BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55560.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495644 jgi|Araly1|495644|fgenesh2_kg.8__1460__AT5G55560.1 1722 0.0
> Ahg495644 jgi|Araly1|495644|fgenesh2_kg.8__1460__AT5G55560.1
Length=1212
Score = 1722 bits (932), Expect = 0.0
Identities = 1092/1167 (94%), Gaps = 19/1167 (2%)
Strand=Plus/Plus
Query 1 CCGCTTCTTTGGTCTTTAAAACCTTTCCCTAAATCTATCACGCTCCGTTACGTTTTTCTC 60
||| |||||||||||| |||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 1 CCGTTTCTTTGGTCTTCAAAAGCTTTCCCT-AATCTAACACGCTCCGTTACG-TTTTCTC 58
Query 61 CTTTACGAAAATCTCAGCAAAGAATTTTCGATAATTCTCTCCTCCGAT--TCAAGCG--A 116
||||||||||| ||||||||| || | ||| | | | || | | | |
Sbjct 59 CTTTACGAAAAGCTCAGCAAA-AA-CAGCTTTAAAGCGAT--TTAAATGGT-ATGTGTTC 113
Query 117 TTT-TT-AATGATGACTTGTGCGAGCTCCGATGATAATGAGAGTGAAAAGGACAAGGACT 174
||| || || |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 114 TTTCTTCAA-GATGACTTGTGCGAGCTCCGATGACAATGACAGTGAAAAGGACAAGGACT 172
Query 175 CGGAGTCCTTCGTGGAGGTAGATCCGACAGGTAGATACGGTCGGTACGGCGAACTTCTTG 234
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 173 CGGAGTCTTTCGTGGAGGTCGACCCGACTGGTAGATACGGTCGGTACGGCGAACTTCTTG 232
Query 235 GCTCAGGCGCCGTaaaaaaaGTCTACAGAGCCTTTGACCAAGAAGAAGGCATCGAGGTGG 294
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GCTCAGGCGCCGTCAAGAAAGTCTACAGAGCCTTTGACCAAGAAGAAGGCATCGAGGTGG 292
Query 295 CTTGGAACCAAGTCAAACTGAGATGTTTTTCGGATGATCCAGCCATGACCGAGAGGCTTT 354
||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 293 CTTGGAACCAAGTTAAACTGAGATGTTTTTCCGACGATCCAGCCATGACAGAGAGGCTTT 352
Query 355 ACTCGGAGGTCAGGTTGCTTAAGAACCTTAAGAACAGTAACATCATCACCCTGTATAAAG 414
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 353 ACTCGGAGGTCAGGTTGCTTAAGAACCTTAAGAACAGTAACATCATCACCCTCTATAAAG 412
Query 415 TGTGGAGAGACGAGAGAAACAACACCTTGAACTTCATCACCGAGATCTGTACCTCCGGAA 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 413 TGTGGAGAGACGAGAGAAACAACACCTTGAACTTCATCACCGAGATCTGTACCTCCGGGA 472
Query 475 ACCTGAGAGAGTACCGGAAGAAGCACAGACACGTCTCTATGAGGGCTTTGAAGAAGTGGT 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACCTCAGAGAGTACCGGAAGAAGCACAGACACGTCTCTATGAGGGCTTTGAAGAAGTGGT 532
Query 535 CCAAACAGATTCTCAAGGGCTTGGATTATCTCCACACTCACGACCCTTGCATCATCCACA 594
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 533 CCAAACAGATTCTCAAAGGCTTGGACTATCTCCACACTCACGAGCCTTGCATCATCCACA 592
Query 595 GAGACCTCAACTGTAGCAATATCTTCGTCAATGGCAACATCGGCCAGGTCAAGATTGGTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGACCTCAACTGTAGCAATATCTTCGTCAATGGCAACATCGGCCAGGTCAAGATTGGTG 652
Query 655 ATCTAGGTTTAGCTGCAATTGTGGGGAAGAACCATTTAGCTCACTCGATCCTCGGGACAC 714
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 653 ATCTAGGTTTAGCTGCAATTGTGGGGAAGAACCATTTAGCTCACTCCATCCTCGGGACAC 712
Query 715 CAGAGTTCATGGCTCCTGAGCTGTACGAGGAGAACTACACTGAGATGGTTGACATATACT 774
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 713 CAGAGTTCATGGCTCCTGAGCTATACGAGGAGAACTACACTGAGATGGTTGACATTTACT 772
Query 775 CGTATGGAATGTGCGTTTTGGAGCTTGT-GTCACTCGAGATTCCTTATAGCGAATGTGAC 833
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 773 CGTATGGAATGTGCGTTTTGGAGCTTGTCG-CACTCGAGATTCCTTATAGCGAATGTGAT 831
Query 834 AGCGTCGCCAAAATATACAAAAGGGTGAGCAAAGGCCTCAAACCAGAGGCTCTCAACAAA 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 AGCGTCGCCAAAATATACAAAAGGGTGAGCAATGGCCTCAAACCAGAGGCTCTCAACAAA 891
Query 894 GTTAATGATCCAGAAGCTAAGGCATTTATTGAAAAATGCATCGCGCAGCCGAGAGCTAGA 953
|| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 892 GTAAATGATCCTGAAGCTAAGGCATTTATTGAAAAATGCATCGCACAGCCGACAGCTAGA 951
Query 954 CCTTCTGCAGCTGAGCTCCTCTGCGACCCGTTCTTTGATGGGATATTAGATGATGATGAC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CCTTCTGCAGCTGAGCTCCTCTGCGACCCGTTCTTTGATGGGATATTAGATGATGATGAC 1011
Query 1014 GAAGACGGTGAAAACAATGACAACAATGGAGCTGGTCGTATTGTTGTTTCTTGATGAGTG 1073
|||||||| |||||||||||||||| ||||||| ||||||||||| | |||||||| ||
Sbjct 1012 GAAGACGGCGAAAACAATGACAACAGTGGAGCTTGTCGTATTGTT-T--CTTGATGATTG 1068
Query 1074 TATACAATGAACCTTGGTTAATTAGATGTTTGGTTATCAACTGCACGCTCCATTTCTTCC 1133
|||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1069 TATACAATGACCCTTTGTTAATTAGATATTTGGTTATCAAATGCACGCTCCATTTCTTCC 1128
Query 1134 AAGCCTGCAGTTGTTAGTAAAAGTTAT 1160
|||||||||||||||||||||| ||||
Sbjct 1129 AAGCCTGCAGTTGTTAGTAAAATTTAT 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5