BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55730.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495659 jgi|Araly1|495659|fgenesh2_kg.8__1475__AT5G55730.1 2303 0.0
> Ahg495659 jgi|Araly1|495659|fgenesh2_kg.8__1475__AT5G55730.1
Length=1549
Score = 2303 bits (1247), Expect = 0.0
Identities = 1430/1517 (94%), Gaps = 18/1517 (1%)
Strand=Plus/Plus
Query 62 ctcCAACAATGGCCAAGAAGATGAGTTCTCTCATCAT-CATCTTCAACATTCTCCTTCTC 120
||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 44 CTCCAACAATGGCGAAGAAGATGAGTTCTCTCATC-TCCATCTTCAACATTCTCCTCCTC 102
Query 121 CTCACAACT-CAAACCCACGCGCACAACGTCACGCGCCTCCTAGCAAACCACCCATCATT 179
|||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 103 ATCACAA-TCCAAACCCACGCGCATAACGTCACGCGCCTCCTAGCAAACCACCCATCATT 161
Query 180 CTCTTCCTTCAGCCATTTCCTAACACAAACACACCTCGCCGACGAAATCAACCGGAGAAG 239
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 162 CTCCTCCTTCAGCCATTTCCTAACACAAACTCACCTCGCCGACGAAATCAACCGGAGAAC 221
Query 240 AACCATAACCGTTTGCGCAGTAGATAACGCCGCCATGTCAGCATTAACCTCTAAAGGCTA 299
|||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 222 AACCATAACCGTTTGCGCCGTCGATAACGCCGCTATGTCAGCATTAACCTCAAAAGGCTA 281
Query 300 TACACTCTCAACTCTCAAAAACATTCTCTCCCTCCACGTCCTT-TTAGATTACTTCGGAA 358
||| |||||||||||||||||||||| || |||||||||||| || |||||||||||||
Sbjct 282 CACAATCTCAACTCTCAAAAACATTCTTTCTCTCCACGTCCTTCTT-GATTACTTCGGAA 340
Query 359 CCAAAAAACTCCACCAGATCCGTGACGGCTCTGCTCTCGCCGCTACTCTGTTTCAAGCCA 418
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 341 CTAAAAAACTCCACCAGATCCGTGACGGCTCTGCTCTAGCCGCTACTCTGTTTCAAGCCA 400
Query 419 CCGGAGCTGCTCCTGGAACCTCAGGATTCGTTAACATAACGGATCTGAGAGGTGGTAAAG 478
|||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||
Sbjct 401 CCGGAGCTGCTCCTGGAACCACCGGGTTCGTCAATATAACGGATCTGAGAGGTGGTAAAG 460
Query 479 TTGGGTTTGGTCCTGACGGTGGAGATCTGTCTTCTTTCTTTGTTAAATCTATTGAAGAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TTGGGTTTGGTCCTGACGGTGGAGATCTGTCTTCTTTCTTTGTTAAATCTATTGAAGAAG 520
Query 539 TTCCGTATAACATCTCCATTATTCAGATCAGTAGAGTTTTACCGTCGGAGACTGCGGCGG 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 521 TTCCGTATAACATCTCCATTATTCAGATCAGTAGAGTTTTACCGTCTGAGACTGCGGCGG 580
Query 599 CTCCGACTCCTGCTCCGGCGGAGATGAATCTTACCGGAATAATGTCGGCTCATGGATGCA 658
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 581 CTCCGACTCCAGCTCCGGCGGAGATGAATCTCACCGGAATAATGTCTGCTCATGGATGCA 640
Query 659 AAGTGTTTGCTGAGACTCTTCTCACTAACCCTGGAGCTTCAAAAACCTATCAGGAGAGTT 718
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAGTGTTCGCTGAGACTCTTCTCACTAACCCTGGAGCTTCAAAAACCTATCAGGAGAGTT 700
Query 719 TAGAAGGAGGCATGACAGTGTTCTGTCCAGGAGATGATGCAATGAAAGGTTTCTTGCCCA 778
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 701 TAGAAGGAGGCATGACAGTGTTCTGTCCAGGAGATGATGCCATGAAAGGATTCTTGCCCA 760
Query 779 AATACAAGAACTTGACAGCTCCAAAGAAAGAAGCATTTC-TCGATTTCCTCGCTGTCCCG 837
|||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 761 AATACAAGAACTTGACAGCTCCAAAGAAAGAAGC-TTTCCTCGATTTCCTTGCTGTCCCG 819
Query 838 ACATATTACTCAATGGCGATGCTCAAATCCAACAATGGTCCGATGAACACACTTGCGACA 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 820 ACATATTACTCAATGGCGATGCTTAAATCCAACAATGGTCCGATGAACACACTCGCGACA 879
Query 898 GATGGAGCTAACAAGTTTGAGCTTACTGTACAGAACGATGGAGAGAAGGTTACCCTCAAG 957
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 880 GATGGAGCCAACAAGTTTGAGCTTACTGTACAGAACGATGGAGAGAAAGTTACACTCAAG 939
Query 958 ACAAGGATCAACACTGTCAAGATCGTTGATACTCTTATTGATGAGCAGCCTTTAGCTATA 1017
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 940 ACAAGGATCAACACTGTCAAGATCGTTGATACTCTCATCGATGAGCAGCCTTTGGCTATT 999
Query 1018 TATGCGACTGATAAGGTTTTGTTGCCTAAAGAGTTGTTTAAGGCTTCGGCTGTTGAAGCT 1077
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1000 TATGCTACGGATAAGGTTTTGTTGCCTAAAGAGCTGTTTAAGGCTTCGGCTGTTGAAGCT 1059
Query 1078 CCGGCTCCTGCTCCGGCACCAGAGGATGGTGATGTTGCGGATTCTCCAAAAGCGGCTAAA 1137
|| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1060 CCCGCTCCTGCACCGGCACCAGAGGATGGTGATGCTGCGGATTCTCCAAAACCGGCTAAA 1119
Query 1138 GGGAAAGCGAAAGGAAAGAAGAAGAAGGCTGCACCGTCGCCAGATAATGATCCTTTTGGT 1197
||||||| |||||| |||||||||||||||||||||||||| ||| | ||| |||||||
Sbjct 1120 GGGAAAGGGAAAGGGAAGAAGAAGAAGGCTGCACCGTCGCCCGATGA--ATC-TTTTGGT 1176
Query 1198 GACTCGGATTCGCCTGCCGAAGGGCCTGACGGAGAGGCCGATGATGCGACGGCAGATGAT 1257
||||||||||| ||||| ||||||||||| |||| ||| ||||||||||| |||||||||
Sbjct 1177 GACTCGGATTCACCTGCGGAAGGGCCTGATGGAGTGGCGGATGATGCGACTGCAGATGAT 1236
Query 1258 GCTGGTGCGGTTAGGATCATCGGAGGAGCTAAGGCTGGTTTGGTGGTGAGCTTGCTCTGC 1317
|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1237 GCCGGTGCGGTTAAGATCATCGGAGGTGCTAAGGCTGGTTTGGTGGTGAGCTTGCTCTGC 1296
Query 1318 TTGTTTGCTTCTTCTTGGCTTCTATAGTTTCACTTC--GTTTCTTCTATTCTTCCATGtt 1375
||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||
Sbjct 1297 TTGTTTGCTTCTTCTTGGCTTCTATAGGT-CACTTCTTGTTTCTTCTATTCTTCTATGTT 1355
Query 1376 tttttttttGTGAATCTTTTATTTATGGTTTTTGGGGGAAAGTAAATGAGGATTATTTAT 1435
|||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1356 TTTTTT---GTGAATCTTTTATTTATGGCTTTTCGGGGAAAGTAAATGAGGATTATTTAT 1412
Query 1436 TTCCCTCTATTGTTGAGttttttttATTTATTTAAAAGTTGGTTGTCGAATTAAA-TAGT 1494
||||| ||||| ||||||||||||| ||| ||||||| ||||||||||||||||| ||||
Sbjct 1413 TTCCCCCTATTATTGAGTTTTTTTTTTTTTTTTAAAATTTGGTTGTCGAATTAAAATAGT 1472
Query 1495 CGGTAGTTTATATATTTGTGTGTTCTTGTTTCACGTGTTTGTTTAGTTGATGATGTAAAC 1554
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CGGTAGTTAATATATTTGTGTGTTCTTGTTTCACGTGTTTGTTTAGTTGATGATGTAAAC 1532
Query 1555 AAGTCCTGATTTTGGTG 1571
|||||||||||||||||
Sbjct 1533 AAGTCCTGATTTTGGTG 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5