BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55640.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495652 jgi|Araly1|495652|fgenesh2_kg.8__1468__AT5G55640.1         571    2e-162


> Ahg495652 jgi|Araly1|495652|fgenesh2_kg.8__1468__AT5G55640.1
Length=569

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 423/474 (89%), Gaps = 23/474 (5%)
 Strand=Plus/Plus

Query  175  TCCATGAACGTTAGTCTTCAATGGATACATCTGTAATGCAGACGAATCTTCCCAAGGTAG  234
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  117  TCCATGAACGTTAGTCTTCAATGGATACTTCTGTAATACAGACGAATCTTCCCAAGGTAG  176

Query  235  AAGACAATGATGAATGGGACACTGATGGGTTTGTGATTCCGAGCTTGGAGATTGAAGAAG  294
            ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  177  AAGACGATGATGAGTGGGACACTGATGGGTTTGTGATTCCAAGCTTGGAGATTGGAGAAG  236

Query  295  ACAAGGTTAATAATAATAATGATTCAGAAGTTGAAACATCAAAACCTTCTTCTCCTAAGA  354
            |||| ||||||||| ||  |  ||  ||||||||||||||||||         |||||||
Sbjct  237  ACAATGTTAATAATGAT--T--TT--GAAGTTGAAACATCAAAA---------CCTAAGA  281

Query  355  GTAAAGCTGAAGAAAACATCTACTTAGGACCACATGGAGCTCCTCCTTCGCAGCTACAAG  414
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  282  TTAAAGCTGAAGAAAACATCTACTTAGGACCACATGGAGCTCCTCCCTCGCAGCTACAAG  341

Query  415  ATGGTGGTAGTAACACATCGAGCCGCAAGCAGCGGTTTAAGCAGATGCTCAAGGAAGCAG  474
            |||||  ||  || ||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct  342  ATGGTAATA--AA-ACATCTAGCCGCAAGCAGCGGTTTAAGCAGAAGCTCAAGGAAGCTG  398

Query  475  ATCAGAAAATGAGCGGCTCTGGTCGAGAAAACAAAATGGCTAACTTAAGAGAGCTTGTAG  534
            | |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct  399  ACCAGAAAATGAGCGGCTCTGGTCGAGAGAACAAAATGGCCAACTTAAGAGAGCTTGTAG  458

Query  535  GCGGGGGTGCAGGTGCAGAGAAAGGAACTAATA-TGGGAAAAGGTGTTTCAAGAGACTGG  593
            || | ||  | || ||||||  | ||||||| | ||| ||||||||||||||||||||||
Sbjct  459  GCAGCGG--C-GGCGCAGAGGGACGAACTAAAACTGG-AAAAGGTGTTTCAAGAGACTGG  514

Query  594  CTTGACCCTCATTGCCATGAATCTCAGTTCGAGAAACGACGACTTCCATAACGC  647
            |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  515  CTTGACCCACATTGCCACGAATCTCAGTTCGAGAAACGACGACTTCCCTAACGC  568


 Score =  189 bits (102),  Expect = 2e-47
 Identities = 113/118 (96%), Gaps = 2/118 (2%)
 Strand=Plus/Plus

Query  24   CCTTTTCCCAAGCTCTAACATTTAGGGTTTCGCGAAAAATCAATCAGGTGAAAAATAATC  83
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CCTTTTTCCAAGCTCTAACATTTAGGGTTTCGCGAAAAATCAATCAGGTGAAAAATAATC  60

Query  84   GAATTATTGTA-AAATTGATACATAAATTCACATTCAAAAGCCAAAGAGCTGAGAAAT  140
            |||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  61   GAATTATT-TCGAAATTGATACATAAATTCACATTCAAAAGTCAAAGAGCTGAGAAAT  117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5