BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55700.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495656 jgi|Araly1|495656|fgenesh2_kg.8__1472__AT5G55700.1 3247 0.0
> Ahg495656 jgi|Araly1|495656|fgenesh2_kg.8__1472__AT5G55700.1
Length=1958
Score = 3247 bits (1758), Expect = 0.0
Identities = 1898/1965 (97%), Gaps = 12/1965 (1%)
Strand=Plus/Plus
Query 8 aaaaagaaaagaaaaagagaaaTAGAATTTTGCGTTTCAAGTACTCCATCTCCGTCTCTT 67
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGAAAAGAAAAAGAGAAATAAAATTTTGCGTTTCAAGTACTCCATCTCCGTCTCTT 60
Query 68 TTCCTCCGCATCTAAAACCATCTGAGAAATATCTCCGACGAAGGAGAAGAAACGAAAATG 127
|||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||
Sbjct 61 TTCCTCCGCATCTAAAACCATCAGAGAAATATCTCCGACGTAGGAAAAGTAACGAAAATG 120
Query 128 ACGGAGACTGGAGTAATCGGATGTGGCTGTCGCGGAGTCACCGGCGGCAATTTCTTCCAT 187
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 121 GCGGAGACTGGAGTAATCGGATGTGGCTGCCGCGGAGTTACCGGCGGAAATTTCTTCCAT 180
Query 188 CCCGGAGGATTTTCTTTGAAATCTTGTTTCCTCGAGCAGAGTACAAAGCGTAATCGTAAC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCCGGAGGATTTTCTTTGAAATCTTGTTTCCTCGAGCAGAGTACAAAGCGTAATCGTAAC 240
Query 248 TTTTTCCGAAGCGTTTCTATGATTCCTCCTTTCAAACGCGGTCGTTTCATCACTAAGTTG 307
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 241 TTTTTCCGAAGCGTTTCTATGATTCCTCCTTCCAAACGCGGCCGTTTCATCACTAAGTGG 300
Query 308 CGTTCCGTCGCCGGGAACAGCCGAATCTTTAGCATGGATGCTCGAGAGAAATCACGATCG 367
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CGTTCCGTCGCCGGAAACAGCCGAATCTTTAGCATGGATGCTCGAGAGAAGTCACGATCG 360
Query 368 TTTGTGTTGGTATCATCAAGGCACAAGAGAGTTCCAGTTTTTGTGATGATGCCGATTGAT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TTTGTGTTGGTATCATCAAGGCACAAGAGAGTTCCAGTTTTTGTGATGATGCCAATTGAT 420
Query 428 ACATTTGGAATTGATGCTTCTGGGTGTCCAAAGATTAAAAGGCTCAAGGCTTTAACTGTA 487
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 ACATTTGGAATTGATGCTTCTGGGTGCCCAAAGATTAAAAGGCTCAAGGCTTTAACTGTT 480
Query 488 TCTCTTAAGGCACTCAAGTTAGCTGGTGTTCATGGAATCGCAGTTGAGGTTTGGTGGGGG 547
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCTCAAGGCACTCAAGTTAGCTGGTGTTCATGGAATCGCAGTTGAGGTTTGGTGGGGG 540
Query 548 ATTGTAGAGCGTTTCTCTCCTCTTGAGTTTAAATGGTCACTGTATGAAGAGCTTTTTAGA 607
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 541 ATTGTAGAGCGTTTCTGTCCTCTCGAGTTTAAATGGTCACTGTATGAAGAGCTCTTTAGA 600
Query 608 CTGATTTCTGAGGCAGGGTTGAAGTTACATGTTGCTCTTTGCTTTCATTCAAATATGCAT 667
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGATTTCTGAGGCAGGGCTGAAGTTACATGTTGCTCTTTGCTTTCATTCAAATATGCAC 660
Query 668 TTGTTTGGTGGGAAAGGAGGCATCAGTCTTCCACTCTGGATCCGAGAGATTGGAGACGTC 727
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTGTTTGGTGGAAAAGGAGGCATCAGTCTTCCACTCTGGATCCGAGAGATTGGAGACGTC 720
Query 728 AATAAGGACATATACTATAGAGATAAAAGCGGATTTTCCAACAATGACTATCTCACACTT 787
|||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||||
Sbjct 721 AATAAGGACATATACTATCGAGATAAAAGTGGACTTTCCAACAATGACTACCTCACACTT 780
Query 788 GGAGTCGATCAACTTCCTTTGTTCGGTGGCCGTACTGCTGTTCAATGCTATGAAGATTTT 847
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 GGAGTCGATCAACTTCCTTTGTTCGGTGGCCGTACTGCTGTCCAATGCTATGAAGATTTT 840
Query 848 ATGCTCAGTTTTTCAACAAAATTTGAGCCATATCTTGGGAATGTGATTGAAGAAATAAGT 907
|||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 841 ATGCTCAGTTTTTCTACAAAATTTGAGCCTTATTTTGGGAACGTGATTGAAGAAATAAGT 900
Query 908 ATAGGTCTTGGTCCTTCGGGGGAGCTTAGATATCCTGCACATCCTTCTGGAGATGGGAGG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATAGGTCTTGGTCCTTCGGGGGAGCTTAGATATCCTGCACATCCTTCTGGAGATGGGAGG 960
Query 968 TGGAAATTTCCTGGAATTGGTGAATTCCAATGCCATGACAAGTACATGATGGAAGACTTG 1027
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGGAAATTCCCTGGAATTGGTGAATTCCAATGCCATGACAAGTACATGATGGAAGACTTG 1020
Query 1028 ATGGCAGTGGCATCCCAAGAAGGCAAACCTCAATGGGGAAGCAGAGATCCTCCGAATACC 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGGCAGTGGCATCCCAAGAAGGCAAACCTCAATGGGGAAGCAGAGATCCTCCGAATACC 1080
Query 1088 GGCTGCTATAATAGCTTTCCATCTGGAGTTCCGTTCTTTGAGGAGGGCAATGATAGCTTT 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGCTGCTATAATAGCTTTCCATCTGGAGTTCCGTTCTTTGAGGAGGGCAATGATAGCTTT 1140
Query 1148 CTCTCTGACTATGGTCGTTTCTTTCTAGAATGGTACAGTGGGAAGTTGATTTGTCATGCT 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTCTCTGACTATGGTCGTTTCTTTCTAGAATGGTACAGTGGGAAGTTGATTTGTCATGCT 1200
Query 1208 GATGCTATTCTTGCAAAGGCAGCCGATGTCTTGCGGAGACGTCAGGAAGAAGAGAAAAGC 1267
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 GATGCTATTCTTGCAAAGGCAGCCGATGTTTTGCGGAGACGTCAGGAAGAAGAGAAAAGC 1260
Query 1268 TCTGTAATGCTGGTTGCAAAAATTGGTGGAATCTATTGGTGGTATAAGACATCTTCACAC 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TCTGTAATGCTGGTTGCAAAAATTGGTGGAATCTATTGGTGGTATAAGACATCTTCACAC 1320
Query 1328 CCCGCTGAACTAACTGCAGGTTATTACAACACCTCCCTCAGGGATGGTTATGATCCTGTA 1387
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 CCCGCTGAACTAACTGCAGGTTATTACAACACCGCCCTCAGGGATGGTTATGATCCTGTC 1380
Query 1388 GCTTCCGTCTTGTCTCGTCATGGTGCTGCTCT-CAACATCCCCTGCTTGGATATGGCAGA 1446
||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1381 GCTTCTGTCTTGTCTCGTCATGGTGCTGCTCTGCAT-ATCCCCTGTTTGGATATGGCAGA 1439
Query 1447 TAGTGAAATACCTGAGAAATATCTTTGCAGCCCTGAAGGATTACGTAGACAGATACATGA 1506
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1440 CAGTGAAACACCTGAGAAATATCTTTGCAGCCCTGAAGGATTGCGTAGACAGATACACAA 1499
Query 1507 TGTTTCGAAGAAGTGGACAATACATGTGACTGGTAGAAACACAAGCGAAAGATTTGATGA 1566
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1500 TGTTTCGAAGAAGTGGACAATACAGGTGACTGGTAGAAACACAAGCGAAAGATTTGATGA 1559
Query 1567 GATGGGACTAAGGCAAATACGAGAGAACTGTGTGCAACCGAATGGCGACACTCTAAGATC 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GATGGGACTAAGGCAAATACGAGAGAACTGTGTGCAACCGAATGGCGACACTCTAAGATC 1619
Query 1627 ATTTACGTTTTGCAGAATGAATGAGAAGATCTTTAGGGTCGAGAACTGGAACAACTTTGT 1686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1620 TTTTACGTTTTGCAGAATGAATGAGAAGATCTTTAGGGGGGAGAACTGGAACAACTTTGT 1679
Query 1687 CCCTTTCATTAGACAGATGAGTGCAGATATGTAAACACACTCAC-C-ACCCATTGGTGTG 1744
||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||
Sbjct 1680 CCCTTTCATTAGACAGATGAGTGCAGATATGTAAA-ACACTCACACCACC-ATTGGTGTG 1737
Query 1745 TTTGTCTTTTGTTACAGAAT-CGATCTTTCCTCACCATATTGCTTTTTCAGATATGTGAT 1803
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 1738 TTTGTCTTTTGTTACAGAATTC-ATCTTTCCTCACCATATTGCTTTTTCAAATATGTGAT 1796
Query 1804 GAGGAGAACTAATCAAATCAAAAATTGTTATATGATAAAATCTCTCTCTGTTTCTATTCT 1863
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1797 GAGGAGAACTAATCAAATCAAAA-TTGTTATATGATAAAATCTCTCTCTGTTTCTATTCT 1855
Query 1864 TCATTTTGTTCTATCTCTATTGCAAAAGTCTTGCAGAAACCTTTTTCATTGGATCAAAAA 1923
||||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1856 TCATTGTGTTCTAACTCTGTGGCAAAAGTCT-GCAGAAACCTTTTTCATTGGATCAAAAA 1914
Query 1924 GTTACATTGTATGTTTTGATTATCAGAAAGC-GATCCAATACAGA 1967
||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1915 GTTACATTGTATGTTTTGATTATCAGAAA-CAGATCCAATACAGA 1958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5