BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55507.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950202 jgi|Araly1|950202|scaffold_802089.1 279 1e-74
> Ahg950202 jgi|Araly1|950202|scaffold_802089.1
Length=307
Score = 279 bits (151), Expect = 1e-74
Identities = 261/308 (85%), Gaps = 31/308 (10%)
Strand=Plus/Plus
Query 132 AACATGCTCAATTAATCCACATGGATTATGGTCACGTTACTCCTCCTCCTC-C-TCAAAA 189
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 AACATGCTCAATTAATCCACATGGATTATGGTCACGTTACTCCTCCTCCTCACGCCAATT 60
Query 190 CT-T---TCT---GCCACCGTGGCAACAA-TATTCGCCGATGTATCAACAGGTGTCGGCG 241
|| | ||| ||||||||||| |||| || ||||||||||||| | | ||| ||
Sbjct 61 CTCTAAATCTGCCGCCACCGTGGCCACAATTA-TCGCCGATGTATC-A-A----TCGCCG 113
Query 242 CCAATGTCTCCGATGTCTCAGTATATGAACTACCAACAATTTCCGTATACTGAACAACAA 301
| | | || | | | |||||||||||||||||||||||||| ||| | |||||
Sbjct 114 TC---GGCGCC-A---C-C-GTATATGAACTACCAACAATTTCCGTTTACCG---AACAA 161
Query 302 CAACCTCCTGCGACGTATCCGTATTATTATTATCCTTATTACGTACCGGAAATGTGGTAT 361
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 162 CAGCCTCCTGTGACGTATCCGTATTATTATTATCCTTATTACGTACCGGAAATGTTGTAT 221
Query 362 TCTTCGCCGCCGCAGTTACCGACGCGAGACGGCGTTACCGGCGAGCCACAGTGTCGGATT 421
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 222 TCTCCGCCGCCGCAGATACCGACGCGAGACGGAGTTACCGGCGAGCCACAGTGTCGGATT 281
Query 422 -TTGTGAA 428
|| ||||
Sbjct 282 CTT-TGAA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5