BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55550.3
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495641 jgi|Araly1|495641|fgenesh2_kg.8__1457__AT5G55550.1 2359 0.0
Ahg492141 jgi|Araly1|492141|fgenesh2_kg.7__1574__AT4G26650.1 874 0.0
Ahg887837 jgi|Araly1|887837|Al_scaffold_0231_2 438 5e-122
> Ahg495641 jgi|Araly1|495641|fgenesh2_kg.8__1457__AT5G55550.1
Length=2040
Score = 2359 bits (1277), Expect = 0.0
Identities = 1449/1531 (95%), Gaps = 15/1531 (1%)
Strand=Plus/Plus
Query 1 ATTATAGGATGAACAAAAACATCCTCTGTTTCTCTCTTTTCATATTTTTCTCCACATTTC 60
|||||||||||||| ||||||||||||| || ||||| ||||| |||||||| |||||||
Sbjct 1 ATTATAGGATGAAC-AAAACATCCTCTG-TT-TCTCTATTCATCTTTTTCTCTACATTTC 57
Query 61 CTCATCTGGGTCATCTCCAAAAATGATTTGATGATAACCCAAATTCGCAATTTGATTAGG 120
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 58 CTCATCTGGGTCATCTCCAAAAATGATTTGAAGATCACCCAAATTCGCAATTTGATTAGG 117
Query 121 ---ACAACAACAACAACTTTATTTATCTGATTCCGTCTTTGATTTTCAGACAAGaaaaaa 177
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 118 ACAACAACAACAACAACTTTATTTATCTGATTCCGTCTTAGATTTTCAGACAACAAAAAG 177
Query 178 aaaaaaaaGATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACA 237
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGAAGAAGATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACA 237
Query 238 GACGAAGAAAGGTTAAGAGACTACTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATC 297
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 GATGAAGAAAGGTTAAGAGACTATTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATC 297
Query 298 ATGAGAGATCGTGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCC 357
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 298 ATGAGAGATCGTGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCT 357
Query 358 TGTGTCTCAGAGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCG 417
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 TGTGTCTCAGAGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCC 417
Query 418 AAGAAGGCTGTGCCTCGAGATGATCAGCAGGTGCTAAAGCGACACGCTAGTCCTATCCAC 477
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AAGAAGGCCGTGCCTCGAGATGATCAGCAGGTGCTAAAACGACACGCTAGTCCTATCCAA 477
Query 478 CTTATGTCACCTGTCCAT---GGTGGTGGTGGAAGGACAAAGAAGATCTTCGTTGGAGGT 534
||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 478 CTTATCTCACCTGTCCATGGCGGTGGCGGTGGAAGGACAAAGAAGATCTTTGTTGGAGGT 537
Query 535 TTACCGTCTAGCATTACCGAGGAGGAGTTCAAGAACTACTTTGATCAGTTTGGTACTATT 594
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 538 TTACCGTCTAGCATTACCGAGGAAGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATT 597
Query 595 GCTGATGTTGTTGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATC 654
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTGATGTTGTGGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATC 657
Query 655 ACATTTGATTCAGATGATGCTGTTGATAGAGTTCTTCACAAGACCTTCCATGAGCTCAAT 714
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 658 ACATTTGATTCAGATGATGCTGTTGATAGGGTTCTTCACAAGACCTTTCATGAGCTCAAT 717
Query 715 GGGAAACTAGTTGAGGTCAAAAGAGCTGTACCTAAGGAGATTTCCCCTGTTTCTAATATC 774
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 718 GGGAAACTAGTCGAGGTCAAAAGAGCTGTACCTAAGGAGACTTCCCCTGTTTCTAATAAC 777
Query 775 CGAAGCCCGCTTGCTAGCGGTGTTAACTATGGAGGCGGGTCTAATAGGATGCCTGCTAAT 834
|||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 778 CGAAGCCCGCTTCCTGGCGGTCTTAACTATGGAGGCGGGTCTAATAGGATTTCTGCTAAT 837
Query 835 AGCTACTTTAACAACTTTGCTCCTGGTCCTGGTTTTTATAACAGTCTAGGTCCTGTTGGT 894
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 838 AGCTACTTTAATAACTTTGCTCCTGGTCCTGGTTTTTATAACAATCTAGGCCCTGTTGGT 897
Query 895 CGTCGGTTTAGTCCTGTTATTGGTAGTGGTAGAAATGCGGTTTCTGCTTTTGGCCTCGGT 954
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GGTCGGTTTAGTCCTATTATTGGTAGTGGTAGAAATGCGGTTTCTGCTTTCGGCCTCGGT 957
Query 955 TTGAATCATGACTTGAGTTTGAATTTGAATCCAAGCTGCGATGGGACAAGTTCTACGTTT 1014
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 958 TTGAATCATGAGTTGAGTTTGAATTTGAATCCAAGCTATGATGGGACAAGCTCTACATTT 1017
Query 1015 GGTTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCCGAACCGTTACACC 1074
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1018 GGGTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCTGAACCGTTACACC 1077
Query 1075 TCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACAATTCGAACAATAGAGACTTATGG 1134
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1078 TCTCCAATCGGGCACAATAGAACTGAGTCTCCTTACATTTCGAACAATAGAGACTTATGG 1137
Query 1135 GGAAACAGAACCGACACTGCAGGTCCCGGTTGGAACTTGAATGTCTCGAATGGAAACAAC 1194
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1138 GGAAACAGAACCGAGACTGCAGGTCCCGGTTGGAACTTGAATGTCTCGAATGAAAACAAC 1197
Query 1195 AGAGGAAATTGGGGACTTCCTTCTTCTTCTGCTGTTAGTAATGATAACAATGGCTTTGGA 1254
||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 1198 AGAGGAAATTGGGGACTTCCTTCTTCT---GCTGTTGGTAATGATAACAATGGCCATGGA 1254
Query 1255 AGGAACTATGGGACAAGTTCTGGACTTTCCTCGTCCCCATTTAATGGTTTTGAAGGTTCT 1314
|| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 AGAAACTATAGGACAAGTTCTGGACTTTCCTCGTCCCCATTTAACGGTTTTGAAGGTTCT 1314
Query 1315 ATAGGGGAACTGTACAGAGGCGGCTCAGTCTACAGCGACTCAACGTGGCAGCAACA---G 1371
||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 1315 ATAGGGGAATTGTACAGAGGCAGCTCAGTTTACAGCGACTCAACGTGGCAGCAACAACAG 1374
Query 1372 CAGCTACCATCTCAGTCTTCTCACGAGCTAGACAATTTGTCTCGCGCTTACGGTTATGAT 1431
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1375 CAGCTAGCGTCTCAGTCTTCTCACGAGCTAGACAATTTGTCTCGCTCTTACGGTTATGAT 1434
Query 1432 ATTGACAATGTAGGTTCAGACCCATCTGCAAATGACCCAGAAACTTACAATGGAAGCTAC 1491
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1435 ATTGACAATGTAGGTTCAGACCCATCTGCAAATGACTCAGAAGGTTACAATGGAAGCTAC 1494
Query 1492 AATGTTGGAAATAGACAAACTAATAGAGGTA 1522
|||||||||||||||||||||||||||||||
Sbjct 1495 AATGTTGGAAATAGACAAACTAATAGAGGTA 1525
> Ahg492141 jgi|Araly1|492141|fgenesh2_kg.7__1574__AT4G26650.1
Length=2401
Score = 874 bits (473), Expect = 0.0
Identities = 1096/1381 (79%), Gaps = 106/1381 (8%)
Strand=Plus/Plus
Query 192 ATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGACGAAGAAAG-GT 250
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | |
Sbjct 533 ATCGGATCTGGGGAAGCTCTTCATTGGCGGGATTTCATGGGATACAGATGAAGAACGACT 592
Query 251 -TAAGAGACTACTTTAGCAACTATGGTGATGTT-GTTGAAGCTGTGATCATGAGAGATCG 308
||||| || ||| |||| ||||| ||| || ||||||||||||||||||||||| ||
Sbjct 593 GCAAGAG--TATTTTGGCAAGTATGGAGAT-TTGGTTGAAGCTGTGATCATGAGAGACCG 649
Query 309 TGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCCTGTGTCT-CAG 367
| | || || ||||| |||||||| || || || || |||||||| || | ||| | |||
Sbjct 650 TACTACTGGACGTGCCCGTGGCTTTGGGTTTATCGTTTTTGCAGATCCTTCTGT-TGCAG 708
Query 368 AGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCGAAGAAGGCTG 427
||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 709 AGAGAGTCATCATGGACAAACACATCATTGATGGCCGTACGGTCGAGGCGAAGAAAGCTG 768
Query 428 TGCCTCGAGATGATCAGCAGGTGCTAAAGCGACACGCTAGTCCTATCCACCTTATGTCAC 487
| || || ||||||||||| |||||||| |||||||| ||||| || |||||||| ||||
Sbjct 769 TCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCAATGCACCTTATCTCAC 828
Query 488 CT-GTCCA---TGG---TGGTGGT-G-G-AAGGACAAAGAAGATCTTCGTTGGAGGTTTA 537
|| | ||| ||| ||||||| | | | |||||||||||||||| ||||||||||||
Sbjct 829 CTAG-CCATGGTGGTAATGGTGGTGGTGCACGGACAAAGAAGATCTTTGTTGGAGGTTTA 887
Query 538 CCGTCTAGCATTACCGAGGAGGAGTTCAAGAACTACTTTGATCAGTTTGGTACTATTGCT 597
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 888 CCGTCTAGCATTACTGAGGCCGAGTTCAAGAACTACTTTGATCAGTTTGGTACAATTGCT 947
Query 598 GATGTTGTTGTAATGTATGATCATAACACGCAGAGGCCAAGAGGTTTTGGCTTCATCACA 657
|| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 948 GACGTTGTGGTAATGTATGATCATAATACACAGAGGCCAAGAGGCTTTGGCTTCATCACA 1007
Query 658 TTTGATTCAGATGA-TGCTGTTGATA-GAGTTCTTCACAAGACCTTCCATGAGCTCAATG 715
|||||||| || || | ||||||||| | ||||| ||||||||||| |||||||| || |
Sbjct 1008 TTTGATTCCGAAGAGT-CTGTTGATATG-GTTCTCCACAAGACCTTTCATGAGCTAAACG 1065
Query 716 GGAAACTAGTTGAGGTCAAAAGAGCTGTACCTAAGGAGATTTCCCCTGTTT-CTAATATC 774
| ||| | |||||||| |||||||| || || |||||| | ||| | | | || || |
Sbjct 1066 GAAAAATGGTTGAGGTTAAAAGAGCAGTGCCAAAGGAGCTCTCCTC-GACTACTCCTAAC 1124
Query 775 CGAAGCCCGCTTGCTAGCGGTGT--TAACTA-T--GGAGGCGGGTCTAATAGG--ATGCC 827
|||||||| ||| | | ||| | |||| | | |||| | |||||||| || |
Sbjct 1125 CGAAGCCCTCTTATT-G-GGTATGCTAACAACTACGGAGTAGTCCCTAATAGGTCAT-C- 1180
Query 828 TGCTAATAGCTACTTTAACAACTTTGCTCCTGGTCCTGGTTTTTATAACAGTCTAGG-TC 886
||||||||||||||| || | ||| |||||||| | | | |||| | |||||| ||
Sbjct 1181 TGCTAATAGCTACTTCAATAGTTTTCCTCCTGGT--TA-TAATAATAATAATCTAGGCTC 1237
Query 887 CTGTTGGTCGTCGGTTTAGTCCTGTTATTGGTAGTGGTAGAAATGCGGTT-TCT-GCTTT 944
|| ||| | |||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 1238 -TGCTGG-C--CGGTTTAGTCCT---ATTGGTAGCGGTAGAAATGCT-TTCTCTAGCTTT 1289
Query 945 TGGCCTCGGTTTGAATCATGA-CTTGAGTTTGAATTTGAATCCAAGCTGCGATGGGACAA 1003
||| | ||||||||||| || || | ||||||||| |||||| ||||| | ||
Sbjct 1290 GGGCTT-GGTTTGAATCAAGAACT--A-----AATTTGAATTCAAGCTTTGATGG-A-AA 1339
Query 1004 GTTCTACGTTTGGTTATAACCGTATTCCAAGCAACCCTTACTTCAACGGTGCTTCCCCGA 1063
|| | || ||| ||| ||| || ||| |||||| ||||||||| ||||||| || |
Sbjct 1340 CA-CT-C-TTGGGT-ATAGCCGGATCCCAGGCAACCAGTACTTCAACAGTGCTTCACCAA 1395
Query 1064 ACCGTTACACCTCTCCAATCGGGCACAATAGAA-CTGAGTCTCCTTACAATTCGAACAAT 1122
||||||||| ||||||||| ||| |||||||| | || ||| ||||||| ||| |||
Sbjct 1396 ACCGTTACAACTCTCCAATTGGGTACAATAGAGGC-GACTCTGCTTACAACCCGAGCAAC 1454
Query 1123 AGAGACTTATGGGGAAACAGAACCGACACTGCAGGTCCCGGTTGGAACTTGA-ATGTCTC 1181
|||||||||||||||||||||| || || | |||||||||||||||||| | || ||
Sbjct 1455 AGAGACTTATGGGGAAACAGAAGTGATTCTTCTGGTCCCGGTTGGAACTTGGGA-GTTTC 1513
Query 1182 GAATGGAAACAACAGAGGAAATTGGGGACTTCCTTCTTCTTCTGCTGTTAGTAATGATAA 1241
| ||| || ||||||||||| ||||||||| | ||||| || || || ||||
Sbjct 1514 GGTTGGTAATAACAGAGGAAACTGGGGACTT--T-CTTCTG-TGGTG--AGC---GATAC 1564
Query 1242 CAATGGCTTTGGAAGGAAC-TATGGGACAAGTTCTGGACTTTCCTCG-TCCCCATT-T-- 1296
||||||||||||||| ||| |||||| | ||||||||||||| | | | |||| |
Sbjct 1565 CAATGGCTTTGGAAG-AACCTATGGGGCTGGTTCTGGACTTTC-TGGGTTATCATTCTCG 1622
Query 1297 ---AAT------GGTTTTGAAGGTTCTATAGGGGAACTGTACAGAGGCGGCTCAGTCTAC 1347
|| |||||||| || |||||||||||| |||| |||||| ||||||| ||
Sbjct 1623 GGTAACACAAACGGTTTTGATGGCTCTATAGGGGAATTGTATAGAGGCAGCTCAGTTTAT 1682
Query 1348 AGCGACTCAACGTGGCAGCAA-CAGCAGC-TACCATC-TCAGTCTTCTCACGAGCTAGAC 1404
|||||||||||||||||||| || || | | ||| |||| ||||| | ||| |||||
Sbjct 1683 AGCGACTCAACGTGGCAGCAGTCAAT-GCCT-C-ATCATCAGCCTTCTAATGAGTTAGAC 1739
Query 1405 AATTTGTCTCGCGCTTACGG-TTATGATATTGACAATGTAGGTTCAGACCCATCTGCAAA 1463
||||||||| |||| || || || ||||||||||||||| |||||||||||||| ||
Sbjct 1740 GGCTTGTCTCGCTCTTATGGCTT-TGGTATTGACAATGTAGGCTCAGACCCATCTGCCAA 1798
Query 1464 TGACC-CAGAAACTTACAATGGAAGCTACAATGTTGGAAATAGACAAACTA-ATAGAGGT 1521
|| || ||||| |||| || ||||||||| |||||||||||||| | ||||||||
Sbjct 1799 TG-CCTCAGAAGGTTACCCCCAAAACTACAATGTCGGAAATAGACAAAC-ACATAGAGGT 1856
Query 1522 A 1522
|
Sbjct 1857 A 1857
> Ahg887837 jgi|Araly1|887837|Al_scaffold_0231_2
Length=261
Score = 438 bits (237), Expect = 5e-122
Identities = 253/261 (97%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 187 ATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGACGAAGAA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGATGAAGAA 60
Query 247 AGGTTAAGAGACTACTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATCATGAGAGAT 306
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGTTAAGAGACTATTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATCATGAGAGAT 120
Query 307 CGTGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCCTGTGTCTCA 366
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 CGTGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCTTGTGTCTCA 180
Query 367 GAGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCGAAGAAGGCT 426
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GAGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCCAAGAAGGCC 240
Query 427 GTGCCTCGAGATGATCAGCAG 447
|||||||||||||||||||||
Sbjct 241 GTGCCTCGAGATGATCAGCAG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5