BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55570.1
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887434 jgi|Araly1|887434|Al_scaffold_0848_1 538 2e-152
Ahg331885 jgi|Araly1|331885|fgenesh1_pm.C_scaffold_8001228 531 4e-150
> Ahg887434 jgi|Araly1|887434|Al_scaffold_0848_1
Length=375
Score = 538 bits (291), Expect = 2e-152
Identities = 355/384 (92%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 250 GTTAGATCAAGACCACGTCAGATAAAATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGA 309
||| |||||| ||||| ||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1 GTTGGATCAAAACCACTTCAGATAAATTCTACGGCTGGTTTTGTTTCTCCGGGAAGAAGA 60
Query 310 AGAAGCCgcggcggcggcggc-ggcATGATGACGATGAGTAATCGACGG-CTCAAAACGA 367
||||| | || | |||| | ||||||| || ||||||||| || |||| |||||
Sbjct 61 AGAAGAAGAAGC--C-ACGGCTTG-ATGATGA-GA--AGTAATCGA-GGACTCAGAACGA 112
Query 368 CGTCGGCTCTAAGTGAACTAGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT 427
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CGTCGGCTCTAAGTGAACTGGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT 172
Query 428 GGCAGATTATAGTTGGAACCATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT 487
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GGCAGATTATAGTTGGAACTATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT 232
Query 488 TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT 292
Query 548 CTC-GAGACAAAAAGTATTTTCGTTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCA 606
|| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 293 -TCAGAGACAAAAAATATTTTCGTTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCA 351
Query 607 TGGAGAAGATTCTTTACAGGCTGA 630
||||||||||||||||||||||||
Sbjct 352 TGGAGAAGATTCTTTACAGGCTGA 375
> Ahg331885 jgi|Araly1|331885|fgenesh1_pm.C_scaffold_8001228
Length=426
Score = 531 bits (287), Expect = 4e-150
Identities = 379/421 (90%), Gaps = 16/421 (4%)
Strand=Plus/Plus
Query 215 CTTCTTCACTGTGTAGAGTTCCGTCTCTGTGGACCGTTAGATCAAGACCACGTCAGATAA 274
|||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 17 CTTCTTCAATGTGTCGAGTTCCGTCTCTGTGGACAGTTGGATCAAGACCACGTCAGATAA 76
Query 275 AATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGAAGAAGCCgcggcggcggcggcggcA 334
|||| || ||| |||| |||||||||||||||||||||| | || ||||
Sbjct 77 AATCTACCGCTAGTTTTGTTTCTCCGGGAAGAAGAAGAA---------GAAGCAACGGCT 127
Query 335 TGATGACGATGAGTAATCGACGGCT--CAA-AACGA-CGTCGGCTCTAAGTGAACTAGCT 390
|| ||| ||| |||||||||||||| || ||| | | ||||||||||||||||| |||
Sbjct 128 TGTTGATGATAAGTAATCGACGGCTGAGAACAAC-ACCATCGGCTCTAAGTGAACTGGCT 186
Query 391 GACACGGTGGCGGAGACAGGCAAATCGGAGATTACGTGGCAGATTATAGTTGGAACCATT 450
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 187 GACACGGTGGCGGAGACAGGAAAATCAGAGATTACGTGGCAGATTATAGTTGGAACTATT 246
Query 451 GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAG 306
Query 511 AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTCTCGAGACAA-AAAGTATTTTCG 569
||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||
Sbjct 307 AAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTTTAGAGACAACAAA-TATTTTCG 365
Query 570 TTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCATGGAGAAGATTCTTTACAGGCTG 629
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 366 TTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCATGGAGGAGATTCTTTACAGGCTG 425
Query 630 A 630
|
Sbjct 426 A 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5