BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55470.1 Length=1861 Score E Sequences producing significant alignments: (Bits) Value Ahg495630 jgi|Araly1|495630|fgenesh2_kg.8__1446__AT5G55470.1 2516 0.0 > Ahg495630 jgi|Araly1|495630|fgenesh2_kg.8__1446__AT5G55470.1 Length=1720 Score = 2516 bits (1362), Expect = 0.0 Identities = 1606/1721 (93%), Gaps = 27/1721 (2%) Strand=Plus/Plus Query 87 AAATCGACGAAATCGAAAACATTATC--GA----GTGA-AAAATGAGTATCGGATTAACA 139 ||||||||||||||||||||||| || || |||| |||||| |||| ||||||||| Sbjct 1 AAATCGACGAAATCGAAAACATTCTCGAGATTCTGTGAGAAAATGGGTATTGGATTAACA 60 Query 140 GAGTTTGTGACGAATAAACTAGCAGCTGAGCATCCTCAGGTGATACCAATCTCAGTGTTC 199 |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GAGTTTTTGACGAATAAGCTAGCAGCTGAGCATCCTCAGGTGATCCCAATCTCAGTGTTC 120 Query 200 ATCGCCATTCTCTGTCTATGTTTAGTTATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 259 || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 ATTGCCATTCTCTGTCTCTGTTTAGTCATCGGCCACTTGCTTGAAGAGAATCGATGGGTT 180 Query 260 AATGAATCTATTACCGCCATTTTAGTAGGAGCAGCATCAGGAACAGTGATCTTACTTATT 319 |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||| Sbjct 181 AATGAATCCATTACCGCCATTTTAGTCGGAGCAGTATCAGGAACAGTGATCTTGCTTATT 240 Query 320 AGTAAAGGAAAAAGTTCACATATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 379 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTAAAGGAAAAAGTTCACACATTTTGGTGTTTGATGAAGAACTCTTCTTCATTTACCTT 300 Query 380 CTTCCTCCAATAATCTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTTTTTCACAAC 439 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 CTTCCTCCGATAATTTTCAATGCTGGGTTCCAAGTTAAGAAAAAGAAGTTCTTTCACAAC 360 Query 440 TTTTTAACCATCATGTCCTTTGGTGTGATTGGAGTTTTCATCTCCACTGTCATTATCTCG 499 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 361 TTTTTAACCATCATGTCCTTTGGGGTGATTGGAGTTTTTATCTCCACTGTCATTATTTCG 420 Query 500 TTTGGGACTTGGTGGCTGTTTCCCAAGTTGGGATTTAAGGGGTTGAGTGCTAGAGACTAT 559 ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 421 TTTGGGACTTGGTTTCTGTTTCCCAAGTTGGGATTTAAGGGATTGAGTGCTCGAGACTAT 480 Query 560 CTTGCCATAGGAACGATTTTCTCATCAACTGATACTGTTTGCACTCTACAGATTCTCCAT 619 |||||||| || ||||| ||||| ||||||||||| || ||||||||||||||||||||| Sbjct 481 CTTGCCATCGGGACGATATTCTCGTCAACTGATACAGTCTGCACTCTACAGATTCTCCAT 540 Query 620 CAAGATGAAACACCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTGGTGAATGATGCA 679 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 541 CAAGATGAAACTCCATTGCTATACAGCTTAGTCTTTGGAGAAGGAGTAGTGAATGATGCA 600 Query 680 ACCTCAGTTGTACTGTTCAACGCCGTGCAAAAGATTCAATTTGAAAGCCTAACCGGTTGG 739 ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 601 ACCTCGGTTGTACTGTTCAACGCCGTGCAAAAGATTCATTTTGAAAGCCTAAACGGTTGG 660 Query 740 ACGGCGCTGCAAGTATTTGGGAACTTTTTGTACCTCTTCTCAACAAGCACACTTCTCGGA 799 ||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 ACGGCTCTGCGAGTGTTTGGGAACTTTTTGTACCTCTTCTCGACAAGCACACTTCTCGGA 720 Query 800 ATTGGTGTGGGGCTAATAACATCTTTTGTTCTTAAAACCTTGTATTTTGGAAGACATTCT 859 |||| |||||||||| |||| |||||||| || ||||| |||||||||||||||||||| Sbjct 721 ATTGCTGTGGGGCTAGTAACGTCTTTTGTCCTGAAAACTTTGTATTTTGGAAGACATTCA 780 Query 860 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ACTACACGCGAACTCGCCATCATGGTTCTAATGGCTTACCTTTCATATATGTTGGCTGAG 840 Query 920 CTCTTCTCATTAAGTGGAATTCTTACTGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 979 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 841 CTCTTCTCATTAAGTGGGATTCTCACAGTTTTCTTCTGTGGTGTTTTAATGTCGCATTAT 900 Query 980 GCATCATATAACGTGACAGAGAGCTCAAGAATCACTTCCAGGCAT-GTAT-------TTG 1031 ||||||||||| ||||||||||| || |||||||||||||||||| || | ||| Sbjct 901 GCATCATATAATGTGACAGAGAGTTCGAGAATCACTTCCAGGCATTGTTTCAGACAATTG 960 Query 1032 CA-AT----G---T--TGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1081 || || | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CATATATTTGCGATGATGTCCTTTATTGCGGAGACATTCATATTTCTGTATGTTGGAACA 1020 Query 1082 GATGCTCTTGATTTTACAAAGTGGAAGACAAGCAGCTTAAGCTTTGGGGGTACTCTGGGT 1141 |||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1021 GATGCTCTTGATGTTACCAAGTGGAATACAAGCAGCTTAAGCGTTGGGGGTACTCTGGGT 1080 Query 1142 GTCTCCGGTGTCATAACCGCATTAGTATTGCTTGGACGAGCAGCATTTGTCTTTCCACTC 1201 |||||| ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||| Sbjct 1081 GTCTCCAGTGTCATAACCGCATTAGTGTTGCTTGGACGAGCGGCGTTTGTATTTCCGCTC 1140 Query 1202 TCGGTCTTAACAAATTTCATGAACAGGCACACTGAAAGAAACGAGTCTATCACATTTAAG 1261 ||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1141 TCGATCTTAACAAATTTCATGAATAGACACACAGAAAGAAACGAGTCTATCACATTTAAG 1200 Query 1262 CATCAGGTGATCATTTGGTGGGCAGGTCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1321 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1201 CATCAGGTGATCATTTGGTGGGCAGGGCTAATGCGAGGTGCTGTCTCAATTGCTCTGGCT 1260 Query 1322 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TTCAAGCAGTTCACATACTCCGGTGTTACATTGGATCCTGTGAATGCTGCCATGGTCACC 1320 Query 1382 AACACCACTATCGTTGTTCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAACCACTT 1441 | ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1321 ACCACCACTATTGTTGTCCTCTTTACTACACTGGTCTTTGGTTTCCTCACAAAGCCACTT 1380 Query 1442 GTGAATTATCTCCTTCCTCAAGATGCAAGTCACAACACCGGAAATAGAGGTAAACGCACT 1501 ||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||| Sbjct 1381 GTGAACTATCTGCTTCCTCATGATGCAAGTCACAACACCAGAAATAGAGGTAAACGTACT 1440 Query 1502 GAGCCAGGTTCTCCGAAAG-AAGATGCGACACTTCCTCTTCTTTCCTTTGACGAGTCTGC 1560 ||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1441 GAGCCAGGTTCCCC-AAAGGAAGATGCGACGCTTCCTCTTCTTTCCTTTGACGAGTCTGC 1499 Query 1561 TTCCACCAACTTCAATAGAGCTAAAGATAGTATTTCCCTTCTGATGGAACAACCTGTGTA 1620 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1500 TTCCACCAACTTCAATAGAGCAAAAGATAGTATCTCCCTTCTGATGGAACAACCTGTGTA 1559 Query 1621 CACCATCCACCGCTACTGGAGAAAGTTTGACGACACATACATGAGGCCTATCTTCGGTGG 1680 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1560 CACCATCCACCGCTACTGGAGAAAGTTCGACGACACATACATGAGGCCTATCTTCGGTGG 1619 Query 1681 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATCCGGGTTCTCCGCGGGGAAATC 1740 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1620 ACCTCGTCGAGAAAACCAACCAGAATGCTAGAATTGATTTGGGTTCTCCGCGGGGAAGGC 1679 Query 1741 ATGATGAGTTAGttttttttATAGTCAAGAAAGTAGGATAG 1781 |||||||||||||||||||||||||| | |||||||||||| Sbjct 1680 ATGATGAGTTAGTTTTTTTTATAGTCCACAAAGTAGGATAG 1720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69895599575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5