BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55500.1
Length=2045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950201 jgi|Araly1|950201|scaffold_802088.1 2468 0.0
> Ahg950201 jgi|Araly1|950201|scaffold_802088.1
Length=1646
Score = 2468 bits (1336), Expect = 0.0
Identities = 1544/1640 (94%), Gaps = 32/1640 (2%)
Strand=Plus/Plus
Query 216 gagagagagagaTGAGTAAACGGAATCCGAAGATTCTGAAGATTTTTCTGTATATGTTAC 275
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAGAGAGAGATATGAGTAAACGGAATCCGAAGATTCTGAAGATTTTTCTGTATATGTTAC 70
Query 276 TTCTCAACTCTCTCTTTCTCATCATCTACTTCGTTTTTCACTCATCGTCGTTTTCACCGG 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TTCTCAACTCTCTCTTTCTCATCATCTACTTCGTTTTTCACTCATCGTCGTTTTCACCGG 130
Query 336 AGCAGTCACAGCCTCCTCATA--TATAC-----CACGTTTCAGTGAATAACCAATCGGCG 388
|||||||||| |||| | ||| | ||| |||||||||||||||||||||||||||
Sbjct 131 AGCAGTCACATCCTCAT-ATACCTTTACGGTTTCACGTTTCAGTGAATAACCAATCGGCG 189
Query 389 ATTCAGAAACCGTGGCCGATCTTACCTTCTTACCTCCCATGGACGCCGCCGCAGAGGAAT 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 ATTCAGAAACCGTGGCCGATCTTACCTTCTTACCTCCCATGGACGCCGCCGCAGAGGAAT 249
Query 449 CTACCAACTGGCTCCTGCGAAGGTTACTTCGGGAATGGATTTACAAAGAGAGTTGACTTC 508
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 250 CTACCAACTGGCTCCTGCGAAGGCTACTTCGGGAATGGATTTACAAAGAGAGTTGACTTC 309
Query 509 CTTAAGCCGAGGATTGGAGGAGGAGGAGAAGGAAGCTGGTTCCGATGTTTTTACAGTGAG 568
|||||||| ||||| |||||||||||||||| || ||||| |||||||||
Sbjct 310 CTTAAGCC-----------GAGGA-GAGAAGGAAGCTGGTTTCGTTGTTTCTACAGTGAG 357
Query 569 ACATTACAGAGTTCGATTTGTGAAGGAAGGAATCTGAGAATGGTTCCGGATCGGATTGTT 628
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGTTACAGAGTTCGATTTGTGAAGGAAGGAATCTGAGAATGGTTCCGGATCGGATTGTT 417
Query 629 ATGTCgagaggaggtgagaagttagaggaagttatggggaggaaagaggaggaggagCTT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ATGTCGAGAGGAGGTGAGAAGTTAGAGGAAGTTATGGGGAGGAAAGAGGAGGAAGAGCTT 477
Query 689 CCTGCGTTTCGACAAGGTGCGTTTGAGGTAGCGGAAGAGGTTTCTTCACGGTTAGGTTTT 748
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 CCTGAGTTTCGACAAGGTGCGTTTGAGGTGGCGGAAGAGGTTTCTTCACGGTTAGGTTTT 537
Query 749 AAGAGACACCGTCGTTTTGGT----G-G-AGGA-GA--AGGAGGTAGTGCGGTTTCTCGG 799
||||||||||||||||||||| | | |||| || |||||| |||| ||||||||||
Sbjct 538 AAGAGACACCGTCGTTTTGGTGGAGGAGAAGGAGGAGGAGGAGGCAGTGTGGTTTCTCGG 597
Query 800 CGGCTGGTGAATGATGAGATGTTGAATGAATATATGCAAGAAGGTGGAATTGATAGACAT 859
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 598 CGGCTGGTGAATGATGAGATGCTGAATGAGTATATTCAAGAAGGTGGAATTGATAGACAT 657
Query 860 ACAATGAGAGATTTGGTTGCTTCGATTCGTGCTGTTGATACCAATGATTTCGTTTGTGAA 919
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 ACAATGAGAGATTTGGTTGCTTCGATTCGTGCTGTTGATACCAAAGATTTCGTTTGTGAA 717
Query 920 GAGTGGGTGGAGGAACCGACCTTGCTTGTCACTAGATTCGAGTACGCAAATCTCTTCCAT 979
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 718 GAGTGGGTGGAGGAACCAACCTTGCTTGTCACTAGATTTGAGTATGCAAATCTCTTCCAT 777
Query 980 ACTGTGACAGATTGGTATAGTGCCTATGTTTCGTCTAGAGTCACCGGTTTGCCTAATCGA 1039
|| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 778 ACCGTGACGGATTGGTATAGCGCTTATGTTTCCTCTAGAGTCACCGGTTTGCCTAATCGA 837
Query 1040 CCTCACGTTGTTTTCGTTGACGGACACTGCACGACGCAGCTAGAAGAAACATGGACAGCT 1099
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCACACGTTGTTTTCGTTGATGGACACTGCACGACGCAGCTAGAAGAAACATGGACAGCT 897
Query 1100 TTGTTTTCCGGAATCAGATACGCAAAGAACTTCACCAAACCGGTTTGTTTCCGCCACGCG 1159
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 898 TTGTTTTCCGGAATTAGATACGCAAAGAATTTCACCAAACCGGTTTGTTTCCGCCATGCG 957
Query 1160 ATTCTTTCACCATTGGGATACGAAACCGCTCTTTTTAAAGGCTTGTCCGGAGAAATAGAC 1219
|||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||
Sbjct 958 ATTCTTTCACCATTGGGATACGAAACTGCGCTTTTTAAAGGCTTGACGGGAGAAATAGAT 1017
Query 1220 TGCAAGGGAGATTCAGCTCACAATCTGTGGCAAAACCCGGACGATAAAAGGACTGCGAGG 1279
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGCAATGGAGAATCAGCTCACAATCTGTGGCAAAACCCGGACGATAAAAGGACTGCGAGG 1077
Query 1280 ATATCAGAGTTTGGTGAAATGATCAGAGCAGCTTTCGGGTTGCCTGTCAATAGACACCGC 1339
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1078 ATATCAGAGTTTGGCGAAATGATCAGAGCAGCTTTCGGATTTCCTGTCAACAGACACCGC 1137
Query 1340 TCATTAGAAAAGCCGCTatcatcatcatcatcatcaGCCTCAGTTTATAATGTTCTTTTT 1399
||||||||||| |||| |||||||||||||||||| | || ||| |||| ||||| |||
Sbjct 1138 TCATTAGAAAAACCGCCATCATCATCATCATCATC--C-TCTGTTCATAACGTTCTCTTT 1194
Query 1400 GTCCGCCGTGAAGATTACTTAGCCCATCCTCGTCATGGCGGTAAAGTCCAGTCTCGGCTC 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTCCGCCGTGAAGATTACTTAGCCCATCCTCGTCATGGCGGTAAAGTCCAGTCTCGGCTC 1254
Query 1460 ATCAATGAGGAAGAAGTGTTCGACTCGTTGCATCATTGGGTTGCAACTGGGTCCACCGGT 1519
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1255 ATCAACGAGGAAGAAGTGTTCGACTCGTTGCATCATTGGGTCGCGACTGGCTCCACCGGT 1314
Query 1520 CTGACCAAATGCGGGATTAACCTTGTGAATGGCTTGCTTGCACACATGTCAATGAAAGAT 1579
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1315 CTGACCAAATGTGGGATTAACCTTGTGAATGGCTTGCTCGCACACATGTCAATGAAAGAT 1374
Query 1580 CAAGTCCGAGCCATTCAAGATGCTTCAGTGATCATAGGAGCTCATGGAGCAGGACTGACT 1639
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1375 CAAGTCCGAGCCATCCAAGATGCGTCAGTGATCATAGGAGCTCATGGAGCAGGACTCACT 1434
Query 1640 CACATTGTCTCTGCAACACCAAACACAACGATATTTGAGATAATAAGCGTCGAGTTTCAG 1699
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1435 CACATTGTATCTGCAACACCAAACACAACGATATTTGAGATAGTGAGCGTCGAGTTTCAG 1494
Query 1700 AGACCTCATTTCGAGCTTATAGCTAAGTGGAAAGGATTGGAGTATCACGCGATGCATCTG 1759
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1495 AGACCTCATTTCGAGCTCATAGCTAAGTGGAAAGGATTGGAGTATCATGCGATGCATCTG 1554
Query 1760 GCGAACTCACGAGCGGAACCAACGGCTGTGATTGAGAAGTTAACGGAGATCATGAAGAGC 1819
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 GCGAACTCACGAGCGGAACCAACGGCTGTGATTGAGAAGTTAAAGGAGATCATGAAGAGC 1614
Query 1820 CTTGGCTGCTAAAGACAAAA 1839
||||||||||||||| ||||
Sbjct 1615 CTTGGCTGCTAAAGAAAAAA 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76904204655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5