BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55490.1
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495632 jgi|Araly1|495632|fgenesh2_kg.8__1448__AT5G55490.1 2848 0.0
> Ahg495632 jgi|Araly1|495632|fgenesh2_kg.8__1448__AT5G55490.1
Length=1981
Score = 2848 bits (1542), Expect = 0.0
Identities = 1846/1990 (93%), Gaps = 32/1990 (2%)
Strand=Plus/Plus
Query 1 GTTCTGTCTCTTTTGTTTGTTCGTAGGTGATCAATCACAAGGCTCCTCGAGAAGAAGAAG 60
|||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1 GTTCTGTCTCTTTTGTTTGTTCGTAGGTGATCAATCACAAATCTCCTCAACAAGAAGAAG 60
Query 61 ATCTCAAATCCGATTAAATGGATCGTTTCAGCAGAAAATGTCTTCTGTTTCTTCTATTGA 120
||| ||| ||||||||||||||||||| |||||||||| |||| || | |||||||||
Sbjct 61 ATCAAAAAACCGATTAAATGGATCGTTTGAGCAGAAAATTTCTTATG--T-TTCTATTGA 117
Query 121 TCATACTTTTAGATTCTCCATTAACATGCCACAGTTGGGGATGGTTCTCTTC-T--TCTT 177
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 118 TCGTACTTTTAGATTCTCCATTAACATGCCACAGTTGGGGATGGTTCTCTTCTTCCTCTT 177
Query 178 CTTCCTCAGCAGAAGATCCATACTCTTCTTCTTTTTCTCGGTCTCGCAAATCCAACCCCG 237
||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||| |
Sbjct 178 CTTCCTCAGCAAAAGATACATACTCTTCTTCTTTCTCTCGGTCTTACAAATCCAACCCGG 237
Query 238 ACTTCTCCATGGAAGTTTTCAGTGATCAGAAGGCGGTTCAAGTCCTT------G---AAA 288
||||||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 238 ACTTCTCCATGGAAGTTTTCAGTGATCAGAAGGCGGTTCGAGTCCTTAAAGACGCTAAAA 297
Query 289 ACAAGCTTGTTGGTCTAACCAGTTGCTGGCAAAATGCTTATAGTTACCTCTTGGCTGGCT 348
|||| |||| ||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 ACAAACTTGATGGTCCAAACAGTTGCTGGCAAAATGCTTATAGTTACCTCTTCACTGGCT 357
Query 349 GCAAAGAAACGATTGCTACAGAAGAAAAGAGAAAGAGATTTGCTTGGTATTTGAGCGATT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 358 GCAAAGAAACGATTGCTACAGAAGAAAAGAGAAAGAGATTTGCTTGGTATTTGAGTGATT 417
Query 409 GCTTCATCAAAGACTCGGGAAGACCGGCGTTTCCAACCTGTAAAGATGAATCAGTAATGA 468
||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||
Sbjct 418 GCTTCATCAAAGACTCGGGAAGAACTGCTTTTCCAACCTGTAAAGATGAATCAACAATGA 477
Query 469 TGAGTTGCCTCAAGAAGCTTGATGATCATGAGCATAAGATCTATCTCGATTTCTTGCTTG 528
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAGTTGCCTCAAGAAGCTGGATGATCATGAGCATAAGATCTATCTCGATTTCTTGCTTG 537
Query 529 AAACCAACACCATCTGCCAACAATTACAGAGTAATGCGTTCAAAAATGAGATAGAGAGGC 588
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 538 AAACCAACACCATCTGCCAACAATTACAGAGTTATGCATTCAAGCATGAGATAGAGAGGC 597
Query 589 TTGTGAATGAGCTCAAGAATACAGCTCAGTATACAGAAGATAAATTGGATATCTTGGAGA 648
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTGTGAATGAACTCAAGAGTACAGCTCAGAATACAGAAGATAAATTGGATATCTTGGAGA 657
Query 649 GTAAATCTGATGCTTTAATACAGACCTCAAGCATGATTCATGATTCTTTAGGGTCACTAG 708
||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 658 GTAAATCTGATTCTTTAATACAGACCTCGAGCATGATTCATGATTCTTTAGGTTCACTAG 717
Query 709 ATGTTCGGGTTCAAAACGTGGCT-AGTGTGACAAACACCTTAGAAACTAGTGTGAGTGGA 767
|||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 718 ATGTCCGGGTTCAAAACGTGGCTCA-TGTGGCAAACACCTTAGAAACTAGTGTGAGTGGA 776
Query 768 TTATCTCAACAAACAGTAGAAATCTCTCAAGAACAGAAGAACATTGCAGAATCACAGCTA 827
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 CTGTCTCAACAAACTGTAGAAATCTCTCAAGAACAAAAGAACATTGCAGAATCACAGCTT 836
Query 828 GCTCTCAGGGACGGTCAAGTAAAGATGAAAGAAACGTTGAAAGATGGAATGGACATGTTC 887
|| || | |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 837 GCGCTAATGGACGGTCAAGTGAAGATGAAAGAAACGTTGAAAGATGGAATGGAGATGTTC 896
Query 888 CTCGATGCGTATACTAACATCCAAGAAGGAGTAGATAAGTTGAAGAGTGATAC-AGAGCA 946
|||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct 897 AGCGATGCGTATACTAACATCCAAGAAGGAGTAGATAAGTTGAAAAGCGATACTA-AGCA 955
Query 947 GATTGAGGTGGAAATAAGTGTACTTGGAAATAACCTATCAACCAAAATGATAGATTTGCA 1006
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 GATTGAGGTGGAAATAAGTGTACTTGGAAATAACCTATCAACCAAAATGGTAGATTTGCA 1015
Query 1007 GAGTACAACCGATGACATCGGAACAAAGACTCGTAGTTCGTTGGATAAACAACAGAAGCT 1066
|||||||||||| |||||||||| ||| || ||||||||||||| ||||||||||||||
Sbjct 1016 GAGTACAACCGAAGACATCGGAATTAAGGCTGGTAGTTCGTTGGAAAAACAACAGAAGCT 1075
Query 1067 TTTAGACGGCCAAACCGTGGCTCTTGACGGTATTCAGTTTCTTACCCGGTTTCAGTCTGA 1126
||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1076 TTTAGACGGGCAATCTGTGGCTCTTGACGGTATTCAGTTTCTTACTCGGTTTCAGTCTGA 1135
Query 1127 GGCACTGCAAGAGAGTAGGAATACATTGCAACGTTTGAAAGAATTTAGTCAGGAGCAACA 1186
|||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||
Sbjct 1136 GGCACTGCAAGAGAGTAGGAGTACCTTGAAACGTTTGACGGAATTTAGTCAGGAGCAACA 1195
Query 1187 AGAAGATCTTGCAAAGCGGCAAGAAAAGCTTCAGGAGGTTCATGATCACTTGTTTGAAAA 1246
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 GGAAGATCTTGCAAAGCGGCAAGAAAAGCTTCAGGAGGTTCATGATCACCTGTTTGAAAA 1255
Query 1247 TTCAAAATCAATGTTGGAAGCCCAGGTAGCGTTTGAGGCTAAACAAGCAAACATGTTTGT 1306
||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 1256 TTCAAAATCAATGTTAGAAGCTCAGGAAGCGTTTGAGGCGAAACAAGCAAACATGTTTGT 1315
Query 1307 AGCTTTGGATAAGCTGTTTGCTTTGCACAATGCGATGCTTCTCGAGTCGCGAGTGATAAA 1366
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1316 AGCTTTGGATAAGCTGTTTGCTCTGCACAATGCGATGCTTCTCGAGTCCCGAGTGATAAA 1375
Query 1367 AGCCTTTGTCATCTACTTCTTGTCAATCTTTGTCATCTACATGTTTACAAGCACAAAACA 1426
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1376 AGCCTTCGTCATCTACTTCTTGTCAATCTTTGTCATCTACATGTTTACAAGTACAAAACA 1435
Query 1427 AACTTATATCATAAGGCCAAGGCTTTACATTGGTTTGTGCGTTACTCTGGCATTAGAAGT 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AACTTATATCATAAGGCCAAGGCTTTACATTGGTTTGTGCGTTACTCTGGCATTAGAAGT 1495
Query 1487 GGCGAGTTTACGATACGTGAATGATACAGAACGCCAAGCATGGATGATAAACCTTATCAG 1546
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1496 GGCAAGTTTGCGATACGTGAATGATACAGAACGCCAAGCATGGATTATAAACCTAATCAG 1555
Query 1547 GTCTTTATTTGCTCTTCTTGCTTCAGCTCAGCTTCTACATGCTGCTTTGTCATACAGGGA 1606
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1556 GTCTTTATTTGCTCTTCTTGCTTCAGCTCAGCTTCTTCATGCTGCTTTTTCATACAGGGA 1615
Query 1607 CTATGAAGTACTAAACCATCAAATCTTGCTAAGATTAGTTGATAAAGTGAATGACATGCA 1666
|||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||
Sbjct 1616 CTATGAAGTACTAAACCATCAAATCTTGTTAAGATTAGTTGATAAGGTTAATGGCATGCA 1675
Query 1667 AAGCAAGAAAGAGCTCTCGTACGATGAAGATACAGAGAGCGAGGTAGATTGGACATCTTG 1726
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AAGCAATAAAGATCTCTCGTACGATGAAGATACAGAGAGCGAGGTAGATTGGACATCTTG 1735
Query 1727 GGTTGATACAGATTTAACTGATGATGATGACAATCTTGCAGATCCTGATTACAAAATCCC 1786
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1736 GGTTGATACAGATTTAACAGATGATGATGACAATCTTGGAGATCCTGATTACAGAATTCC 1795
Query 1787 ACTACTGATCAAAGACAATCCGGTTACTACTTCATCATTGACTAGAAGATTGTATAATTT 1846
|||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1796 ACTAGTGATCAAGGACAATCCGGTTACCACTTCATCAATGACTAGAAGATTGTATAATTT 1855
Query 1847 CCGTCCACGATAGCCACCAAAGTTTTTCACTCAAAGTCGAAACTACATTAGTCATAT-AT 1905
| |||||||||||||| |||| | |||||||||| || |||||||||||||| ||| ||
Sbjct 1856 CAGTCCACGATAGCCAGCAAA-TCTTTCACTCAA-GTTGAAACTACATTAGTTTTATTAT 1913
Query 1906 GTATC-TTAGGGAAACTTCACATTGT----ATC---TGGATCAAAACTATAATTATATGC 1957
|| | |||||||||||| ||||||| | | |||||||||||||||||||||||
Sbjct 1914 -TA-CATTAGGGAAACTTTACATTGTTCCCAGCCAGTGGATCAAAACTATAATTATATGG 1971
Query 1958 TATAGTTTTT 1967
||||||||||
Sbjct 1972 TATAGTTTTT 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5