BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55720.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495658 jgi|Araly1|495658|fgenesh2_kg.8__1474__AT5G55720.1 2109 0.0
Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1 148 8e-35
Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1 111 1e-23
> Ahg495658 jgi|Araly1|495658|fgenesh2_kg.8__1474__AT5G55720.1
Length=1399
Score = 2109 bits (1142), Expect = 0.0
Identities = 1329/1416 (94%), Gaps = 25/1416 (2%)
Strand=Plus/Plus
Query 1 ATGTCAATTGTATGTACGTTTTTCTTGTTTCTCTTAAACAC-T-TCTTTTGCGTTTGCAT 58
|||||||||||||||||| |||||||||||||||| ||| | | |||| |||||| || |
Sbjct 1 ATGTCAATTGTATGTACGATTTTCTTGTTTCTCTT-AAC-CGTATCTTCTGCGTTCGCGT 58
Query 59 TTGCGATTCCTAAACCGCCAATAGTAAGG-AGACTATCAACGA-CAGTGACATCAAATTC 116
||||| |||||||||||||||| |||||| | ||||||||| | ||||||||||||||||
Sbjct 59 TTGCGGTTCCTAAACCGCCAATCGTAAGGCA-ACTATCAAC-ATCAGTGACATCAAATTC 116
Query 117 AACAGCGTCTTCTTGCTCAGCCAATGGAAATCCAATCGATGAGTGTTGGAGATGCGACGA 176
|||| | ||||||||||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct 117 AACA--G-CTTCTTGCTCAGCAAATGGAAATCCAATCGATGACTGCTGGAGATGCGATGA 173
Query 177 AAACTGGAAGGACAACCGCAAAAACCTCGCGGATTGCGCGGTTGGATTCGGACGCGACTC 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 174 AAACTGGAAGGACAACCGCAAAAACCTCGCGGATTGCGCGGTTGGATTTGGACGCGACTC 233
Query 237 AATTGGCGGTAGAGCCGGGGAGTTCTACACGGTGACTGATTCAGGAGACGACAATCCTCT 296
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 234 CATTGGCGGTAGAGCCGGAGAGTTCTACACAGTAACTGATTCAGGAGACGACAATCCTCT 293
Query 297 AAATCCAACTCCAGGTACATTACGGTACGCTGCGACACAAGATCAACCTCTATGGATCAT 356
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 AAATCCATCTCCAGGTACATTACGGTACGCTGCAACACAAGATCAACCTCTATGGATCAT 353
Query 357 TTTTGATCGAGACATGGTAATACAACTAAAACAAGATCTTCAAGTAGCTTCATACAAAAC 416
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 354 TTTTGATCGAGACATGGTAATACAACTAAAACAAGATCTCCAAGTAGCATCATATAAAAC 413
Query 417 CATTGATGGTAGAGGAAATAACGTACAAATAGCTTATGGACCGTGTTTAACTTTATATAA 476
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 414 CATTGATGGTAGAGGAAATAACGTGCAAATAGCTTATGGGCCGTGTTTAACTTTATATAA 473
Query 477 AGTTAGTAACATTATTATAAACAATCTTTATATTCACGATTGTGTTCCCGTGAAACGGAA 536
||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 474 AGTAAGTAATGTTATTATAAACAATCTTTATATTCACGATTGTGTTCCGGCGAAACGGAA 533
Query 537 TGCTTTATCGTCGTTGGGAGGATACTCGGATGGAGATGGAATATCGATATTCGAGTCTCG 596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 TGCTTTATCGTCGTTGGGAGGATACTCGGATGGAGATGGAATCTCGATATTCGAGTCTCG 593
Query 597 AGATATTTGGATTGATCATTGTACGTTAGAGAAATGTTACGATGGGCTTATTGATGCGGT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGATATTTGGATTGATCATTGTACGTTAGAGAAATGTTACGATGGGCTTATTGATGCGGT 653
Query 657 GAATGGATCCACGGATATAACGATTTCGAATAGTTACATGTTGAATCATAATGAAGTCAT 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAATGGATCAACGGATATAACGATTTCGAATAGTTACATGTTGAATCATAATGAAGTCAT 713
Query 717 GCTTTTGGGCCATAGTGATGAGTATTCCGGTGATCGGGATATGCGAGTTACGATCGCGTT 776
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 GCTTTTGGGTCATAGTGATGAGTATTCCGGTGATCGGGATATGCGAGTTACGATCGCATT 773
Query 777 TAACTATTTTGGTGAAGGACTTGTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCA 836
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 774 TAACTATTTTGGTGAAGGACTTGTCCAGAGAATGCCGAGGTGCAGGCATGGATATTTTCA 833
Query 837 CATAGTGAATAACATTTATAGAGACTGGAAGATGTATGCTATTGGTGGAAGTGCTAATCC 896
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 834 CATAGTGAATAACATTTATAGAGAGTGGAAGATGTATGCTATCGGTGGAAGTGCTAATCC 893
Query 897 AACGATCTTTAGCCAAGGAAATGTTTTCATAGCTTCCAATAATCAGTTCACCAAGGAGGT 956
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 AACGATATTTAGCCAAGGAAATGTTTTTATAGCTTCCAATAATCAGTTCACCAAGGAGGT 953
Query 957 TACAAAGCGAGAGAGTGCAGATGGAGACGAAGAATGGAAGGAATGGAACTGGAAATCAGA 1016
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 AACAAAGCGAGAGAGTGCAGATGGAGACGAAGAATGGAAGGAATGGAATTGGAAATCAGA 1013
Query 1017 AGGAGACGAAATGGTTAACGGAGCTTTCTTTACACCGTCAGGGAAAGAGGATTCTCCGAG 1076
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1014 AGGAGATGAAATGGTTAACGGCGCTTACTTTACACCGTCAGGGAAAGAGGATTCTCCGAG 1073
Query 1077 CTACGCGAAATTTTCGAGTATGGTAGCTCGACCAGCTTCACTTCTCAAGACCACACATCC 1136
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1074 CTATGCGAAATTTTCGAGTATGGTAGCTCAACCAGCTTCACTTCTCAAGACCACACATCC 1133
Query 1137 ATCAGTAGGTGTTCTTAGTTGCGAAATTGACCAAGCTTGTTAAAAACACAAACATAAGCT 1196
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 ATCAGTAGGTGTTCTTAGTTGTGAAATTGACCAAGCTTGTTAAAA-CACAAACATAAGCT 1192
Query 1197 TGTGACCAAATCTAGTGTTTGTCCTTCtttttcttttttGCT----CTTCTACTTGTTGT 1252
|||||||||||||||| | ||||||||| ||||||||| || ||||| ||| ||||
Sbjct 1193 TGTGACCAAATCTAGTAAT-GTCCTTCTTCTTCTTTTTTTCTTTTACTTCTTCTTCTTGT 1251
Query 1253 GGTTATTGTTATCGTAAATAGGATTTGTACTGAATGTGATGATGATCATAGACCCAAACA 1312
|||||||||||| | | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1252 GGTTATTGTTATAGCACATAGGATTTGTATTGAAT---ATGATGATCATAGACCCAAACA 1308
Query 1313 ACAATTGTTCATTGTCAATTTCTTTACCAAAAAATTTCTTTTACGAGTCACAAAGTTTCG 1372
||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||
Sbjct 1309 ACAATTGTTCATTGTCAATTT-TTTACCAAAAA-TTTCTATTAAGAGTCACTAAGTTTCG 1366
Query 1373 TCAGtttttttATTTATAAATACATTAAAATTACTT 1408
|||| | |||| | |||||||||| ||||||||||
Sbjct 1367 TCAGATATTTT-T--ATAAATACATAAAAATTACTT 1399
> Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1
Length=1517
Score = 148 bits (80), Expect = 8e-35
Identities = 278/369 (75%), Gaps = 32/369 (9%)
Strand=Plus/Plus
Query 565 GATGGAGATGGAATATCGATATTCGAGTCTCGAG--ATATTTGGATTGATCATTGTACG- 621
||||||||||| || ||||| |||| | ||||| ||||||||||||||||| | ||
Sbjct 732 GATGGAGATGGGATTTCGATTTTCG-G-GTCGAGTCATATTTGGATTGATCATAATTCGC 789
Query 622 TTAGAGAAATGTTAC-GATGGGCTTATTGATGCGGTGAATGG-ATCCACGGATATAACGA 679
|| ||| || | | ||||||||||||||||| || |||| || || | ||| || |
Sbjct 790 TT-TCGAATTG-TGCTGATGGGCTTATTGATGCTGT-TATGGCTTCTACTGCTATTACTA 846
Query 680 TTTCGAATAGTTACATGT-TGA-ATCATAATGAAGTCATGCTT-TTGGGCCATAGTGATG 736
| || |||| |||| | | | | || ||||| || ||| || ||||| |||||||||
Sbjct 847 TCTCCAATAATTAC-T-TCACACACCACAATGAGGTTATG-TTATTGGGACATAGTGAT- 902
Query 737 A-GTATTC-CGGTGATCGGGATATGCGAGTTACGATCGCGTT-TAACT-ATTTTGGTGAA 792
| ||| | || ||| || ||||| |||||| || || || ||| | |||| ||||||
Sbjct 903 ACCTATACAAGG-GATAAGGTTATGCAAGTTACAATTGC-TTATAA-TCATTTCGGTGAA 959
Query 793 GGACTTGTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCACATAGTGAATAAC-AT 851
|| ||| | || |||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 960 GGTCTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTAGTGAACAATGAC 1019
Query 852 TTATA-GAGACTGG-AAGATGTATGCTATTGGTGGAAGTGCTAATCCAACGATCTTT-AG 908
| ||| | | ||| || |||||||| || ||||| ||||| | ||| || || | ||
Sbjct 1020 T-ATACGC-ATTGGGAA-ATGTATGCAATCGGTGGCAGTGCGAGTCCTACCAT-TAACAG 1075
Query 909 CCAAGGAAA 917
|||||||||
Sbjct 1076 CCAAGGAAA 1084
> Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1
Length=1685
Score = 111 bits (60), Expect = 1e-23
Identities = 195/256 (76%), Gaps = 25/256 (10%)
Strand=Plus/Plus
Query 778 AACTATTTTGGTGAAGGACTT-GTCCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCA 836
||| ||||||||||||| || |||| ||||||||||||||||||||||||||||| |
Sbjct 1031 AACCATTTTGGTGAAGG-TTTAATCCAGAGAATGCCAAGGTGTAGGCATGGATATTT-C- 1087
Query 837 CATAGTGAAT-AACATTTA-TAGA-G-ACTGG-AAGATGTATGCTATTGGTGGAAGTGCT 891
||| || | | |||| | | || | | | ||| || |||||||| |||||||| ||||||
Sbjct 1088 CAT-GT-AGTTAACAATGACTACACGCATTGGGAA-ATGTATGCAATTGGTGGTAGTGCT 1144
Query 892 AATCCAACGATCTTTAGCCAAGGAAAT-GTTTTCATAGCTTCCAATAATC--AGTTCACC 948
| ||| || ||| || || || ||| | |||| | || |||| || | | || |
Sbjct 1145 AGTCCCACCATCAACAGTCAGGGCAATCGATTTCTT-GCC-CCAACAAACCCATTTG-CT 1201
Query 949 AAGGAGGTTACAAAGCGAGAGAGTGCAGATGGAGA--CGAAGAATGGAAGGAATGGAACT 1006
|||||||| || ||| ||||||| || | ||||| |||| | |||||| | ||||| |
Sbjct 1202 AAGGAGGTGACTAAG--AGAGAGTACACA-GGAGAATCGAA-A-TGGAAGCACTGGAATT 1256
Query 1007 GGAAATCAGAAGGAGA 1022
||| ||||||||||||
Sbjct 1257 GGAGATCAGAAGGAGA 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5