BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55630.1
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495651 jgi|Araly1|495651|fgenesh2_kg.8__1467__AT5G55630.2 1816 0.0
> Ahg495651 jgi|Araly1|495651|fgenesh2_kg.8__1467__AT5G55630.2
Length=1201
Score = 1816 bits (983), Expect = 0.0
Identities = 1134/1207 (94%), Gaps = 9/1207 (1%)
Strand=Plus/Plus
Query 319 ATGTCGAGTGATGCAGCTCGTACGCCATTGTTACCCACTGAGAAGATAGATACCATGGCT 378
||||| || ||| | |||||||| ||||||||||| || |||||| ||||| ||||||||
Sbjct 1 ATGTCAAGCGATTCTGCTCGTACACCATTGTTACCTACCGAGAAGTTAGATCCCATGGCT 60
Query 379 CAAGATTTCAACCTGAACTCAAGAACTTCTTCTTCAAGAAAACGAAGATTGCGTCGCTCT 438
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 61 CAAGATTTCAACCTAAACTCAAGAA---CTTCTTCAAGAAAAAGAAGATTGCGTCGCTCT 117
Query 439 AGAAGTGCTCCTCGTGGTGATTGTATGTACAATGATGATGTCAAAATCGACGAACCACCT 498
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 118 AGAAGCGCTCCTCGTGGTGATTGTATGTACAATGATGATGTCAAAATCGATGAACCGCCT 177
Query 499 CCTCATCCGAGTAAAATCCCAATGTTCAGTGATCTAAACCCGAATCTCAGGCGAGTGATC 558
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 178 CCTCATCCTAGTAAAATCCCAATGTTTAGTGATCTAAACCCGAATCTCAGGCAAGTGATC 237
Query 559 ATGTTCTTGGCTTTATATCTTA-CCATTGGTACGCTCTGTTTCTACCTCGTGAGAGACCA 617
||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 238 ATGCTCTTGGCTTTATATC-TAGCCATTGGTACTCTCTGTTTCTACCTCGTGAGAGACCA 296
Query 618 GATCTCCGGTCATAAAACCAGTGGTGTGGTAGATGCTCTCTATTTCTGTATAGTAACGAT 677
||||||||||||||| |||| || |||| |||||||| ||||||||||||||||||||||
Sbjct 297 GATCTCCGGTCATAAGACCAATGCTGTGTTAGATGCTGTCTATTTCTGTATAGTAACGAT 356
Query 678 GACAACTGTTGGATACGGTGACCTTGTCCCTAATAGTTCCGCCTCAAGGCTACTTGCTTG 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GACAACTGTTGGATACGGTGACCTTGTCCCTAATAGTTCCGCCTCAAGGCTACTTGCTTG 416
Query 738 TGCCTTCGTCTTCTCGGGAATGGTCCTCGTTGGTCACCTCTTAAGTCGAGCGGCGGATTA 797
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 417 TGCCTTTGTCTTCTCGGGAATGGTCCTCGTTGGTCACCTTTTAAGTCGAGCAGCGGATTA 476
Query 798 TCTAGTGGAGAAACAAGAGGCTTTGCTCGTTAGGGCTTTCCATTTGCGTCAAAGCTTTGG 857
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCTGGTGGAGAAGCAAGAGACTTTGCTCGTTAGGGCTTTCCATTTGCGTCAAAGCTTTGG 536
Query 858 TCCAACAGACATTCTCAAGGAGTTGCATACTAACAAGTTGAGATACAAATGCTATGCTAC 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 TCCAACAGACATTCTCAAGGAGTTGCATACTAACAAGTTGAGATACAAATGCTATGCCAC 596
Query 918 ATGCCTTGTCCTTGTAGTCCTCTTCATTGTTGGCACGATTTTCCTTGTAATGGTTGAGAA 977
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 597 ATGCCTTGTCCTGGTAGTCCTCTTCCTTGTTGGTACGATTTTCCTTGTAATGGTTGAGAA 656
Query 978 AATGCCGGTTATCTCAGCTTTCTACTGCGTCTGCTCCACGGTTACAACATTGGGTTATGG 1037
||||||||||||| ||||||||||||||| || |||||||| || ||||||||||||||
Sbjct 657 AATGCCGGTTATCGAAGCTTTCTACTGCGTATGTTCCACGGTAACGACATTGGGTTATGG 716
Query 1038 AGATAAGAGCTTTAACTCGG-AAGCCGGACGCCTTTTTGCTGTGTTTTGGATCTTGACGA 1096
||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 717 TGATCAGAGCTTTAACTCGGGAA-CAGGACGCCTTTTTGCTGTGTTTTGGATCTTGACGA 775
Query 1097 GCAGCATATGTTTGGCTCAGTTTTTCCTTTATGTAGCTGAGCTAAATACAGAAAACAAAC 1156
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 776 GCACCATTTGTTTGGCTCAGTTTTTCCTCTATGTAGCTGAGCTAAATACGGAAAACAAAC 835
Query 1157 AGAGGGCGTTGGTGAAATGGGTTTTAACGCGAAGAATCACAAACAATGATCTCGAAGCAG 1216
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 AGAGGGCGTTAGTGAAATGGGTTTTAACGCGAAGAATCACAAACAATGATCTCGAAGCCG 895
Query 1217 CTGATCTCGATGAAGATGGAGTTGTTGGAGCTGCAGAGTTTATTGTGTATAAACTGAAAG 1276
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 896 CTGATCTTGATGAAGATGGAGTCGTTGGAGCTGCAGAGTTTATTGTATATAAACTGAAAG 955
Query 1277 AAATGGGTAAGATTGATGAGAAAGATATTTCTGGGATAATGGATGAGTTCGAGCAACTTG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAATGGGTAAGATTGATGAGAAAGATATTTCTGGGATAATGGATGAGTTCGAGCAACTTG 1015
Query 1337 ATTACGATGAATCAGGAACTCTCACGACTTCTGACATCGTTTTAGCTCAGACCACGTCTC 1396
||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||
Sbjct 1016 ATTACGATGAATCGGGAACTCTCACGACATCTGACATCGTTCTAGCTCAGACAACGTCTC 1075
Query 1397 AGATTCAAAGGTAAGCCtcatcatcatcatcatcTTGCGAAGACGAATCAGAATCTTTGT 1456
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1076 AGATTCAAAGGTAAGCCTCATTGTCATCATCATCTTGCGAAGATGAATCAGAATCTTTGT 1135
Query 1457 TTAGTTATACCTTCACACAACAAAAA-GCCGAAGAGAGTGAACAgtttttcgaaattttg 1515
| |||||||||| ||||||||||||| || |||||| |||||||||||| |||||||||
Sbjct 1136 TAAGTTATACCTGCACACAACAAAAAAGCA-AAGAGATTGAACAGTTTTTGGAAATTTTG 1194
Query 1516 tttgttt 1522
|||||||
Sbjct 1195 TTTGTTT 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5