BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55480.1
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495631 jgi|Araly1|495631|fgenesh2_kg.8__1447__AT5G55480.1 3973 0.0
Ahg492137 jgi|Araly1|492137|fgenesh2_kg.7__1570__AT4G26690.1 1472 0.0
> Ahg495631 jgi|Araly1|495631|fgenesh2_kg.8__1447__AT5G55480.1
Length=2559
Score = 3973 bits (2151), Expect = 0.0
Identities = 2441/2579 (95%), Gaps = 28/2579 (1%)
Strand=Plus/Plus
Query 1 GGTCGAAGTTGGTGAAGTCGCCGCCGGGACAACTCAGGTTGT-TACAGATGATAAACATG 59
||||||||||||||||||||||||||||| |||||||||| | | || || |||
Sbjct 1 GGTCGAAGTTGGTGAAGTCGCCGCCGGGATAACTCAGGTT-TCT-CA-CTG------ATG 51
Query 60 CGAGATAATCCAACAATGCATGTCTTACAAGCTTCAAAGTTTCTAT-TTTTAGCTCTTAT 118
|||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||
Sbjct 52 CGAGATAATCCAACAATGCATGGCTTACAAGCTTCAAAGTTTCT-TCTTTTAGCTCTCAT 110
Query 119 TTTGATCCAGTTGCTGTCTACTCAACTCTTTGCTCAAAGATCTAAAAGTCCATGGCAAAC 178
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 111 TTTGATCCACTTGCTATCTACTCAACTCTTTGCTCAAAGATCTAAAAGCCCATGGCAGAC 170
Query 179 ACTCACTGGAGATGCTCCCCTTGTCATTGCTCGTGGTGGGTTTTCTGGGTTGTTGCCAGA 238
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 171 ACTCACTGGAGATGCTCCTCGTATCATTGCTCGTGGTGGGTTTTCTGGGTTGTTGCCAGA 230
Query 239 TTCAAGTCTCGATGCTTACAGTTTTGTATCGCAGACTAGTGTTCCTGGTGCTGTTCTTTG 298
||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 231 TTCAAGTGTCGATGCTTATAGTTTTGTATCGCAGACTAGTGTTCCTGGTACTCTTCTTTG 290
Query 299 GTGTGATGTGCAACTAACGAAAGATGCAATT-GGACTTTGCTTCCCTGATGTGAAGATGA 357
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 291 GTGTGATGTGCAACTAACGAAAGATGCAATTGGGA-TTTGCTTCCCTGATGTGAAAATGA 349
Query 358 TGAATGCTTC-CAATATTCAAGATGTTTACCCTAAACGGAA-AACTTCTTACTTGCTTAA 415
|||||||||| | |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 350 TGAATGCTTCTC-ATATTCAAGATGTTTACCCTAAACGGAAGAA-TTCTTACTTGCTTAA 407
Query 416 TGGAGTCCCTACTCAGGATTGGTTCACCATTGATTTCAACTTCAAGGATCTGACA-AAAG 474
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 408 TGGAGTCCTTACTCAGGATTGGTTCACCATTGATTTCAACTTCAAGGATTTGA-ATACCG 466
Query 475 TTATCTTGAAACAAGGAATATTATCACGGTCAGCGGCATTCGATGGAAACAGTTACGGGA 534
|| |||||||||||||||||||||| ||||||| |||||||| ||||||| ||||| ||
Sbjct 467 TTTTCTTGAAACAAGGAATATTATCGCGGTCAGATGCATTCGAAGGAAACAATTACGCGA 526
Query 535 TATCGACAGTTAAAGATATATCTACGCAGTTAAAACCTGAGGGTTTTTGGTTAAATGTTC 594
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TATCAACAGTTAAAGATATATCTACGCAGTTAAAACCTGAGGGTTTTTGGTTAAATGTTC 586
Query 595 AGCACGACGCATTCTATGCTCAACATAATCTGAGCATGAGCAGCTTTCTGCTATCAATTT 654
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 587 AGCACGACGCATTCTATGCTCAACACAATCTGAGCATGAGCAGCTTTCTGCTATCAATTT 646
Query 655 CCAAGACTGTGATTATTGACTATCTCTCTTCCCCTGAGGTGAATTTCTTTCGGAACATTG 714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CCAAAACTGTGATTATTGACTATCTCTCTTCCCCTGAGGTGAATTTCTTTCGGAACATTG 706
Query 715 GTAGGCGTTTTGGACGCAATGGGCCAAAGTTTGTGTTCCGGTTTCTTGAAAAAGATGATG 774
|||| |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||
Sbjct 707 GTAGCCGTTTTGGACGCAAGGGGCCAAAGTTTGTGTTCAGGTTTCTCGAGAAAGATGATG 766
Query 775 TTGAGGTGTCAACCAACCAAACCTATGGATCTCTTGCGGGAAACCTAACATTCCTCAAGA 834
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 767 TTGAGGTGTCAACCAACCAAACCTATGGATCTCTTGCGGGAAACCTAACTTTTGTCAAGA 826
Query 835 CTTTTGCTTCAGGAGTTCTTGTTCCCAAGTCTTACATATGGCCAATCGAAAGCCAATACT 894
| || ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 827 CGTTCGCTTCAGGAATTCTTGTTCCCAAATCTTACATATGGCCGGTCGAAAGCCAATACT 886
Query 895 TGCTTCCCCGTACATCTTTTGTTCAAGATGCTCACAAAGCAGGATTAGAAGTATATGCAT 954
||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 887 TGCTTCCCCATACATCCTTTGTTCAAGATGCTCATAAAGCAGGATTAGAAGTATATGCAT 946
Query 955 CAGGTTTTGGAAACGATTTTGATCTTGCATACAACTACAGTTTTGATCCATTGGCCGAGT 1014
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CAGGTTTTGCAAACGACTTTGATCTTGCATACAACTACAGTTTTGATCCATTGGCCGAGT 1006
Query 1015 ACTTATCTTTCATGGACAATGGAGATTTCTCCGTGGATGGCTTGCTTTCTGATTTCCCAC 1074
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1007 ACTTATCTTTCGTGGACAATGGAGATTTCTCCGTGGATGGCGTGCTTTCTGATTTTCCAC 1066
Query 1075 TAACAGCATCTTCAGCTGTTGACTGCTTCTCCCATCTTGGAAGTAATGCTTCATCACAAG 1134
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TTACAGCATCTTCAGCTGTTGACTGCTTCTCCCATCTTGGAAGTAATGCTTCATCACAAG 1126
Query 1135 TGGATTTTCTTGTTATATCCAAAAATGGAGCAAGTGGAGACTACCCTGGCTGTACTGACT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TGGATTTTCTTGTTATATCCAAAAATGGAGCAAGTGGAGACTACCCTGGCTGTACTGACT 1186
Query 1195 TGGCCTATACAAAGGCTATCAAAGATGGTGCTGATGTTATCGATTGTTCTCTTCAAATGT 1254
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1187 TGGCCTATACAAAGGCTATCGAAGATGGTGCTGATGTTATTGATTGTTCTCTTCAAATGT 1246
Query 1255 CATCAGACGGGATTCCGTTTTGCTTAAGTTCAATAAATCTTGGGGAGAGCACGAACGTTG 1314
|||||||||| ||||||||||||| ||||||||| ||||||||||| ||||| |||||||
Sbjct 1247 CATCAGACGGTATTCCGTTTTGCTCAAGTTCAATTAATCTTGGGGATAGCACAAACGTTG 1306
Query 1315 TCCAAAGTCCTTTCAGAAACCGTTCTACAACTGTTCCTGAGATCGGCTCACTTCCTGGAA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TCCAAAGTCCTTTCAGAAACCGTTCTACAACTGTTCCTGAGATCGGCTCACTTCCTGGAA 1366
Query 1375 TATACAGCTTTAGTCTGGCATGGTCTGAGATTCAGACCTTGAGACCTGCTATTGAAAACC 1434
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1367 TATACAGCTTTAGTCTGGCATGGTCTGAGATTCAGACATTGAGACCTGCTATTGAAAACC 1426
Query 1435 CCTACAGCAGGGAATTCACTATGTTTAGGAATCCAAGGGAGAGAAGTTCCGGGAAGTTTG 1494
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1427 CCTACAGCAGGGAATTCACTTTGTTTAGGAATCCAAGGGAGAAAAGTTCCGGGAAGTTTG 1486
Query 1495 TTTCACTTTCTGATTTCTTGAACTTGGCAAAAAACTCCAGCTCTCTCACCGGTGTTTTGA 1554
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1487 TTACGCTTTCTGATTTCTTGAACTTGGCAAAAAACTCCAGCTCTCTCGCCGGTGTTTTGA 1546
Query 1555 TCAGCGTGGAGAATGCAACATATCTGAGAGAGAAGCAAGGGCTCGATGCTGTTAAGGCAG 1614
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1547 TCAGCGTGGAGAATGCAACATACCTGAGAGAGAAGCAAGGGCTCGACGCTGTTAAGGCAG 1606
Query 1615 TTCTCGATACACTCACAGAAGCTGGTTACAGCAACAAGACAACAACCACAAGGGTTATGA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TTCTCGATACACTCACAGAAGCTGGTTACAGCAACAAGACAACAACCACAAGGGTTATGA 1666
Query 1675 TTCAGTCAACTAACAGCTCAGTCTTAATTGACTTCAAGAAACAGAGCCGGTATGAGACAG 1734
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1667 TTCAGTCAACTAACAGCTCAGTCTTAGTTGAATTCAAGAAACAGAGCCGGTACGAGACAG 1726
Query 1735 TGTACAAAGTCGAAGAAACCATCCGCGACATTCTCGACACTGCAATCGAAGACATTAAGA 1794
||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1727 TGTACAAAGTCGAAGAAGTCATCCGCGACATCCTCGACTCTGCAATCGAAGACATTAAGA 1786
Query 1795 AATTTGCGGATGCTGTTGTCATTAGTAAAAA-ATCAGTCTTCCCCACCAGCGAAAGTTTC 1853
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1787 AATTTGCGGATGCTGTTGTCATTAG-AAAAACATCAGTCTTCCCCACCAGCGAAAGTTTC 1845
Query 1854 ACCACTGGACAAACTAAACTAGTGGAGAGGCTGCAGAAGTTTCAGCTCCCCGTTTACGTT 1913
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1846 ACCACTGGACAAACTAAACTAGTGGAGAGGCTGCAGAAGTTTCAGCTTCCCGTTTACGTT 1905
Query 1914 GAAGTGTTCCGAAATGAGTTTGTTTCTCAACCATGGGATTTCTTCGCTGATGCAACTGTC 1973
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1906 GAAGTGTTCCGGAACGAGTTTGTTTCTCAACCATGGGATTTCTTCGCCGATGCAACTGTC 1965
Query 1974 GAGATAAACTCGCATGTTACTGGAGCTGGTATCAATGGAACCATCACTGAGTTCCCTCTC 2033
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1966 GAGATAAACTCGCATGTTACTGGAGCTGGTATCAATGGAACAATCACTGACTTCCCTCTC 2025
Query 2034 ACAGCCGCGAGATACAAAAGGAACTCGTGCTTGACCCGCAAAGACGTGCCTCCTTACATG 2093
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2026 ACAGCCGCGAGATACAAAAGGAACTCGTGCTTGACCCGCAAAGACCCGCCTCCTTACATG 2085
Query 2094 ATCCCAGTTCAGCCCGCTGGCCTCTTAACCATCGTGAGTCCTGCTTCGTTACCTCCAGCC 2153
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2086 ATCCCAGTTCAGCCTGCTGGCCTCTTAACCATCGTGAGTCCTGCTTCTTTACCTCCAGCC 2145
Query 2154 GAAGCACCAAGCCCAGTTTTCACAGATGCTGATGTCACTGAACCACCATTACCTCCAGTC 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 GAAGCACCAAGCCCAGTTTTCACAGATGCTGATGTCACTGAACCACCATTACCTCCAGTC 2205
Query 2214 TCAGCCAGAGCCCCAACCACCACCCCTGGACCTCAATCAACAGGTGAAAAGTCTCCCAAC 2273
||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 2206 ACAGCCAGAGCCCCAACCACCACCCCTGGACCACAGTCAACAGGTGAAAAGACTCCCAAC 2265
Query 2274 GGACAAACCCGAGTCGCTCTATCTCTTCTTCTCTCTGCATTCGCTACGGTTTTCGCCTCT 2333
||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||
Sbjct 2266 GGACACACCCGAGTCGCTCAATCTCTTCTTCTTTCTGCATTTGCTACGGTTTTTGCCTCT 2325
Query 2334 CTTCTACTTCTGTGATCACATTGATCC-GATCACCCGCGCCTGTAGGATTTCATTGTGAG 2392
||||||||| ||||||| ||||||||| | ||||||||||| |||| ||||| |||||||
Sbjct 2326 CTTCTACTTGTGTGATCGCATTGATCCTG-TCACCCGCGCCAGTAGAATTTCTTTGTGAG 2384
Query 2393 ATTGATCGAGTCCTCAGGGAAttttttttCCTTCTAACAGTTCTTGGGATTCTTTGCAGT 2452
|||||| ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 2385 ATTGATTGAGTCCTCAGGAAATTTTTTT-CCTCCTAACAGTTCTTGAGATTCTTTGCAGT 2443
Query 2453 GATGAGTTTCTTGTCTGTTCATATTATTCGTTGTCTTTTGTAGAATTTCTGGCCAAAGAG 2512
||||||||||||||||||||||||| |||||| ||||| || |||||| |||||||||
Sbjct 2444 GATGAGTTTCTTGTCTGTTCATATTCTTCGTTATCTTT-GTT-AATTTCCGGCCAAAGAA 2501
Query 2513 GTAAAATTCTTGGACGTAAATTTGTATCATTGTTGTAACATTATTCACTGTAATGTTCT 2571
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2502 GTAAA-TTCTTGGACGTAAATTTGTATCATTGTTGTAACATTAATCACTGTAATCTTCT 2559
> Ahg492137 jgi|Araly1|492137|fgenesh2_kg.7__1570__AT4G26690.1
Length=2672
Score = 1472 bits (797), Expect = 0.0
Identities = 1853/2350 (79%), Gaps = 123/2350 (5%)
Strand=Plus/Plus
Query 62 AGATAATCCAACAATGC-ATGTCTTACAAGCTTCAAAGTTTCTA-TTTTTAGCTCTTATT 119
||||||||| ||||||| | | |||| ||||||| | ||||| ||| | | | || ||
Sbjct 79 AGATAATCCGACAATGCGA-GGATTACGAGCTTCATCGCTTCTACTTTGT-GGTGTTGTT 136
Query 120 TTGATCCAGTTGCTGT-CTACTCAACTCTTTGCTCAAAGATCTAAAAGTCCATGGCAAAC 178
|||| ||| || | | || ||||| || ||| |||| | ||||||||||||||| |||
Sbjct 137 CTGATTCAGCTG-TTTGCTGCTCAAATCGATGCCCAAAAACCTAAAAGTCCATGGCCAAC 195
Query 179 ACTCACTGGAGATGCTCCCCTTGTCATTGCTCGTGGTGGGTTTTCTGGGTTGTTGCCAGA 238
|||||||| ||| ||||| |||| || ||||| |||||||||||||| ||||| |||||
Sbjct 196 GCTCACTGGTGATCCTCCCTTTGTGATAGCTCGGGGTGGGTTTTCTGGATTGTTTCCAGA 255
Query 239 TTCAAGTCT-CGATGCTTACAGTTTTG-TATCGCAGACTAGTGT-TCCTGGTGCTGTTCT 295
||| ||| | ||||||||||| ||| | || | ||| ||||| | | | || ||||||
Sbjct 256 TTCGAGT-TACGATGCTTACAATTTCGCAAT-GTTGACAAGTGTAT-CAGATGTTGTTCT 312
Query 296 TTGGTGTGATGTGCAACTAACGAAAGATGCAATTGG-ACTTTGCTTCCCTGATGTGAA-G 353
||||||||||| || ||||| |||||||| |||| | |||||||||||||| | ||
Sbjct 313 ATGGTGTGATGTTCAGCTAACCAAAGATGCTCTTGGTA-TTTGCTTCCCTGAT-TTAACT 370
Query 354 ATGATG-AATGCTTCCA-ATATTCAAGATGTTTACCCTAAACGGA-AAACTTCTTACTTG 410
|||| | ||||||| || |||| ||| ||||||||||| | || ||| |||||| |
Sbjct 371 ATGA-GCAATGCTT-CATCTATTGAAGTTGTTTACCCTACTC-GACAAAAATCTTACCCG 427
Query 411 CTTAATGGAGTCCCTAC-TCAGGATTGGTTCACCATTGATTTCAACTTCAAGGATCTGAC 469
|||| ||||| ||||| || || ||||||||||||||||||| ||| || ||||| |
Sbjct 428 GTTAACGGAGTTCCTACTTCCGG-TTGGTTCACCATTGATTTCTCCTTGAAAGATCT--C 484
Query 470 AAA--AGTTATCTTGAAACAAGGAATATTATCACGGTCAGCGGCATTCGATGGAAACAGT 527
||| |||| | ||| || ||| |||||||| ||||| | ||||||||| || |
Sbjct 485 AAAGCTGTTAACCTGATACGAGGTATATTATCTCGGTCTGAAAAATTCGATGGTAATTCT 544
Query 528 TACGGGA-TATCGACAGTT-AAAGATATATCTACGCAGTTAAAACCTGAGGGTT-TT-TG 583
|| || ||| ||| ||| |||| || | |||||| | ||||| | || || ||
Sbjct 545 AACCCGATTAT-GACGGTTCAAAG-CGTAGCCACGCAGATGAAACC--ATCATTCTTCTG 600
Query 584 GTTAAATGTTCAGCACGACGCATTCTATGCTCAACATAATCTGAGCATGAGCAGCTTTCT 643
||| |||||||||||||| || || || || ||||| ||| ||||||| ||||| |||||
Sbjct 601 GTTGAATGTTCAGCACGATGCGTTTTACGCGCAACAGAATTTGAGCATTAGCAGTTTTCT 660
Query 644 GCTAT-CAATTTCCAAGACTGTGATTATTGACTATC-TCTCTTCCCCTGAGGTGAATTTC 701
| | | | ||| || ||||| ||||||| || |||||||||||||||||||||||
Sbjct 661 GGT-TGCCGCTTCAAAAACTGTTCCCATTGACT-TCATCTCTTCCCCTGAGGTGAATTTC 718
Query 702 TTTCGGAACATTGGTAGG-CGTTTTGGACGCAATGGGCCAAAGT-TTGTGTTCCGGTTTC 759
||| |||| ||| | || ||||| || || ||||| || ||| |||||||||||||||
Sbjct 719 TTTAGGAAAATTTCT-GGTCGTTTCGGGCGTAATGGACC-TAGTCTTGTGTTCCGGTTTC 776
Query 760 TTGAAAAAGATGATGTT-GAGGTGTCAACCAACCA-AACCTATGGATC--TCTTGCGGGA 815
| | |||| || ||| ||| ||| ||| || |||||| || || |||| | |
Sbjct 777 TCGGTCAAGAAGA-GTTCGAGCCAACAA-CAAACAGAACCTACGGCTCTATCTT--GAGT 832
Query 816 AACCTAACATTCCTCAAGACTTTTGCTTCA-GGAGTTCTTGTTCCCAAGTCTTACATATG 874
||||| || || ||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 833 AACCTGACTTTTGTCAAGACTTTTGCTTCAGGGA-TCCTTGTTCCCAAGTCTTACATATT 891
Query 875 GCCAATCGAAAG-CCA--A-TACTTGCTTCC-CCGTACATCTTTTGTTCAAGATGCTCAC 929
|||| ||| | | ||| | ||||||||||| || |||||| || |||||||||||||||
Sbjct 892 GCCACTCG-ATGACCAGCAGTACTTGCTTCCTCC-TACATCCTTAGTTCAAGATGCTCAC 949
Query 930 AAAGCAGGATTAGAAGTATATGCATCAGGTTTTGGAAACGATTTTGATCTTGCATACAAC 989
||||||||||||||||| | || |||||||||| ||| ||| ||||| ||||| | ||
Sbjct 950 AAAGCAGGATTAGAAGTTTTTGTGTCAGGTTTTGCAAATGATATTGATATTGCACATGAC 1009
Query 990 TACAGTTTTGATCCATTGGCCGAGTACT-TATCTTTCATGGACAATGG-AGATTTCTCCG 1047
|||||||| |||||| | | ||||| | ||||||| |||||||||| | ||||||| |
Sbjct 1010 TACAGTTTCGATCCAGTCTCTGAGTA-TCTATCTTTTGTGGACAATGGCA-ATTTCTCTG 1067
Query 1048 TGGATGGCT-TGCTTTCTGA-TTTCCCACTAACAGCATCTTCAGCTGTTGACTGCTTCTC 1105
| ||||| | |||| |||| ||||| | || | |||||| || | | || ||||||||
Sbjct 1068 TCGATGG-TGTGCTCACTGATTTTCCTA-TATCTGCATCTGCATCCCTCGATTGCTTCTC 1125
Query 1106 CCATC-TTGGAAGTAATGCTTCATCACAAGTGGATTTTCTTGTTATATCCAAAAATGGAG 1164
||| | |||| || || ||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1126 CCA-CATTGGCAGAAACGCTACAAAACAAGTGGATTTTCTTGTTATATCCAAAAATGGTG 1184
Query 1165 CAAGTGGAGACTACCCTGGCTGTACTGACTTGGCCTAT-ACAAAGGCTATCAAAGATGGT 1223
| ||||||||||| ||||| ||||| |||||||| ||| | || ||| ||||||||||||
Sbjct 1185 CGAGTGGAGACTATCCTGGATGTACAGACTTGGCATATGAGAA-GGCAATCAAAGATGGT 1243
Query 1224 GCTGATGTTATCGATTGTTCTCTTCAAATGTC-ATCAGACGGGATTCCGTTTTGCTTAAG 1282
|||||||| |||||||| || | |||||||| | | ||||| | || ||||||||||
Sbjct 1244 GCTGATGTAATCGATTGCTCGGTCCAAATGTCCAGC-GACGGCACACCCATTTGCTTAAG 1302
Query 1283 TTCAATAAATCTTGGGGAGAGCACGAAC-GTTGTCCAAAGTCCTTTCAGAAACCGTTCTA 1341
||| || |||| ||| | ||||| ||| |||| || || | |||||||||||||||| |
Sbjct 1303 TTCGATCGATCTCGGGAACAGCAC-AACAGTTGCCCTAACTGCTTTCAGAAACCGTTCAA 1361
Query 1342 CAACTGTTCCTGAGATCGGCTCACTTCCTGGAATATACAGCTTT-AGTCTGGCATGGTCT 1400
|||||||||||||| | ||||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct 1362 CAACTGTTCCTGAGTTGGGCTCACTTGGTGGAATATACA-CTTTCAGTCTCACATGGCCT 1420
Query 1401 GAGATTCAGACCTTGAGACCTGCTATTGAAAACCCCTACAGCAGGGAATTCACTATGTTT 1460
||||| |||||||||| ||||||||| |||||||||| | | | ||||| |||||
Sbjct 1421 GAGATCCAGACCTTGACTCCTGCTATTTCAAACCCCTAC-G--GTGTATTCAGGCTGTTT 1477
Query 1461 AGGAATCCAAGGGAGAGAAGTTCCGGGAAG-TTTGTTTCACTTTCTGATTTCTTGAACTT 1519
|||||||||| ||| || | | |||||| ||| |||||||||||||||| || |||||
Sbjct 1478 AGGAATCCAAACCAGAAAAATGCTGGGAAGCTTT-TTTCACTTTCTGATTTTTTAAACTT 1536
Query 1520 GGCAAAAAACTCCAGCTCTCTCACCGGTGTTTTGATCAGCGTGGAGAATGCAACATATCT 1579
|||||| ||||||| ||||||| |||||||||||||||| || |||||||| |||| ||
Sbjct 1537 GGCAAAGAACTCCACCTCTCTCTCCGGTGTTTTGATCAGTGTAGAGAATGCGGCATACCT 1596
Query 1580 GAGAGAGAAGCAAGGGCTCGATGCTGTTAAGGCAGTTCTCGATACACTCACAGA-AGCTG 1638
||||||||| ||||||||||| | |||||| || ||||| |||||||||||| | | |||
Sbjct 1597 GAGAGAGAATCAAGGGCTCGACGTTGTTAAAGCGGTTCTTGATACACTCACACAGA-CTG 1655
Query 1639 GTTACAGCAACAAGACAACAACCACAAGGGTTATGATTCAGTCAACTAACAGCTCAGT-C 1697
| |||||||| || ||| | || | |||| | |||||||||||||| ||||||||||| |
Sbjct 1656 GCTACAGCAATAATACAGCCAC-A-AAGG-TCATGATTCAGTCAACAAACAGCTCAGTTC 1712
Query 1698 TTAATTGACTTCAAGAAACAGAGCCGGTATGAGACAGTGTACAAAGTCGAAGAAACCATC 1757
| | ||||||||||||| |||||| ||| ||||| || || ||||| ||||||| ||||
Sbjct 1713 T-AGTTGACTTCAAGAAGCAGAGCAAGTACGAGACTGTCTATAAAGTTGAAGAAAACATC 1771
Query 1758 CGCGACATTCTCGACACTGCAATCGAAGACATTAAGAAATTTGCGGATGCTGTTGTCATT 1817
|| || ||||||||| |||| || |||||||| |||||||| || ||||||||||| ||
Sbjct 1772 CGTGATATTCTCGACTCTGCTATTGAAGACATAAAGAAATTCGCTGATGCTGTTGTGATC 1831
Query 1818 AGTAAAAA--ATCAGTCTTCCC-CACCAGCGAAAGT--TTCACCACTG-GACAAACTAAA 1871
||||| ||||||||| || | | || | || |||| ||| | ||||| ||
Sbjct 1832 C--AAAAATCATCAGTCTTTCCTCTC--GCTCA-GTCGTTCATCACAACG-CAAACCAAT 1885
Query 1872 CTAGTGGAGAGGCTGCAGAAGTTTCAGCTCCCCGTTTACGTTGAAGTGTTCC-GAAATGA 1930
| ||||||| ||||||||||| ||||||||| ||||| || ||| |||| | ||| |||
Sbjct 1886 GTTGTGGAGAAGCTGCAGAAGTCTCAGCTCCCAGTTTATGTGGAACTGTTTCAGAA-TGA 1944
Query 1931 GTTTGTT-TCTCAACCATGGGATTTCTTCGCTGATGCAACTGTCGAGATAAACTCGCATG 1989
|||| || |||||||||| || ||||| ||||||||||| || ||||||||||| ||
Sbjct 1945 GTTT-TTATCTCAACCATATGACTTCTTTGCTGATGCAACCGTTGAGATAAACTCTTATA 2003
Query 1990 TTACTGGAGCTGGTATCAATGGAACCATCACTGAGTTCCCTCTCACAGCCGCGAGATACA 2049
| |||||||| ||||| || ||||||||||| ||||| ||| ||||||| || |||||||
Sbjct 2004 TCACTGGAGCCGGTATAAACGGAACCATCACCGAGTTTCCTTTCACAGCTGCAAGATACA 2063
Query 2050 AAAGGAA-CTCGTGCTTGACCCGCAAAGA--CGTGCCTCCTTACATGATCCCAGTTCAGC 2106
||||||| || ||| ||| | ||||| | | ||||||||| ||| | || |
Sbjct 2064 AAAGGAATCT-GTGTTTGGGAAGAAAAGAAAC-TATA-CCTTACATGGCCCCTGCCCAAC 2120
Query 2107 CCGCTGGCCTCTTAACCATCGTGAGTCCTGCTTCGTTACCTCCAGCCGAAGCACCAAGCC 2166
||| || |||||||||| | ||||||||| | || |||||||||||| |||| |||||||
Sbjct 2121 CCGGTGCCCTCTTAACCCTTGTGAGTCCTACGTCCTTACCTCCAGCCCAAGCTCCAAGCC 2180
Query 2167 CAGTTTTCACAGATGCTGATGTCACTGAACCACCATTACCTCCAGTC-TCAGCCAGAGCC 2225
| ||||||| |||||||||||||||||| |||||| ||||||| || | ||| | ||||
Sbjct 2181 CGGTTTTCATAGATGCTGATGTCACTGAGCCACCACTACCTCCGGTTAT-AGCAAAAGCC 2239
Query 2226 CCAACCACCACCCCTGGA-CCTCAATCAAC-AGGTGAA-AAGTCTCCCAACGGACAAACC 2282
|||||| | ||||||||| || || ||||| | || | ||| | || | |||||||||
Sbjct 2240 CCAACCTCAACCCCTGGAACCCCA-TCAACCAA-TGCACAAG-CACCTAGTGGACAAACC 2296
Query 2283 CGAGTCGCTCTATCTCTTCTTCTCTCTGCATTCGCTACGGTT-TTCGCCTCTCTTCTACT 2341
||| || |||||||| |||| || || | || || | |||| || ||||| ||||||||
Sbjct 2297 CGAATCACTCTATCTGTTCTACTTTCCGTTTTTGCAATGGTTCTT-GCCTCCCTTCTACT 2355
Query 2342 TCTGTGATCA 2351
||||||||||
Sbjct 2356 TCTGTGATCA 2365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100367795575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5