BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55590.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495646 jgi|Araly1|495646|fgenesh2_kg.8__1462__AT5G55590.1 1862 0.0
> Ahg495646 jgi|Araly1|495646|fgenesh2_kg.8__1462__AT5G55590.1
Length=1299
Score = 1862 bits (1008), Expect = 0.0
Identities = 1197/1281 (93%), Gaps = 41/1281 (3%)
Strand=Plus/Plus
Query 1 ATGAAAGTCGAAGCTTTTATTCCCGCCGTTTTATTGCTCTGTTTTGGGGTAATGTTATGT 60
||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 1 ATGAAAGTCGAAGCTTTTATTCCCGCCGTTTTATTGCTCTGTTTT---G----G--ATGT 51
Query 61 TTAAAAAGCTCGTGTGCGTTGCAGATAGGTAACAATAATGAGTTGAAGAATTACATAAGT 120
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 52 TTAAAAAGCTCGTGTGCGTTGCAGATAGGT---AATAATGATTTGAAGAATTACATAAGC 108
Query 121 TGGGAAGATTTGAGAGTTGTGGAAGATGGAAGAATAGAGAGAAGTTTTAGCATTAAGGAG 180
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 109 TGGGAAGATCTGAGAGTTGTGGAAGATGGAAGAACAGAGAGAAGTTTTAGTATTAAGGAG 168
Query 181 AATAGTAATTGGGTAACCACAAA--C--GCT--AACGCTAACGCGAACGCTACTAACGTG 234
||||||||||||||||||||||| | || || || |||||||||||||| ||||||
Sbjct 169 AATAGTAATTGGGTAACCACAAATGCAAACTCAAAAGCAAACGCGAACGCTACAAACGTG 228
Query 235 AGAAGAGTGATTGTGGTTGATAAAAACGGAGGAGGAGATTCTGTTACAGTTCAAGGAGCT 294
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 229 AGCAGAGTGATTGTGGTTGATAAAAACGGAGGAGGAGACTCTGTTACAGTTCAAGGAGCT 288
Query 295 GTTGATATGGTTCCTGATTCCAATTCACAGAGAGTTAAAATCTTCATTCTTCCTGGGATT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GTTGATATGGTTCCTGATTCCAATTCACAGAGAGTTAAAATCTTCATTCTTCCTGGGATT 348
Query 355 TACAGGGAGAAGGTGATTGTGCCGAAATCAAAACCGTATATTTCGTTCATAGGTAATGAG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TACAGGGAGAAGGTGATTGTGCCGAAATCAAAACCGTATATTTCGTTCATAGGTAATGAG 408
Query 415 AGCTATGCGGGAGATACAGTGATTAGTTGGAGCGATAAAGCTTCAGACCTTGGCT-GCGA 473
|| ||||| |||||||||||||||||||||||||| |||||||||||||| | | ||||
Sbjct 409 AGTTATGCAGGAGATACAGTGATTAGTTGGAGCGACAAAGCTTCAGACCTCGA-TAGCGA 467
Query 474 TGGTAAAGAACTCGGCACTTATAGAACCGCCTCTGTTTCCATTGAATCTGATTTCTTCTG 533
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGGTAGAGAACTCGGTACTTATAGAACCGCCTCTGTTTCCATTGAATCTGATTTCTTCTG 527
Query 534 TGCTACTGCCATCACTTTTGAGAACACGGTGGTTGCAGAGGCAGGG-GAACAGGGGAGGC 592
||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||| ||
Sbjct 528 TGCTACTGCCATCACTTTTGAGAACACGGTGGTGGCAGAGGC-GGGAGAACAAGGGAAGC 586
Query 593 AAGCGGTGGCGTTGAGAATAATTGGGGACAAAGCTGTGTTCTATAGAGTTAGGGTTTTGG 652
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AAGCGGTGGCGTTGAGGATTATTGGGGACAAAGCTGTGTTCTATAGAGTTAGGGTTTTGG 646
Query 653 GATCACAAGACACTCTTTTTGATGACAATGGATCTCACTACTTTTACCAATGCTATATCC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GATCACAAGACACTCTTTTTGATGACAATGGATCTCACTACTTTTACCAATGCTATATCC 706
Query 713 AAGGCAATGTAGATTTCATCTTTGGCAATGCGAAATCACTTTACCAGG-A---C-----T 763
|||| ||||||||||||||||||||||| || |||||||||||||||| | | |
Sbjct 707 AAGGAAATGTAGATTTCATCTTTGGCAACGCCAAATCACTTTACCAGGCAAAACCCGACT 766
Query 764 GTGATATCCACTCAACCGCAAAGAGATATGGCGCGATCGCGGCTCATCATAGAGACTCGG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GTGATATCCACTCAACCGCAAAGAGATATGGCGCGATCGCGGCTCATCATAGAGACTCGG 826
Query 824 AGACTGAAGATACCGGGTTCTCCTTTGTGAACTGTGATATCAGTGGTACTGGGCAGATTT 883
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 827 AGACTGAAGATACCGGGTTCTCGTTTGTGAACTGTGATATCAATGGTACTGGGCAGATTT 886
Query 884 ACTTAGGAAGGGCTTGGGGAAACTACTCAAGAACTGTTTATTCAAACTGTTTCATAGCTG 943
|| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 887 ACCTGGGAAGAGCTTGGGGAAACTACTCGAGAACTGTTTATTCAAACTGTTTCATAGCTG 946
Query 944 ATATTATCACTCCTGTGGGCTGGAGTGACTGGAAACACCCTGAGAGGCAAAGGAAAGTGA 1003
||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||
Sbjct 947 ATATTATCACTCCTGTGGGCTGGAGTGACTGGAAAGATCCTGAGAGGCAAAGCAAGGTGA 1006
Query 1004 TGTTCGGGGAGTACAATTGCAGGGGAAGAGGAGCAGAGAGAGGAGGCCGAGTACCGTGGT 1063
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1007 TGTTTGGGGAGTACAATTGCAGGGGAAGAGGAGCAGAGAGAGGAGGCAGAGTACCGTGGT 1066
Query 1064 CGAAAACTCTTACCAGAGATGAAGTGAAGCCTTTTCTGGGAAGAGAGTTCATATATGGAG 1123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1067 CGAAAACTCTTACCAGAGATGAAGTGAAGCCTTTTCTGGGCAGAGAGTTCATATATGGAG 1126
Query 1124 ATCAATGGCTGAGACTCTAAATCC-TTTTTCAACCGGAC--A--TAAAGGTCCAGCTAGC 1178
|||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||
Sbjct 1127 ATCAATGGCTGAGACTCTAATTCTATTTTT-AACCGGACGGACATAAAGGTCCAGCTAGC 1185
Query 1179 TAACAGGAGATGATGATCTAATTCTACTCTATTCATTTGTAATTAGTTTGAAT-T---TA 1234
||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||
Sbjct 1186 TAACAGGAGATGATGATCTAATTATACTCTATACATTTGTAATTAGTTTGAATCTGAGTA 1245
Query 1235 GAGAGAAATAGAATCTGCATG 1255
|||||||||||||||||||||
Sbjct 1246 GAGAGAAATAGAATCTGCATG 1266
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1270 AAAGTAAATGAAACCCAGGTTTTGGTTTTAGAT 1302
|||||||||||||||||||||||||||||||||
Sbjct 1267 AAAGTAAATGAAACCCAGGTTTTGGTTTTAGAT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5