BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55510.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1 1146 0.0
Ahg945400 jgi|Araly1|945400|scaffold_701629.1 531 4e-150
> Ahg495634 jgi|Araly1|495634|fgenesh2_kg.8__1450__AT5G55510.1
Length=817
Score = 1146 bits (620), Expect = 0.0
Identities = 769/837 (92%), Gaps = 26/837 (3%)
Strand=Plus/Plus
Query 1 GTGTTTGGCTACAGG--T-AAAA-AAGCAAACTCTGTTTCTAATTTTTGAAGATTAGGTA 56
||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||
Sbjct 1 GTGTTTGGCTACAGGTATAAAAATAAACAAACTCTGTTTCTAATTTTTGAAGATTAGGTA 60
Query 57 GAAAACGAAAGTGTGTCTTCAAGCTTCAAAGAGGTCTTAAGCTATGGCGGCCGAGAATTC 116
|||| ||||| ||||||||||| |||| ||||||| |||||||||||||| ||||||||
Sbjct 61 GAAATCGAAA-AGTGTCTTCAAGTTTCAGAGAGGTCATAAGCTATGGCGGCTGAGAATTC 119
Query 117 TTCAAACGCTATTAACGTCGATACGAGTCTCGATTCCGATTCAAAACCTAACCGTGACGC 176
||||||||| ||| |||||| |||||||||| ||||||||||||||||||||| ||| ||
Sbjct 120 TTCAAACGCCATTGACGTCGGTACGAGTCTCAATTCCGATTCAAAACCTAACCATGAAGC 179
Query 177 TAATGATATGACTGATCATGACTCTTCTTCTAAAGCATTGGTAATCCCTGCTCCCGCCGT 236
||||||| ||||| ||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 180 TAATGATGTGACTAATCATGACTCTTC--C-AAAGCATTGGTAATCCCTTCTCCCGCCGT 236
Query 237 TTGTCTTGTACGTTTCGCCGGAGATGCTGCTAGTGGCGCATTCATGGGCTCTGTATTTGG 296
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 237 TTGTCTCGTACGTTTCGCCGGAGATGCTGCTAGTGGCGCCTTCATGGGCTCTATATTTGG 296
Query 297 CTATGGCTCTGGATTGTTTAAGAAGAAAGGGTTTAAAGGATCATTTGTGGATGCGGGTCA 356
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATATGGTTCTGGATTGTTTAAGAAGAAAGGGTTTAAAGGATCATTTGTGGATGCGGGTCA 356
Query 357 GTCTGCAAAGACTTTTGCGGTTTTATCTGGAGTACACAGTTTAGTTGTTTGCCTTCTAAA 416
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 357 GTCTGCAAAGACTTTTGCGGTTTTATCTGGAGTACATAGTTTGGTTGTTTGCCTTCTGAA 416
Query 417 ACAAATACGAGGCAAAGATGACGCCATTAATGTTGGAGTTGCTGGGTGTTGTACTGGCCT 476
||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 417 GCAAATACGAGGGAAAGATGATGCCATTAATGTTGGAGTTGCTGGATGCTGTACTGGCCT 476
Query 477 TGCTCTTAGTTTCCCCGGTGCACCGCAAGCAATGCTACAGAGTTGTCTCACTTTTGGTGC 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 TGCTCTTAGTTTCCCCGGTGCACCGCAAGCAATGCTACAGAGTTGTCTTACTTTTGGTGC 536
Query 537 CTTCTCCTTCATCCTTGAAGGACTCAACAAAAGACAAACGGCTTTGGCTCACTCTGTCTC 596
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 CTTCTCCTTCATCCTTGAAGGGCTCAACAAAAGGCAAACGGCTTTGGCTCACTCTGTCTC 596
Query 597 GTTTAGACAACAAACCAGAAGTCCCCAACATGATTTACCGCTGCTCTCGTTGGCTATCCC 656
||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 597 GTTGAGACACCAAACCAGAAGTATCCAACATGATTTACCGCTGCTCTCGTTGGCTCTCCC 656
Query 657 AATCCATGATGAAATCAAAGGAGCTTTCTCTTCTTTCTGCAACTCCTTAACGAAACCCAA 716
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AGTCCATGATGAAATCAAAGGAGCTTTCACTTCTTTCTGCAACTCCTTAACGAAACCCAA 716
Query 717 GAAGCTCAAATTTCCTCATGCTCGTTGAtttttttcctactttattcttttgcctttttg 776
||||||||||||||||| ||||||||||||||||||||||||| | | |
Sbjct 717 GAAGCTCAAATTTCCTCGTGCTCGTTGATTTTTTTCCTACTTT-T------G--T----- 762
Query 777 tagattttgaaaacagatt--gaaaaatggtttttgATGCATGAGCCAATGAGAAAA 831
|||||||||||||||||| ||||||||||| | | ||||||||||||||||||||
Sbjct 763 -AGATTTTGAAAACAGATTTTGAAAAATGGTTCT-GCTGCATGAGCCAATGAGAAAA 817
> Ahg945400 jgi|Araly1|945400|scaffold_701629.1
Length=673
Score = 531 bits (287), Expect = 4e-150
Identities = 538/655 (82%), Gaps = 34/655 (5%)
Strand=Plus/Plus
Query 96 AGCTATGGCGGCCGA-GAATTCTTCAAACGCTATTAACGTCGATACGAGTCTCGATTCCG 154
||||||||||||| | | |||||||||| |||||| || |||| || ||||| ||||
Sbjct 17 AGCTATGGCGGCCAATG-ATTCTTCAAAAGCTATTGACATCGACGGGAACCTCGACTCCG 75
Query 155 ATTCAAAACC-TAAC-CGTGACGCTAATGATA-TGACTGATCATGACTCTTCTTCTAAA- 210
|||| ||||| |||| | ||||| | | || | ||| ||| |||| ||| || |||
Sbjct 76 ATTC-AAACCTTAACAC-TGACGGTGACGA-AGCGACAGATAATGA---TTCCTC-AAAG 128
Query 211 GCATTGG-TA--ATCCCTGCTCCCGCCGTTTGTCTTGTAC-GTTTCGCCGGAGATGCTGC 266
||||||| || ||||||||||| |||||||||||| | | |||| ||||||||||||||
Sbjct 129 GCATTGGCTACTATCCCTGCTCCAGCCGTTTGTCTTTTCCGGTTT-GCCGGAGATGCTGC 187
Query 267 TAGTGGCGCATTCATGGGCTCTGTATTTGGCTATGGCTCTGGATTGTTTAAGAAGAAAGG 326
| ||||||| ||||||||||| | || || ||||| || |||||||| |||||||||||
Sbjct 188 TGGTGGCGCCGTCATGGGCTCTATCTTCGGATATGGTTCAGGATTGTTCAAGAAGAAAGG 247
Query 327 GTTTAAAGGATCATTTGTGGATGC-GGGTCAGTCTGCAAAGACTTTTGCGGTTTTATCTG 385
|||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||||||||
Sbjct 248 CTTTAAAGGATCATTTGCAGATGCAGGG-CAGTCTGCTAAGACTTTTGCTGTTTTATCTG 306
Query 386 GAGTACACAGTTTAGTTGTTTGCCTTCTAAAACAAATACGAGGCAAAGATGACGCCATTA 445
|||| |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 307 GAGTCCACAGTTTGGTTGTTTGTCTTCTGAAGCAAATCCGAGGCAAAGATGACGCCATTA 366
Query 446 ATGTTGGAGTTGCTGGGTGTTGTACTGGCCTTGCTCTTAGTTTCCCCGGTGCACCGCAAG 505
||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || || |
Sbjct 367 ATGTTGGAGTTGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCCTGGTGCTCCACAGG 426
Query 506 CAATGCTACAGAGTTGTCTCACTTTTGGTGCCTTCTCCTTCATCCTTGAAGGACTCAACA 565
| | |||||||| ||||| || ||||| || ||||| || || || || ||||||||||
Sbjct 427 CTCTACTACAGAGCTGTCTTACGTTTGGGGCTTTCTCTTTTATACTCGAGGGACTCAACA 486
Query 566 AAAGACAAACGGCTTTGGCTCACTCTGTCTCGTTTAGACAACAAACCAGAA-GTCCCCA- 623
|||||||||| |||||||| ||||| |||||||| ||||| |||||| || || || |
Sbjct 487 AAAGACAAACAGCTTTGGCACACTCGGTCTCGTTGAGACACCAAACCGGACTGTTCCAAG 546
Query 624 A-CATGAT--T--T--ACCGCTGCTCTCGTTGGCTATCCCAATCC-ATGATGAAATCAAA 675
| ||| || | | ||| || ||||| ||| || |||| |||| | || || ||||||
Sbjct 547 ATCATCATCGTCCTTTACCACT-CTCTC-TTG-CTCTCCCGATCCCA-GAAGATATCAAA 602
Query 676 GGAGCTTTCTCTTCTTTCTGCAACTCCTTAACGAAACCCAAGAAGCTCAAATTTC 730
||||| ||||||||||||||||| |||||| | ||||||| |||| || ||||||
Sbjct 603 GGAGCCTTCTCTTCTTTCTGCAAGTCCTTAGCTAAACCCAGGAAGTTCTAATTTC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5