BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55470.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495630 jgi|Araly1|495630|fgenesh2_kg.8__1446__AT5G55470.1 2516 0.0
> Ahg495630 jgi|Araly1|495630|fgenesh2_kg.8__1446__AT5G55470.1
Length=1720
Score = 2516 bits (1362), Expect = 0.0
Identities = 1606/1721 (93%), Gaps = 27/1721 (2%)
Strand=Plus/Plus
Query 87 AAATCGACGAAATCGAAAACATTATC--GA----GTGA-AAAATGAGTATCGGATTAACA 139
||||||||||||||||||||||| || || |||| |||||| |||| |||||||||
Sbjct 1 AAATCGACGAAATCGAAAACATTCTCGAGATTCTGTGAGAAAATGGGTATTGGATTAACA 60
Query 140 GAGTTTGTGACGAATAAACTAGCAGCTGAGCATCCTCAGGTGATACCAATCTCAGTGTTC 199
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAGTTTTTGACGAATAAGCTAGCAGCTGAGCATCCTCAGGTGATCCCAATCTCAGTGTTC 120
Query 200 ATCGCCATTCTCTGTCTATGTTTAGTTATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 259
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATTGCCATTCTCTGTCTCTGTTTAGTCATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 180
Query 260 AATGAATCTATTACCGCCATTTTAGTAGGAGCAGCATCAGGAACAGTGATCTTACTTATT 319
|||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 181 AATGAATCCATTACCGCCATTTTAGTCGGAGCAGTATCAGGAACAGTGATCTTGCTTATT 240
Query 320 AGTAAAGGAAAAAGTTCACATATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 379
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTAAAGGAAAAAGTTCACACATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 300
Query 380 CTTCCTCCAATAATCTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTTTTTCACAAC 439
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTTCCTCCGATAATTTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTCTTTCACAAC 360
Query 440 TTTTTAACCATCATGTCCTTTGGTGTGATTGGAGTTTTCATCTCCACTGTCATTATCTCG 499
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 361 TTTTTAACCATCATGTCCTTTGGGGTGATTGGAGTTTTTATCTCCACTGTCATTATTTCG 420
Query 500 TTTGGGACTTGGTGGCTGTTTCCCAAGTTGGGATTTAAGGGGTTGAGTGCTAGAGACTAT 559
||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 421 TTTGGGACTTGGTTTCTGTTTCCCAAGTTGGGATTTAAGGGATTGAGTGCTCGAGACTAT 480
Query 560 CTTGCCATAGGAACGATTTTCTCATCAACTGATACTGTTTGCACTCTACAGATTCTCCAT 619
|||||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 481 CTTGCCATCGGGACGATATTCTCGTCAACTGATACAGTCTGCACTCTACAGATTCTCCAT 540
Query 620 CAAGATGAAACACCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTGGTGAATGATGCA 679
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CAAGATGAAACTCCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTAGTGAATGATGCA 600
Query 680 ACCTCAGTTGTACTGTTCAACGCCGTGCAAAAGATTCAATTTGAAAGCCTAACCGGTTGG 739
||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 601 ACCTCGGTTGTACTGTTCAACGCCGTGCAAAAGATTCATTTTGAAAGCCTAAACGGTTGG 660
Query 740 ACGGCGCTGCAAGTATTTGGGAACTTTTTGTACCTCTTCTCAACAAGCACACTTCTCGGA 799
||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 ACGGCTCTGCGAGTGTTTGGGAACTTTTTGTACCTCTTCTCGACAAGCACACTTCTCGGA 720
Query 800 ATTGGTGTGGGGCTAATAACATCTTTTGTTCTTAAAACCTTGTATTTTGGAAGACATTCT 859
|||| |||||||||| |||| |||||||| || ||||| ||||||||||||||||||||
Sbjct 721 ATTGCTGTGGGGCTAGTAACGTCTTTTGTCCTGAAAACTTTGTATTTTGGAAGACATTCA 780
Query 860 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 840
Query 920 CTCTTCTCATTAAGTGGAATTCTTACTGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 979
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 841 CTCTTCTCATTAAGTGGGATTCTCACAGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 900
Query 980 GCATCATATAACGTGACAGAGAGCTCAAGAATCACTTCCAGGCAT-GTAT-------TTG 1031
||||||||||| ||||||||||| || |||||||||||||||||| || | |||
Sbjct 901 GCATCATATAATGTGACAGAGAGTTCGAGAATCACTTCCAGGCATTGTTTCAGACAATTG 960
Query 1032 CA-AT----G---T--TGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1081
|| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CATATATTTGCGATGATGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1020
Query 1082 GATGCTCTTGATTTTACAAAGTGGAAGACAAGCAGCTTAAGCTTTGGGGGTACTCTGGGT 1141
|||||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1021 GATGCTCTTGATGTTACCAAGTGGAATACAAGCAGCTTAAGCGTTGGGGGTACTCTGGGT 1080
Query 1142 GTCTCCGGTGTCATAACCGCATTAGTATTGCTTGGACGAGCAGCATTTGTCTTTCCACTC 1201
|||||| ||||||||||||||||||| |||||||||||||| || ||||| ||||| |||
Sbjct 1081 GTCTCCAGTGTCATAACCGCATTAGTGTTGCTTGGACGAGCGGCGTTTGTATTTCCGCTC 1140
Query 1202 TCGGTCTTAACAAATTTCATGAACAGGCACACTGAAAGAAACGAGTCTATCACATTTAAG 1261
||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1141 TCGATCTTAACAAATTTCATGAATAGACACACAGAAAGAAACGAGTCTATCACATTTAAG 1200
Query 1262 CATCAGGTGATCATTTGGTGGGCAGGTCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1321
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 CATCAGGTGATCATTTGGTGGGCAGGGCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1260
Query 1322 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1320
Query 1382 AACACCACTATCGTTGTTCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAACCACTT 1441
| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 ACCACCACTATTGTTGTCCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAGCCACTT 1380
Query 1442 GTGAATTATCTCCTTCCTCAAGATGCAAGTCACAACACCGGAAATAGAGGTAAACGCACT 1501
||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1381 GTGAACTATCTGCTTCCTCATGATGCAAGTCACAACACCAGAAATAGAGGTAAACGTACT 1440
Query 1502 GAGCCAGGTTCTCCGAAAG-AAGATGCGACACTTCCTCTTCTTTCCTTTGACGAGTCTGC 1560
||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1441 GAGCCAGGTTCCCC-AAAGGAAGATGCGACGCTTCCTCTTCTTTCCTTTGACGAGTCTGC 1499
Query 1561 TTCCACCAACTTCAATAGAGCTAAAGATAGTATTTCCCTTCTGATGGAACAACCTGTGTA 1620
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 TTCCACCAACTTCAATAGAGCAAAAGATAGTATCTCCCTTCTGATGGAACAACCTGTGTA 1559
Query 1621 CACCATCCACCGCTACTGGAGAAAGTTTGACGACACATACATGAGGCCTATCTTCGGTGG 1680
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 CACCATCCACCGCTACTGGAGAAAGTTCGACGACACATACATGAGGCCTATCTTCGGTGG 1619
Query 1681 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATCCGGGTTCTCCGCGGGGAAATC 1740
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1620 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATTTGGGTTCTCCGCGGGGAAGGC 1679
Query 1741 ATGATGAGTTAGttttttttATAGTCAAGAAAGTAGGATAG 1781
|||||||||||||||||||||||||| | ||||||||||||
Sbjct 1680 ATGATGAGTTAGTTTTTTTTATAGTCCACAAAGTAGGATAG 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5