_kg.8__1444__AT5G55450.1 821 0.0
Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1 231 4e-60
> Ahg495628 jgi|Araly1|495628|fgenesh2_kg.8__1444__AT5G55450.1
Length=596
Score = 821 bits (444), Expect = 0.0
Identities = 560/613 (91%), Gaps = 19/613 (3%)
Strand=Plus/Plus
Query 1 GTGAGTCTACCTTGTACTAGCTCTCACTTCTCATTAATCTTTCCTTGTATAATAAGCTCA 60
|||||||||||||||| |||||||||||| ||||||| | || | | |||||||||||||
Sbjct 1 GTGAGTCTACCTTGTATTAGCTCTCACTTATCATTAA-CGTTGC-TATATAATAAGCTCA 58
Query 61 TTACATGTAAGAGTTTCACATATCACAACAGAGTTGAGTGAGAAAGAATAAGGGATTAGA 120
||||||||||||| |||||||||||||| |||||||| ||| || | || | | |
Sbjct 59 TTACATGTAAGAGCTTCACATATCACAATAGAGTTGA--GAG--AG-A-AA--G---A-A 106
Query 121 AAAAGAGAGAATGGGTAAGGACAACACCAGAATCCTCATGCAATTTTCAGCTCTCGCGAT 180
|| |||||||||||||||| ||||||||||| |||||||||||||| ||| ||| || ||
Sbjct 107 AAGAGAGAGAATGGGTAAGAACAACACCAGATTCCTCATGCAATTTGCAGTTCTTGCAAT 166
Query 181 GGTTTTAACAGCTGCAATAATGGTGAAAGAAGCTACAAGCATTCCCGTTTGCAACATTGA 240
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 167 AGTTTTATCCGCTGCAATAATGGTGAAAGAAGCTACAAGCATTCCCGTTTGCAACATCGA 226
Query 241 CACAAACGACTTGGCGAAATGCCGTCCAGCCGTCACTGGAAACAACCCTCCACCA-CCGG 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 227 CACAAACGACTTGGAGAAATGCCGTCCAGCCGTCACTGGAAACAACCCTCCAC-ATCCGG 285
Query 300 GACCGGACTGCTGCGCAGTGGCCAGAGTTGCTAATCTACAATGCCTCTGCCCGTACAAGC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 286 GACCGGACTGCTGCGCAGTGGCCAGAGCTGCTAATCTACAATGCCTCTGCCCGTACAAGC 345
Query 360 CTTATCTCCCCACTGTCGGGATAGACCCATCTAGAGTCAGGCCTCTTCTTGCCAATTGTG 419
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CTTATCTCTCCACTGTTGGGATAGACCCATCTAGAGTCAGGCCTCTTCTTGCCAATTGTG 405
Query 420 GTGTAAACAGTCCTTCCTGTTTCTAAGC-ATGAAGAACTGAGCTGAAGTCAGGCCCAGTC 478
| ||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||
Sbjct 406 GCCTAAACAGTCCTTCCTGTTTCTAAGCTATGAAGAACTGAGCTGAAGACAAGCCG-GTC 464
Query 479 TCCCACAGACTTTGTCTTGCCCTGAAGTCTCTAAGCTATAAATATGTCTTTTGCTGTTCT 538
| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 465 TGCCACAGACTTTGTCTTGCCCTGAAGTCTCTAAGCTATAA-TATGTCTTGTGCTGTTCT 523
Query 539 GATTCGCATAAATATCAACTTTGCAGTGATTTTTCAGTCACCTTATCTATTATATAGATG 598
||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 524 AATTCGAATAAATGTCAACTTTGCAATGCTTTTTCAGTCACCTTATCTATTATATAGATG 583
Query 599 AACCATGTTCTAC 611
|||||||||||||
Sbjct 584 AACCATGTTCTAC 596
> Ahg495625 jgi|Araly1|495625|fgenesh2_kg.8__1441__AT5G55410.1
Length=654
Score = 231 bits (125), Expect = 4e-60
Identities = 287/362 (79%), Gaps = 24/362 (7%)
Strand=Plus/Plus
Query 117 TAGA-AAAAGAGAGAATGGGTAAGGACAACACCAGAATCCTCATGCAATTTTCAGCTCTC 175
|||| ||||||||||||||||||| |||| |||||| |||| ||||||||| |||||||
Sbjct 100 TAGAGAAAAGAGAGAATGGGTAAGAACAATACCAGATTCCTGATGCAATTTGCAGCTCTT 159
Query 176 GCGATGGTTTTAACAGCTGCAATAATGGTGAAAGAAGCTACAAGCAT-TCCCGTTTGCAA 234
|| || |||||||| | |||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 160 GCAATAGTTTTAACCGTTGCAATAATGGTGAAAGAAGCTACAAGCATGTCCA-TTTGTAA 218
Query 235 CATTGACACAAACGACT-TGGC-GAAATGCCGTCCAGCCGTCACTGGAAACAA-CCCTCC 291
||| |||||||| || | || | |||||| ||||||||| ||||||||||||| ||| ||
Sbjct 219 CATGGACACAAATGA-TATG-CAGAAATGTCGTCCAGCCATCACTGGAAACAATCCC-CC 275
Query 292 ACCACCGGG-ACCGGACTGCTGCGCAGTGGC-CAGAGTTGCTAATCTAC-AATGCCTCTG 348
|| || | | || | ||||||| ||||| | ||| |||||||| | ||||| | ||
Sbjct 276 GCCTCCTGTCAACG-AGTGCTGCGTAGTGGTTC-GAGGCGCTAATCT-CGAATGCTTATG 332
Query 349 CCCG-TACAAGCCTTATCTCCCCACTGT-CGGGATAGACCCATCTAGAGTCA-GGCCTCT 405
| | | |||| ||||||||| | | | || || || ||||||| |||| ||| |||
Sbjct 333 CA-GATTCAAGTTTTATCTCCCGATTTTACGA-ATTGATCCATCTAAAGTCGCGGC-TCT 389
Query 406 TCTTGCCAATTGTGGTGT-A-AACAGTCCTTCCTGTTT-CTAAGCATGAAGAACTGAGCT 462
| | || || |||||||| | |||||||| || || || | ||| ||||||| ||||||
Sbjct 390 TGTAGCTAAATGTGGTGTTACAACAGTCCCTCGTGCTTGCCAAGTTTGAAGAAATGAGCT 449
Query 463 GA 464
||
Sbjct 450 GA 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5