BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55690.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357809 jgi|Araly1|357809|fgenesh1_pg.C_scaffold_8001596 1218 0.0
> Ahg357809 jgi|Araly1|357809|fgenesh1_pg.C_scaffold_8001596
Length=1533
Score = 1218 bits (659), Expect = 0.0
Identities = 760/810 (94%), Gaps = 1/810 (0%)
Strand=Plus/Plus
Query 13 ATGGTAAAGATGACGAGGATAACGAACGAGAAAACGAGGATAACGACTTACAAGAAGAGG 72
|||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTAAAGATGGTGAAGATAATGAACGAGAAAACGAGGATAACAACTTACAAGAAGAGG 60
Query 73 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGTGTGGACACTTGT 132
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGT 120
Query 133 GTCATTGTGTACGGCCCGAGCAGAGCAGGGGACGAAATGGTCATGGAGCCCGAGTTATGG 192
||||||||||||||||||||||||||||||| || |||||| |||||| ||| |||||
Sbjct 121 CTCATTGTGTACGGCCCGAGCAGAGCAGGGGATGAGATGGTCGCGGAGCCAGAGCTATGG 180
Query 193 CCAAAGGATGGGAGCAAAGTCCGTGAAATCTTAACCAAGTACAGAGACACTGCGTCAAGC 252
|||||||||| ||| ||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 181 CCAAAGGATGAGAGGAAAGTCCGTGAAATCATAACCAAGTACAGGGACACTGTGTCAAGC 240
Query 253 AGCTGCACCAAGACATACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAGGTGGAG 312
| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 241 AACTGCACCAAGACTTACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAAGAGGAG 300
Query 313 AAACCGACGATTGCGACAAAGTATCCTACATGGGACAAAAAGCTCGACCAGTGTTCTTTA 372
||||||| |||||| | ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 301 AAACCGAAGATTGCAATGGAGTATCCTACATGGGACAAAAAGCTTGACAAGTGTTCTTTA 360
Query 373 AATGACCTCTATGCGGTTTTCATGGCAGTAGAAAACAAGATCCAAGAGGCTACGAATAGG 432
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AATGATCTCTATTTGGTTTTCATGGCAGTAGAAAACAAGATCCAGGAGGCTACGAATAGG 420
Query 433 AATCAGACATTTCCTGACACTAGTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 492
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AATCAGACATTTCCTGACACTACTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 480
Query 493 AATCGGCAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGATTACAACGGG 552
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AATCAACAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGAGCACAACGGG 540
Query 553 CTCTCTTTCTTCCCTTTTAATAACCAGATGACCTCAAATACTGCGGAAGTGTCTTCCTTC 612
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 541 TTCTCTTTTTTCCCTTTTAATAACCAGATGACCTCAAATACCGCGGAAGTGGCTTCCTTC 600
Query 613 TCGAATGTGACAGAGCCGATGATAGCGAACGGGCAAAGCTTGTTTTACGGGAGTTGTTCG 672
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 601 TCGAATGTGACAGAGCCGATGATAGCAAACGGGCAAAACTTGTTTTACGGGAGTTGTTCG 660
Query 673 GATGGTCCATATGGTCCGATGGTACAGAGGACAGCTTATATGGAGCCAATACATTGGGGT 732
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GATGGTCCATATGGTCCGGTGGTACAGAGGACAGCTTATATGGAGCCAATACAATGGGGT 720
Query 733 TTAGGAAACAGTATGTTCAACAATGTGAAGCAGTTCCAAGATTATCCCTTCAGGTTTGCA 792
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTAGGAAACAGTGTGTTCAACAATGTGAAGCAGTTCCAAGATTATCCATTCAGGTTTGCA 780
Query 793 CAAGTTAATGATTTGGAGGATTCAAGTAAA 822
||||||||||| |||||||||||||| |||
Sbjct 781 CAAGTTAATGACTTGGAGGATTCAAG-AAA 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5