BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55460.1

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495629 jgi|Araly1|495629|fgenesh2_kg.8__1445__AT5G55460.1         305    2e-82


> Ahg495629 jgi|Araly1|495629|fgenesh2_kg.8__1445__AT5G55460.1
Length=433

 Score =  305 bits (165),  Expect = 2e-82
 Identities = 274/322 (85%), Gaps = 25/322 (8%)
 Strand=Plus/Plus

Query  148  CCGTAATTGGAGACAACCCGCCATCTCCAATCAAAGAGTGTTGTGAACTCCTCCAAGCCG  207
            |||||| |||||||||||| |||||||||  |||||| ||||||||| ||||||||||||
Sbjct  112  CCGTAACTGGAGACAACCCACCATCTCCACGCAAAGAATGTTGTGAAGTCCTCCAAGCCG  171

Query  208  CTAATCTGAAATGCATCTGCAGATTCAAGTCTGTTCTCCCCGTTTTAGCGGTTTACCCAT  267
            |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct  172  CTAATCTGGAATGCATCTGTAGATTCAAGTCTTTTCTCCCCGTTTTAGCGGTTTACCCAT  231

Query  268  CTAAAGTCCAGGCTCTTCTGAGCAAATGTGGCCTGACAACAATCCCTCCTGCTTGCCAAG  327
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  232  CTAAAGTCCAGGCTCTTCTGAGCAAATGTGGCGTTACAACAATCCCTCCTGCTTGCCAAG  291

Query  328  -------C----T----T---T--GAGGAACTGAGATGGAGACAGACCGTTCTA--GCAG  365
                   |    |    |   |  || |||| |||  |||||||||||| ||||  ||||
Sbjct  292  GTAAAATCAAAATACCATAACTTTGAAGAACCGAGGGGGAGACAGACCGCTCTACAGCAG  351

Query  366  ACTTCACTCGAACTTGTCCTGCAACTGATCTGAAGTCTTACAATATGTCTTA---TGTTC  422
            ||||| ||||| ||||||||| || ||||||||||||||||||||| |||||   |||||
Sbjct  352  ACTTCGCTCGATCTTGTCCTGAAAGTGATCTGAAGTCTTACAATATATCTTAAAGTGTTC  411

Query  423  CGATCCAAATAAATTACAAACT  444
             ||||||||||||| |||||||
Sbjct  412  TGATCCAAATAAATCACAAACT  433


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 104/111 (94%), Gaps = 3/111 (3%)
 Strand=Plus/Plus

Query  1    GTCAAGAGAGAATGGATACGAACAATACCAGAAC---TGTGAAATTTGCAGCTCTTGCAA  57
            ||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||
Sbjct  1    GTCAAGAGAGAATGGATACGAACAATACCAGAACCCATGTGAAATTTGCAGCTCTTGTAA  60

Query  58   TAGTTTTAGCCGCCTTGGTGTTGATGGAAGAACCTACGAGCATTACCGCAT  108
             ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  61   CAGTTTTAGCCGCCCTGGTGTTGATGGAAGAACCTACGAGCATTCCCGCAT  111



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18619927432


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5