BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55650.1

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950221 jgi|Araly1|950221|scaffold_802108.1                        628    8e-180


> Ahg950221 jgi|Araly1|950221|scaffold_802108.1
Length=508

 Score =  628 bits (340),  Expect = 8e-180
 Identities = 432/474 (91%), Gaps = 15/474 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGGAAAAATC---TGATGATGAAAAGCATTTTACTCGGTGTTGCTTTCTTTCACAG  57
            ||||||||||||||   ||||||||||||||||||| || ||||||||||||||| ||||
Sbjct  21   ATGGTGGAAAAATCTGATGATGATGAAAAGCATTTTTCTTGGTGTTGCTTTCTTTTACAG  80

Query  58   CTGTCACTGCTGTTTTTTCTTGTAACCCTAATTTCATCTGTAGCTTTCCTCTGTTTCTTG  117
             ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  81   ATGTCATTGCTGTTTTTTCTTGTAACCCTAATTTCAGCTGTAGCTTTCCTCTCTTTCTTG  140

Query  118  AACTCTCAAGGAGTCTCCTCTCTCAC-AATAACCATGGCAATCTTGTTCGTCTCCTCTTC  176
            |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||| ||||
Sbjct  141  AACTCTCATGGAGTCTCCTCTCTC-CTAATAACCATGGCAATCTTGTTCTTCTCCACTTC  199

Query  177  TGTTTTCTTGT-TACGAATCTTCAAGGAA-AAGACAAGACTATGTTTGGCTGAGGGGTCC  234
            ||||||||| | || || |||| || ||| ||||||| |||||||||||||||| | |||
Sbjct  200  TGTTTTCTT-TCTAAGATTCTTTAA-GAAGAAGACAAAACTATGTTTGGCTGAGAGATCC  257

Query  235  CAAGGAGAAGGCTACGATTATGAAgatgatgatgatgatgatgGTCTCATTGAGATTGAT  294
            |||| |||||||  | || |||| ||||| |||||||| ||||||||||||||||||| |
Sbjct  258  CAAGAAGAAGGC--C-ATGATGATGATGAGGATGATGAAGATGGTCTCATTGAGATTGCT  314

Query  295  CTTGTGA--G-CGAAGAAGCAGAGACTATAGAGGCAATGAGAAACATTAATCAAAGTCGA  351
            |||||||  |  ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  315  CTTGTGAGTGAAGAAGAAGCAGAGACTATAGAGGCAATGAGAAACATTAATGAAAGTCGA  374

Query  352  CTGAGAATTAGGATTGAAGAAGAACAAGAAGAAGATATTGATGATGTGAATATGGAAGAA  411
            | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  375  CAGAGAATTAGGATTGAAGAAGAACAAGAAGAAGAGATTGATGATGTGAATATGGAAGAA  434

Query  412  GATAATCTTATTGAGATTGATATTTCCATTGGATCCATTAAAAGACGAATGTAA  465
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  435  GATAATCTTATTGAGATTGATATTTCCATTGGATCTATTAAAAGACGAATGTAA  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16826614749


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5