BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55620.1

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950218 jgi|Araly1|950218|scaffold_802105.1                        542    2e-153


> Ahg950218 jgi|Araly1|950218|scaffold_802105.1
Length=347

 Score =  542 bits (293),  Expect = 2e-153
 Identities = 332/350 (95%), Gaps = 5/350 (1%)
 Strand=Plus/Plus

Query  152  TCTTAAAATC-AACCAAGACAATGGAAATGAAATTGCTCTTTA-CATCGGCTTTCACCCA  209
            |||| ||||| |||||||||||||||||||||||||||||||| || ||||||| || ||
Sbjct  1    TCTTGAAATCAAACCAAGACAATGGAAATGAAATTGCTCTTTACCA-CGGCTTTTACTCA  59

Query  210  AATGTTCGGCTACTCGAACCATATGGATCAAGCCAGCAACTGCCAAAGCACCCGCAACAA  269
            ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  60   AATGTTCGGCTACTCGAACCACATGGATCAAACCAGCAACTGCCAAAGCACCCGCAACAA  119

Query  270  AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTCCCTCTTCACTA  329
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  120  AATTATAAAGATGATGAAGAAAGAAGAATTCCCAAGTGGATTCCAAGTTCCTCTTCACTA  179

Query  330  CCCTAAATACTCCAAGTCTGATTACGAAGTTATGGATGATCTCCGCCTTGACTTGCTCCT  389
            |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||
Sbjct  180  CCCTAAATACTCCAAGTCTGATTACGAAGCCATGAATGATCTCCGCCTTGACTTGCTCCT  239

Query  390  CAAACAATATGGATTCTCCTTTGAAGGATCTCTTGAAGACAAGAGGGTTTTTGCAATTGA  449
            |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct  240  CAAACAATATGGATTCTCATTCGAAGGATCTCTTGAAGACAAAAGGGTTTTTGCAATTGA  299

Query  450  ATCATTTCTCTGGCCTGATCAGCTTTAGATGGTCTATGTTGGTGTTGAAT  499
            ||||||||||||||||||||||||||||  ||| ||||||||||||||||
Sbjct  300  ATCATTTCTCTGGCCTGATCAGCTTTAG--GGTTTATGTTGGTGTTGAAT  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27181639821


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5