BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55520.1
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917240 jgi|Araly1|917240|Al_scaffold_0008_1991 2230 0.0
Ahg492139 jgi|Araly1|492139|fgenesh2_kg.7__1572__AT4G26660.1 211 2e-53
> Ahg917240 jgi|Araly1|917240|Al_scaffold_0008_1991
Length=2373
Score = 2230 bits (1207), Expect = 0.0
Identities = 1393/1483 (94%), Gaps = 11/1483 (1%)
Strand=Plus/Plus
Query 1019 AAGCCTTTAAGTCCTACAGATTCTCTAGCTGCAAGTCTCCAGAGAGGACTAAATATTATA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 AAGCCTTTAAGTCCTACAGATTCTCTAGCTGCAAGTCTCCAGAGAGGACTGCATATTATA 957
Query 1079 GACTGTCACCA-ACGGAGCTCACTGTCAAACAGATCTTCTGTTTCCTTCTCGTTTGGGCA 1137
||||||||||| | ||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 958 GACTGTCACCAGA-GGAATTCGCTGTCAAACAGATCGTCTGTTTCCTTCTCGTTCGGGCA 1016
Query 1138 TCTCTCTCTGAAGCCTTGCGATG-AAGCCGATGATAATCTTAGTGCTTCGGTTAAATTGT 1196
||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||
Sbjct 1017 TCTCTCTCTGAAGCCTTGCGATGAAAG-C---GATAATCTTAGTGCTTCGGTTAAGCTGT 1072
Query 1197 TACAGAAAGATAGACCAAAAGAAGGTGGATCATCGATTCTCCTCTGTCTTTCTTGCAGAC 1256
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TACAGGAAGATAGGCCAAAAGAAGGTGGATCATCGATTCTCCTCTGTCTTTCTTGCAGAC 1132
Query 1257 AGAAACTTGACCAAGAAGCTCAAGGAGGATATAAGGCAATAGAAGAAGCTTGCGTGGACG 1316
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1133 AGAAACTTGACCAAGAAGCTGAAGGAGGATATAAGGCAATAGAAGAAGCTTGCGCGGACG 1192
Query 1317 AGAAGCATCTCAAGAACATGTGTGTCGAGCAGGCTACCAAAATTGAGCAGCTTACTTATC 1376
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1193 AGAAGCATCTCAAGAACATATGTGTGGAGCAGGCTACCAAAATTGAGCAGCTTACTTGTC 1252
Query 1377 AGTTAGACGAATACAAAAAGAACGCT-TTGCAGGAGTCAAGTAAGGTAACCCAACAGCTA 1435
|||||||| |||||||| ||||| || || | ||||||||||||||||| |||||| |||
Sbjct 1253 AGTTAGACCAATACAAAGAGAACACTGTT-CGGGAGTCAAGTAAGGTAAGCCAACAACTA 1311
Query 1436 ATGAAGTCTGATGATGGAGAAGATGAGACAGAGGTCGTGAAGGAAACATATGAAACAAAC 1495
||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1312 ATGAAATCCGATGATGGAGAAGATGAGACTGAGGTCGTGAAGGAAACATATGAGACAAAC 1371
Query 1496 CAACGTAGTGAAGAGTTTGGGAAAGTAAGGATTGATCTCAGTGAAAAGGAAGCTCTTCTA 1555
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1372 CAACGTAGTGAAGAGTTTGGGAAAGTAAGGATTGATCTCAATGAAAAGGAAGCTCTTTTA 1431
Query 1556 AAGGAGATTGCAGAGCTCAAAAGCAAGCTTCAGCCTACAAAATCAACGGATAATGTTAGA 1615
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1432 AAGGAGATTGCAGAGCTCAAAAGCAAGCTGCAGCCTACAAAATCAACGGATAATCTGAGA 1491
Query 1616 TCTTCGTTGCTGTTACGGTCTTTCCAAATGAGGAAGAGCATTGATTTTACCAAGAACACT 1675
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1492 TCTTCTTTGCTGTTACGGTCTTTCCAAATGAGGAAGAGCACTGATTTTACCAAGAACATT 1551
Query 1676 GAGAACAACAGCGAG-GCGCTAGAAGAAGAACGTGAGAGGTGGACAGAAATGGAGAGTGA 1734
|||||||||| || | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 1552 GAGAACAACAACG-GTGCTATAGAAGAAGAACGTGAAAGGTGGACAGAAATGGAGAGTGA 1610
Query 1735 ATGGATATCTTTAACAGATGATCTAAGGATGGATATTGATAGCCATCGTAGACACGCAGA 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1611 ATGGATATCTTTAACAGATGATCTAAGGATGGATATTGATAGCCATCGTAGACACGCTGA 1670
Query 1795 GGATCTAGAGATAGAGCTCAAGAAGGAGAAAATGGCTACAGAGGAGTTAAATGATGCTCT 1854
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GGATCTAGAGATAGAGCTCAAAAAGGAGAAAATGGCTACAGAGGAGTTAAATGATGCTCT 1730
Query 1855 AAGTAGAGCTATGCTTGGTCACAGTAGATTCATCGAGCAGTACACAGAACTGCAGGAGAA 1914
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1731 GAGTAGAGCTATGCTTGGTCACAGTAGATTCATCGAGCAGTACACAGAACTACAGGAGAA 1790
Query 1915 GTACGATGAATTAGATGAGAGGCATAGCGTGACTATGGCAGGAATAGTTGATGTGAAGAA 1974
||| |||||||||| |||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1791 GTATGATGAATTAGCTGAGAGGCATAGCGTGACGATGGCAGGAATCGTCGATGTGAAGAA 1850
Query 1975 AGCAGCGGCTAAAGCTGCTTTGAAAGGTCGCCACGGGAAGCGTTTTGCAAAAGCTTTCTC 2034
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1851 AGCAGCGGCTAAAGCTGCTCTGAAAGGTCGCCACGGGAAGCGTTTTGCAAAAGCTTTTTC 1910
Query 2035 AGCTGAACTTACTGCTATTAGAGCTGAGAAGGAGAAAGAAAGAGAATTCTTGAAAAAGGA 2094
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1911 AGCTGAGCTTACTGCCATTAGAGCTGAGAAGGAGAAAGAAAGAGATTTCTTGAAGAAGGA 1970
Query 2095 GAACAAGGGCCTTAAAATTCAGCTGCGAGATACTGTTGAAGCTGTTCAAGCTGCTGGAGA 2154
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1971 AAACAAGGGCCTCAAAATTCAACTGCGAGATACTGTTGAAGCTGTCCAAGCTGCTGGAGA 2030
Query 2155 ATTACTTGTCAGACTCCGTGAAGCTGAGCAAGCAGTTCAATCCTCTGAGGAACGTTTCGG 2214
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
Sbjct 2031 ATTACTTGTCAGACTCCGAGAAGCTGAGCAAGCTGTACAATCCTCTGAGGAACGTTTCAG 2090
Query 2215 CATAATGGAAGAAGAGAATGACAAGTTGAAACAGCAAATGGAGAAGTTAAAGAGTAAGCA 2274
| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2091 CTTAATGGAAGAAGAGAATGACAAGTTGAAGCAGCAAATGGAGAAGCTAAAGAGTAAGCA 2150
Query 2275 CAAAACAGAAATGAGCACAATGAAGCAATATCTAGCAGAAAGCAAATTACCAGGGTCTGC 2334
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2151 CAAATCAGAAATGAGCACAATGAAGCAATATCTTGCAGAAAGCAAATTACCTGGGTCTGC 2210
Query 2335 ATTAGAGGCATGGTTCAAGGAGAATGAGCAAGAAGAGGAAGAAGAGCATGTATCATCATC 2394
| ||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 2211 ACTAGAGGCATGGTTCAAGGAGAATGAGCAAGAGGAAGAAGAACAACATGTATCATCATC 2270
Query 2395 AGAACACAGAACCGGTGTTGTGAGCTATGACAACTATACAGACGATCAAGCATGGAGATC 2454
|||||||||||||||||| || ||||||||| | |||||||||||||| ||||||||| |
Sbjct 2271 AGAACACAGAACCGGTGTGGTTAGCTATGACGATTATACAGACGATCAGGCATGGAGAGC 2330
Query 2455 TGAGTTTGGAGCCATATATCAAGACCATGACCATCACTACTGA 2497
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2331 TGAGTTTGGAGCCATATATCAAGACCATGACCATCATTACTGA 2373
Score = 791 bits (428), Expect = 0.0
Identities = 549/602 (91%), Gaps = 29/602 (5%)
Strand=Plus/Plus
Query 362 AAA-GAATCTACTCAGTTTGAAGCGAAGAGTGTACTCGTCACAAGAGCTAACTCAATGGC 420
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 240 AAACGAATCGACTCAGTTTGAAGCGAAGAGCGTACTCGTTACAAGAGCTAACTCAATGGC 299
Query 421 TAATGAGATTACAGAGGAAGATGATTCATTGGGTCACCAGATTCGTGACCTAAAGGAGGA 480
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 300 TAATGAGATTACAGAGGAAGATGATTCACTGGGTGACCAGATTCGTGAACTAAAGGAGGA 359
Query 481 ACTAATAAGAACCAAGTCTGATGGGTACAAACCTGATGGAAGCAAGAATGGTTACTTTGT 540
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 360 ATTAATAAGAACCAAGTCTGATGGGTACAAACCTGATGGAAGCAAAAATGGGTACTTTGT 419
Query 541 GAGGGAG-AGTTTGAGTCAATTGAGAAACAGCATCAACAAGTCTTTAGTCATGTCGTGTG 599
||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GAGGG-GCAGTTTGAGTCAGTTGAGAAACAGCATCAACAAGTCTATAGTCATGTCGTGTG 478
Query 600 AAAACAGACAAGGTTCAGAA-AAGGAAACAATGTATGAGGAGGAGTATGATGATGATGTA 658
| |||| | ||||||||||| ||| |||||||||||||||| || | ||||||| || |
Sbjct 479 AGAACAAAGAAGGTTCAGAAGAAG-AAACAATGTATGAGGATGA-T--GATGATG-TG-A 532
Query 659 GTGGAACTGAGTAAACACATTAACAAGTTTCACACTAACTGTGATTCTGATGATTTGAGG 718
|||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 533 -TGGAACTGAGTAAACATATTAGCAAGTTTCACACTTTCTGTGATACTGATGATTTGAGG 591
Query 719 GATTCTATTCAATCCTCCTTTGCAAGTGCTTCAGGCTGTGAAGCAGATTCAATGAGTGGA 778
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 592 GATTCTATTCAATCCTCATTTGCAAGTGCTTCAGGCTGTGAAGCAGAGTCAATGAGTGGA 651
Query 779 GACGAGATTTGCTCTGTTGATAAACACAAGGAT------CACAAAGATTGTGCCTTGGCT 832
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 652 GATGAGATTTGCTCTGTTGATAAACACAAGGATGGGATTCACAAAGATTGTGCCTTGGCT 711
Query 833 GATTCTGGTCCAAGCGCAGTGGGAAATGGGATTTCTATCAGTTTACCACATCAATCACGT 892
|||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 GATTCT---C---------TGGGAAATGGGATTTCAATCAGTTTACCACATCAATCACGT 759
Query 893 ATTCTTGAAGAGCCTCCTTTGTCAGAATCTCCAAAGATTAGGAATTTTAGGAAGAGCGTG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 ATTCTTGAAGAGCCTCCTTTGTCAGAATCTCCAAAGATTAGGAATTTTAGGAAGAGCGTG 819
Query 953 GC 954
||
Sbjct 820 GC 821
Score = 331 bits (179), Expect = 1e-89
Identities = 228/250 (91%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 80 ATGAAAACGATGAAGTCACCAGCGAAGATCGGAGAGAGTCGGTTCTTAGGAAACATTTCG 139
|||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||
Sbjct 1 ATGAAAACGATGAAGTCACCAGCGAATATCGGAGAGAATCGCTTCTTAGGAAACCTTTCG 60
Query 140 ACTTCTTCTATTCGAAATCTGCTTCCCAGATCCATCTACGCTAAGCAGAAATCGATTCAA 199
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 ACTTCTTCTATCCGAAATCTGCTTCCCAGATCCATCTACGCGAAGCAGAAATCGATCCAA 120
Query 200 AA-TGCAGATACTAAAAAGAGTTTCAGATCCAACGACGAGAACTCTCCTCCTTGTGACCC 258
|| | |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 121 AACT-CAGATACTAA---GAGTTTCAGATCCAACGACGAGAACGCTCCTCCTTGTGATCC 176
Query 259 AAACATACAAACAAATCATCATCTCAACAACGACGACGATCTTCACTTGAAGAAAAAGTC 318
|||||||||||| ||||||||||| |||||| | ||||| |||||||||||||||| ||
Sbjct 177 AAACATACAAACTAATCATCATCTAAACAAC-A--ACGATTTTCACTTGAAGAAAAAATC 233
Query 319 GCCTCAGAAA 328
|||||| |||
Sbjct 234 GCCTCA-AAA 242
> Ahg492139 jgi|Araly1|492139|fgenesh2_kg.7__1572__AT4G26660.1
Length=2593
Score = 211 bits (114), Expect = 2e-53
Identities = 328/425 (77%), Gaps = 40/425 (9%)
Strand=Plus/Plus
Query 378 TTGAAGCGAAGAGTGTACTCGTC-ACAAGAGCTAACTCAATGGCTAATGAGATTACAGAG 436
||||| | | ||||||||| || | |||| | || |||||| ||| ||| |||||||||
Sbjct 352 TTGAATCCAGGAGTGTACT-TTCTAAAAGAACCAATTCAATGCCTAGTGAAATTACAGAG 410
Query 437 G-A-A-GATGATTCATTGGGTCACCAGATTCGTGACCTAAAGGAGGAACTAATAAGAACC 493
| | | || ||| |||||||| |||||||||| || |||||||| ||||| ||||||||
Sbjct 411 GAAGAGGACGATCCATTGGGTGACCAGATTCGAGAACTAAAGGAAGAACTCATAAGAACA 470
Query 494 AAGTCTGATGGGTACAAACCTGATGGAAGCAAGAATGGTTACTTTGTGA-GGGAGAGTTT 552
||||||||||||||||||||||||||||| |||| || |||||| | |||| |||||
Sbjct 471 AAGTCTGATGGGTACAAACCTGATGGAAGTAAGAGCGGACACTTTGC-ACGGGACAGTTT 529
Query 553 GAGTCAATTGAGAAACAGCATCAACAAGTCTTTAGTCATGTCGTGTG-AAAACAGACAAG 611
|||||||||||| ||| |||| ||| |||||| |||||||| || |||| ||| | |
Sbjct 530 AAGTCAATTGAGAGTCAGTATCAGCAAATCTTTACTCATGTCGAGTCCAAAA-AGAGATG 588
Query 612 GTTCAGAAAAGGAAACA-ATGTATGAGGA--G-GAGTA-TGATGATGA---TGTAG-TGG 662
|| ||| ||||| | ||| ||| ||| | || || ||||| ||| ||| | |||
Sbjct 589 AATCTGAAG-GGAAAGAGATGAATGTGGATCGTGA-TAATGATGGTGAAGATGT-GCTGG 645
Query 663 AACTGAGTAAACACATTAACAAGTTTCACACTAACTGTGATTCTGATGATTTGAGGGATT 722
|| ||| |||||| || | ||||| || | | | |||| | || || ||
Sbjct 646 AATTGAATAAACATATCGAGAAGTTGCA-A------G-G-TTCT--T-AT--GA----TT 687
Query 723 CTATTCAATCCTCCTTTGCAAGTGCTTCAGGCTGTGAAGCAGATTCAATGAGTGGAGACG 782
||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| |
Sbjct 688 CTATTCAATCCTCATTTGCAAGTGCTTCAGGCTGTGAAGCAGACTCGATGAGTGAAGATG 747
Query 783 A-GAT 786
| |||
Sbjct 748 ATGAT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99110817490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5