BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55660.1
Length=2830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495653 jgi|Araly1|495653|fgenesh2_kg.8__1469__AT5G55660.1 3611 0.0
> Ahg495653 jgi|Araly1|495653|fgenesh2_kg.8__1469__AT5G55660.1
Length=2798
Score = 3611 bits (1955), Expect = 0.0
Identities = 2591/2871 (90%), Gaps = 152/2871 (5%)
Strand=Plus/Plus
Query 1 GAAAGAGATCGGAGCGTTGGTATCCCTTTTTTCTTCTCTGATTCGAACAGAATAAATAAG 60
|||||||||||||||||||||| || ||| | |||||||||||| |||||||||||
Sbjct 1 GAAAGAGATCGGAGCGTTGGTA----TTATTT-GT-TCTGATTCGAACGGAATAAATAAG 54
Query 61 AACCCCaaaaaaaaaaaaaGCTCACTGCTTTGAAGCCTTTGGATAGCGAAGCGTTCTGGT 120
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 55 AACCCC-AAAAAAAAAAAAGCTCAGTGCTTTGAAGCCTTTGGATAGCGAAGCGTTCTGGT 113
Query 121 GTTTTCTGGCTTTAAGATCTACTGAACATTGGGTGTGAGCAATGGGGGAAGAAGATACAA 180
||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 114 GTTTT-TGGCTTTAAGATCTACTGAACACT-GG-GTGAGCAATGGGGGAAGAAGATACAA 170
Query 181 AAGTCATTGTGGAGCCAACGGCAAATGGGACTAGCTCTCTTCAAAAGACATCAGATGCAA 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 171 AAGTCACTGTGGAGCCAACGGCAAATGGGACTAGCTCTCTTCAAAAGACATCAGATGCTA 230
Query 241 TCAGTGGAAAGGAAGTGCAGGAGAATGCTAGTGGCAAGGAAGTGCAGGAGAGTAAGAAAG 300
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 231 TCAGTGGAAAGGAAGTGCTGGAGAATGCTAGTGGCAAGGAAACACAGGAAAGTAAGAAAG 290
Query 301 AAGAGGATACTGGA-CTCGAGAAAATGGAGATAGATGATGAGGGTAAGCAACATGAAGGA 359
| |||||||||||| || |||||||||||||||||||||||| |||||||||| |||||
Sbjct 291 ACGAGGATACTGGACCT-GAGAAAATGGAGATAGATGATGAGAGTAAGCAACACCAAGGA 349
Query 360 GAAAGTGAGACAGGAGATAAAGAGGTGGAGGTTACAG---AAG--AAGAA--AAG-A--A 409
|||||||||| ||||||||||||| ||||||||||| ||| ||||| ||| | |
Sbjct 350 AAAAGTGAGACGGGAGATAAAGAGGCGGAGGTTACAGAAAAAGATAAGAAGGAAGAAGCA 409
Query 410 -AGA-TG------TCGGTGAAGACAAGGAACAACCAGAAGCTGATAAAATGGATGAAGAC 461
||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GAGACTGCTAAAATAGACGAAGACAAGGAACAACCAGAAGCTGATAAAATGGATGAAGAC 469
Query 462 ACAGATGACAAGAACTTGAAAGCTGATGATGGTGTTTCTGGCGTTGCTACTGAGGAAGAT 521
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 470 ACAGATGACAAGAACTTGAAAGCTGATGATGGTGTTTCTGGCGGTGCTACTGAGGTAGAT 529
Query 522 GCTGTAATGAAGGAAAGTGTGGAGTCTGCTGACAATAAAGA--T-----GC-C-GAAAAT 572
|||||||| | |||| |||||||||| ||||||| ||||| | || | ||||||
Sbjct 530 ACTGTAATGGATGAAAATGTGGAGTCTACTGACAAGAAAGATGTAAAAGGCGCTGAAAAT 589
Query 573 CCAGAA-G-G----AGAG-CAA--GAGAAAGAATCAAAGGAGGAGAAACTGGAAGGAGGG 623
|||||| | | |||| || |||||||||||||||||||||||||| |||||||||
Sbjct 590 CCAGAAGGAGACCAAGAGAAAACCGAGAAAGAATCAAAGGAGGAGAAACTAGAAGGAGGG 649
Query 624 AAAGCAAATGGAAAC---GAA--G---AAGG--G-GAT---A-CGGAAGAGAAGTTGGTT 668
|||| |||||||||| ||| | |||| | ||| | |||||||||||||||
Sbjct 650 AAAGTAAATGGAAACGAAGAAGGGAATAAGGAAGAGATCAAAGAGGAAGAGAAGTTGGTC 709
Query 669 GGTGGAGACAAAGGGGACGATGTTGATGAGGCTGAAAAGGTAGAGAATGTGGATG-AAGA 727
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 710 GGTGGAGACAAAGGGGGCGATGTTGATGAGGATGAAAAGGTGGAGAATGTGGATGAAAG- 768
Query 728 TGACAAAGAAGAGGCACTGAAGGAGAA-GAATGAGGCCGAACTGGCTGAAGAGGAGGAAA 786
||||||||||||||||| |||||| || |||||||| |||||| |||||||||| ||
Sbjct 769 TGACAAAGAAGAGGCACCGAAGGA-AAGGAATGAGGGCGAACTAGCTGAAGAGG-GG--- 823
Query 787 CAAATAAAGGAGAGGAAGTGAAGGAAGCAAACAAAGAAGATGATGTGGAGGCAGACACTA 846
|| ||||| || | | || | ||||||| ||| || |||||||||||||||
Sbjct 824 ------AA--AGAGG-AG-G-A--AA-CTAACAAAGGAGAGGAAGTGGAGGCAGACACTG 869
Query 847 AGGTCGCTGAGCCAGAAGTGGAAGACaaaaaaacggagagtaaggacgagaatgaagata 906
|||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 870 AGGTCGATGAGCCAAAAGTGGAAGACAAAAAAACAGAGAGTAAGGACGAGAATGAAAAT- 928
Query 907 aagaagaaga-ga-aggaa-gatgagaaagaagag--agtatggatgataaggaagatga 961
|| | || | || || || |||||||| |||||| || | ||| || |||||||||||
Sbjct 929 GAG-ATAA-ATGACAGCAAGGATGAGAATGAAGAGAAAG-A-GGAAGAGAAGGAAGATGA 984
Query 962 -aaaggaagagagcaatgatgatgataaggaagatgaaaaagaagagagcaatgatgata 1020
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GAAA-GAAGAGAG-TATG--GATGATAAGGAAGATGAAAAAGAAGAGAGCAATGATGATA 1040
Query 1021 aggaagacaaaaaagaagatatcaagaagTCTAACAAGCGAGGGAAAGGGAAGACTGAGA 1080
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1041 AGGAAGACAAAAAAGAAGAGATCAAGAAGTCTAACAAGCGAGGGAAAAGGAAGACTGAGA 1100
Query 1081 AGACTCGCGGGAAGACAAAGAGTGATGAAGAAAAGAAGGATATAGAACCTAAGACTCCTT 1140
|| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1101 AGGCTCGCGGGAAGATGAAGAGTGAGGAAGAAAAGAAGGATATAGAACCTAGGACTCC-- 1158
Query 1141 TTTTCTCTGATCGCCCTGTCCGTGAGCGAAAGTCTGTTGAAAGGCTTGTTGCGGTGGTTG 1200
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1159 -TTTCTCTGATCGCCCTGTCCGTGAGCGGAAGTCTGTTGAAAGGCTTGTTGCGGTGGTTG 1217
Query 1201 ATAAAGATTCTTCAAGGGAATTCCATGTTGAAAAGGGAAAAGGGACACCTCTCAAAGATA 1260
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATAAAGATTCTTCAAAGGAATTCCATGTTGAAAAGGGAAAAGGGACACCTCTCAAAGATA 1277
Query 1261 TTCCCAATGTTGCTTACAAGGTATCAAGGAAGAAGTCTGATGAAGTTTTCAAGCAGTTAC 1320
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TTCCCAATGTTGCTTACAGGGTATCAAGGAAGAAGTCTGATGAAGTTTTCAAGCAGTTAC 1337
Query 1321 AC-ACAATTCTATTCGGTGGGAAGAGAGTAAAAGCTACTCAGCTCAAGGCACACATATTA 1379
|| | |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 1338 ACTTC-ATTCTATTCGGTGGGAGGAGAGGAAAAGCTACTCAGCTCAAGGCAAACATATTA 1396
Query 1380 CGCTTTTCTGGTTACAAATGGCAAGGAGATGAGgaaaaggcaaaattgaaagtcaaagaa 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1397 CGCTTTTCTGGTTACAAATGGCAAGGAGATGAGGAAAAGGCAAAATTGAAAGTGAAAGAA 1456
Query 1440 aagtttgagaaaatcaacaaagaaaaaTTGCTGGAGTTTTGCGATTTATTTGACATATCA 1499
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1457 AAGATTGAGAAAATCAACAAAGAAAAATTGCTGGAGTTTTGCGATCTATTTGACATATCA 1516
Query 1500 GTTGCTAAGGCTACCACAAAGAAGGAAGATATTGTGACAAAGCTGGTTGAGTTTTTGGAG 1559
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1517 GTTGCTAAGACTACCACAAAGAAGGAAGATATTGTCACAAAGCTGGTTGAGTTTTTGGAG 1576
Query 1560 AAACCTCATGCAACAACTGATGTTCTAGTCAATGAGAAAGAGAAGGGAGTGAAGCGCAAA 1619
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 1577 AAACCTCATGCAACAACTGA-----T-GTCAATGAGAAAGAGAAGGGAGCGAAGCGCAAA 1630
Query 1620 AGAACTCCTAAGAAAAGTTCACCTGCAGCTGGAAGTTCATCTTCAAAACGATCAGCAAAG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 AGAACTCCTAAGAAAAGTTCACCTGCAGCTGGAAGTTCATCTTCAAAACGATCAGCAAAG 1690
Query 1680 AGCCaaaaaaaGACCGAGGAAGCAACAAGGACTAACAAAAAGAGTGTAGCTCATTCTGAT 1739
||||||||||||||||||||||| ||||||||||| ||| |||| || |||||||||||
Sbjct 1691 AGCCAAAAAAAGACCGAGGAAGCGACAAGGACTAA-AAA--GAGTTTACCTCATTCTGAT 1747
Query 1740 GATGAGTCTgaggaagagaaagaggacgacgaagaagaagagaaagagcaggaggttgag 1799
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1748 GATGAGTCTGAAGAAGAGAAAGAGGACGATGAAGAAGAAGAGAAAGAGCAGGAGGTAGAG 1807
Query 1800 gaggaagaggaggagaaTGAAAATGGGATTCCTGATAAATCTGAGGACGAGGCTCCTCAG 1859
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1808 GAGGAAGAGGAGGAAAATGAAAATGGGATCCCTGATAAATCTGAGGACGAGGCGCCTCAG 1867
Query 1860 CTTTCTGAAAGTGAGGAGAATGTTGAATCCGAGGAGGAGTCAGAGGAAGAAACTAAAAAG 1919
| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1868 CCTTCTGAAAGTGAGGAGAAAGTTGAATCTGAGGAGGAGTCAGAGGAAGAAACTAAAAAG 1927
Query 1920 AAGAAACGTGGTTCTAGGACATCATCTG-ATAAGAAAGAATCAGCAGGGAAATCCAGAAG 1978
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1928 AAGAAACGTGGTTCTAGGACATCATCTGGA-AAGAAAGAATCAGCAGGGAAATCCAGAAG 1986
Query 1979 CAAGAAAACTGCAGTCCCTACGAAATCCAGTCCACCAAAGAAAGCTACTCAAAAGCGCTC 2038
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 CAAGAAAACTGCAGTCTCTACGAAATCCAGTCCACCAAAGAAAGCTACTCAAAAGCGCTC 2046
Query 2039 AGCAGGTAAACGGAAGAAGAGTGATGACGACAGTGATACAAGTCCAAAGGCATCTTCTAA 2098
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2047 AGCAGGTAAGCGGAAGAAGAGTGATGACGACAGTGATACAAGTCCAAAGGCATCCTCTAA 2106
Query 2099 GAGGAAGAAGACTGAAAAACCGGCCAAGGAGCAGGCCGCAGCCCCTTTAAAATCTGTATC 2158
|||||||||||||||||||||||||||||||||| || || |||| ||||||||||||
Sbjct 2107 GAGGAAGAAGACTGAAAAACCGGCCAAGGAGCAGCCCTTGGCTCCTTCAAAATCTGTATC 2166
Query 2159 AAAAGAAAAGCCAGTAATAGGAAAGAGAGGCGGAAAAGGGAAAGACAAAAACAAGGAGCC 2218
|||||| ||||||| || | || ||| | |||||||||||||||||||| ||| |||||
Sbjct 2167 AAAAGAGAAGCCAGGAA-A--AA-GAG-G-CGGAAAAGGGAAAGACAAAACCAAAGAGCC 2220
Query 2219 TAGCGATGAAGAATTGAAAACTGCAATTATTGATATCTTGAAAGGGGTGGACTTCAACAC 2278
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TAGTGATGAAGAATTGAAAACTGCAATTATTGATATCTTGAAAGGGGTGGACTTCAACAC 2280
Query 2279 GGCCACTTTCACTGACATCCTCAAGCGACTAGATGCTAAGTTCAACATCAGTCTCGCCTC 2338
|||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2281 GGCCACATTCACTGACATCCTCAAGCGACTAGATGATAAGTTCAAAATCAGTCTCGCCTC 2340
Query 2339 aaaaaaaTCATCTATAAAGCGGATGATCCAAGATGAGCTAACTAAGCTAGCagatgaagc 2398
|||||| |||||||| |||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 2341 AAAAAAGTCATCTATTAAGCTGATGATCCAAGATGAACTCACTAAGCTAGCAGATGAAGC 2400
Query 2399 cgaggatgaggaaggagaagaagaggatgctgagcatgaggaagaagaagagaaagagaa 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 CGAGGATGAGGAAGGAGAAGAAGAGGATGCTGAGCATGAGGAAGAAGAAGAGAAAGAGAA 2460
Query 2459 agctaaag--g-a---TCGGGTGGTGGAGAGGAGGTTAAAGCTTAATCACAAAGGACATG 2512
|| |||| | | || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2461 AGAGAAAGCTGGAGAATCTGGTGGTGGAGAGGAGGTTAAAGCTTAATCACAAAGCACATA 2520
Query 2513 AATCTAGTTGACTTACTAGCTAATCGTCAAGGG-TGC-CTCCTCGATTGCCTAGCCT--T 2568
|||||||| ||| | |||| ||||| | ||||| | | ||||||||||||||||||| |
Sbjct 2521 AATCTAGTCGACCTGCTAGTTAATCTTGAAGGGGT-CTCTCCTCGATTGCCTAGCCTCCT 2579
Query 2569 G-GTCATTAGGCAAATATATCAGAGAATGTAATTTGTTGGTTGTTTAGTCTGGAATTGTA 2627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2580 CAGTCATTAGGCAAATATATCAGAGAATGTAATTTGTTGGTTGTTTAGTCTGGAATTGTT 2639
Query 2628 -CTACAAGCAGATATAtttttttttCTaaaaaaaCTTTTGG-AG--TCGGAGGGAGGACG 2683
|||||| ||||| | |||||||| |||||||||||||| || ||||||||||||
Sbjct 2640 TCTACAATCAGAT-T-TTTTTTTTA--AAAAAAACTTTTGGTAGAGTCGGAGGGAGGA-- 2693
Query 2684 ACGCTGAGAAGTAGTAGTTTTAAGATAAGCAGCTTTGTTTGTGT--ATACCATTTAACAT 2741
| | | | |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2694 A-G---A-A-GTAGTAGTTTTAAGATAAGCAGCTTTGTTTGTGTGTATACCTTTTAACAT 2747
Query 2742 AAGCTCCTTTAGGATTCATGCCCAACTTGAACACCCTTTTGATTTTTGGGT 2792
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2748 AAGCTCCTTTAGGATTCATGCCCAACTTGAACAGCCTTTTGATTTTTGGGT 2798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106805046980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5