BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55750.1

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950231 jgi|Araly1|950231|scaffold_802118.1                        401    2e-111


> Ahg950231 jgi|Araly1|950231|scaffold_802118.1
Length=555

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 317/361 (88%), Gaps = 24/361 (7%)
 Strand=Plus/Plus

Query  197  CTCCACCGTCTCCACAGTATTCACCACCCCCACCGCCTTCACAG---T------CTTCAC  247
            |||||| ||||||||||| |||||| || |||||| ||||||||   |      ||||||
Sbjct  210  CTCCACAGTCTCCACAGTCTTCACCGCCTCCACCGTCTTCACAGTCTTCACCACCTTCAC  269

Query  248  CGCCACGTTCTCGCTGCCCTCCTGTTCCGACGACAGGCTGTTGCAACCAACCACCAGGTC  307
            |||||||||||||||||||||||||||||||||||||||||||    ||||||  |   |
Sbjct  270  CGCCACGTTCTCGCTGCCCTCCTGTTCCGACGACAGGCTGTTG----CAACCA--A---C  320

Query  308  CACCACCTTCGACGATGTATTCTCCTCCGTATCCTTATTTTTATACTCCTCCTTATCCTT  367
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  321  CACCACCTTCGACGATGTATTCTCCTCCGTATCCTTACTTTTATACTCCTCCTTATCCTT  380

Query  368  ACGGTACTATTGGCGGAGGGGGACAAGGCGGTGGCGGCCAaggaggaggaggaggaggag  427
            ||||| |||| |||||||||||||||||||||||||| ||||||||||||| |  ||   
Sbjct  381  ACGGTGCTATCGGCGGAGGGGGACAAGGCGGTGGCGGTCAAGGAGGAGGAG-A--AG---  434

Query  428  CCGAAGGCGGTACAACCGGTTCAGCGATGGCTTACTATTCCTCTTCCATTCCCGTATATG  487
            ||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||| || 
Sbjct  435  CCGGAGGTGGTACAACCGGTTCAGCGGTGGCTTACTATTCCTCTTCCATGCCCGTACATC  494

Query  488  TTTTGATGCTTGTGTTAGCTAATGCTTTTATTGTCTTTTAGGTCATACATAGGTTTCAGA  547
            | |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||
Sbjct  495  TCTTGATGCTTGTGTTAGCTAATGCTTTTATTCTCTTTTAGGGCATACATAGTTTTTAGA  554

Query  548  T  548
            |
Sbjct  555  T  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20642173649


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5