BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55610.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495650 jgi|Araly1|495650|fgenesh2_kg.8__1466__AT5G55610.1 2025 0.0
> Ahg495650 jgi|Araly1|495650|fgenesh2_kg.8__1466__AT5G55610.1
Length=1285
Score = 2025 bits (1096), Expect = 0.0
Identities = 1228/1291 (95%), Gaps = 12/1291 (1%)
Strand=Plus/Plus
Query 131 AGAGAGATTGATTATTGC-ATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 189
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGATTGATTATT-CGATCGAATCAAGCTTGGTTTGTTAGTAATGGCGGGAATAGCT 59
Query 190 TTAGTTTTAGATCTACTGAAGAAATCTCAATCTAAGAACACTCTCCACTCATCTTCCTTC 249
||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||
Sbjct 60 ATAGTTTTAGATCTACTGAAGAAATCTCAATCCAAGCACAGTCTTCACTCATCTTCCTTC 119
Query 250 TATTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCTCTGCTCCTTTTGCGTCTAGGTTT 309
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 TCTTCCGCCTCCGCCGCCGCTGTTTCTGCTGCCGCCACTGCTCCTTTTGCGTCTAGGTTT 179
Query 310 CTCTTCGGTTCTTTTGAGCCTAGAGTTGCGTATTGTGATGCTGCTGCTGCAATAGATGAT 369
||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 180 CTCTTCGGTTCTTTTGAGCCTCGAGTTGCGTATTGTGATGCCGCTGCTGGAATAGATGAT 239
Query 370 GATTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTCAACCCCTTGCG 429
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 240 GACTACCTTGGTGCTATACGGAAAATGTCTGCGGATGTTTTGCAGCGTGAACCGCTTGCA 299
Query 430 TATATTTCTAGGTCCAAGGAATACAATATCCAGCCAAAACCAGTTCTCTCGGCCTTTGAG 489
||||| ||||| ||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 300 TATATCTCTAGTTCCAAGGAATACAATATCCAGCCGAAACCAATTTTCTCGGCCTTTGAG 359
Query 490 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTTTTGATGTTTTATTTGCCTCTTTTG 549
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TTCAGGGCACTTGCAATGACTACAGTGAGATCCCTCCTGATGTTTTATTTGCCTCTTTTG 419
Query 550 GAGCCTAAAACGGCTTCAGAGGATGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 609
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCCTAAAACGGCTTCTGAGGACGATGATGATTTCCTAAACAATGCTGCAGAAGAAAAC 479
Query 610 CGCCACACAGACTTGATTGTTCCTCTTAAAAAGTCAGCAAAGCAAATTGCCCGTGAGACC 669
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 CGCCGCACAGACTTGATTGTTCCTCTTAAAAAGTCAGCCAAGCAAATTGCCCGTGAGACC 539
Query 670 ACAGTTGTGACCACTCGGAGAGTCCTTGAAAGGCTGGCTCTGAGTTATGTCTCACAGCGT 729
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 540 ACAGTTGTGACCACTCGGAGACTCCTTGAAAGGCTCGCTTTGAGTTATGTCTCACAGCGT 599
Query 730 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGCATGGAAACTTCTAAAGGATGTGCCTCAGTCGGCTTTACGCAAGGCTCAGAGAGGG 659
Query 790 TTGCCGACACATGTATATATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 849
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGCCGACACATGTATACATCTTTAAAGTCAGCCAAACAACTCTTAGAGGTCACTTCCTG 719
Query 850 GGAATCGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATCTACAGATGTGTGTTCCCG 909
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 720 GGAATTGCAGCATCATGGGTAGTTCAAGTAGGCATTGAAATATACAGATGTGTGTTCTCG 779
Query 910 AATGTTAAACCCGAGGAAGAAGAAGAAGAGGAGAAAGTCGAGATATCACAGCAAGCTAAG 969
|||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct 780 AATGTTAAACCCGAGGAAGAAGAAGAGGA--ACAA-GTCGAGATATCACAGCAAGCTAAG 836
Query 970 GATCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCGTCCTTAGTATTTGCT 1029
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 837 GACCTCGGAAACAAAGTTGTGGGTATCACAGTACGATGTGGCGCTTCCTTAGTGTTTGCT 896
Query 1030 GCCATTGGAGCCGGGATATGTTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATCGGT 1089
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 897 GCCATTGGAGCCGGTATATGCTCTTGCCTTATCCGTCCCTCCACGGGCCAATGGATTGGC 956
Query 1090 TGCGCGCTGGGAGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1149
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGCGCGCTGGGGGACTTGGCTGGTCCGATGGTTGTTTCGGTTTGCCTGCAGAAGACTCTT 1016
Query 1150 CAAGCTGATTATTAAGTTCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1209
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAAGCTGATTATTAAGTCCTTGTGTGGAAATTGAATTCTTCTACTTGAATCTTGATGATC 1076
Query 1210 CAAATGAAATCATAGAGCTTGTTTTTTGTTTCTGAAATTT-CTTATTGTCTTCACTGAA- 1267
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1077 CAAATGAAATCATAGAGCTTGTTTTTTTTTTCTGAAATTTTCTTATTGTCTTCACTGAAA 1136
Query 1268 CCTTAAAAACAATGATCAATAGATTTCTCAAAATGTACCTACTTTTGACAACAGCACAAT 1327
||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1137 CCTTAAAAACATTGATCAATAGACTTCTCAACATGTACCTACTTTTGACAACAGCACAAT 1196
Query 1328 AAGTCAGGTatttattttc-ctcggattttagttttgtatctgcgatttttct-tctctt 1385
||||||||||||||||||| || |||||| ||||||| ||||| |||||||| ||||||
Sbjct 1197 AAGTCAGGTATTTATTTTCACT-GGATTT-AGTTTTGGATCTGAGATTTTTCCCTCTCTT 1254
Query 1386 ttt-acttttgtaagtagggattttGTGAAC 1415
||| ||||||||||||| |||||||||||||
Sbjct 1255 TTTTACTTTTGTAAGTATGGATTTTGTGAAC 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5