BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55760.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497237 jgi|Araly1|497237|fgenesh2_kg.77__1__AT5G55760.1 2575 0.0
Ahg495661 jgi|Araly1|495661|fgenesh2_kg.8__1477__AT5G55760.1 2543 0.0
> Ahg497237 jgi|Araly1|497237|fgenesh2_kg.77__1__AT5G55760.1
Length=1633
Score = 2575 bits (1394), Expect = 0.0
Identities = 1558/1638 (95%), Gaps = 7/1638 (0%)
Strand=Plus/Plus
Query 8 GAGAGGCAGAGAAGGT-GTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCT 66
|||||||||||||||| |||| | |||||||||||||||||||| ||| ||||||||||
Sbjct 1 GAGAGGCAGAGAAGGTGGTTC--C-TCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCT 56
Query 67 TTAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAA 126
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 57 TTAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAA 116
Query 127 TTCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 186
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTCTTCGACCCATCTCATGTACTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 176
Query 187 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 236
Query 247 GATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAA 306
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 237 GATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAA 296
Query 307 GCATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTA 366
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 297 GCATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTA 356
Query 367 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGA 426
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGA 416
Query 427 TCTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGC 486
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCTGGAATACCAAGAGAAAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGT 476
Query 487 CCATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 546
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCATCTTGTGGAGCAAAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 536
Query 547 ACATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGAT 606
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 537 ACATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGAC 596
Query 607 TGGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCT 666
|||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||
Sbjct 597 TGGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCT 656
Query 667 GATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 716
Query 727 AAGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGAC 786
|||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 717 AAGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGAC 776
Query 787 AAGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 846
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 836
Query 847 TCGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACT 906
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 TCTCTCAACATGAAGATTCCTCCATATGTCAGAATCGATCTTTTCCAGATAATCCTAACT 896
Query 907 CAATCTATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 CAATCTTTAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956
Query 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTTTCAGATAACCAG 1016
Query 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076
Query 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1136
Query 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAAAAGAGCATGTAGAGATTATT 1196
Query 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1197 GACAAGGAGGCAGTGCTACAAAGCCTGAGGGAGAAAGCGGTTGAAGAATCCAGTTGCGGG 1256
Query 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316
Query 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376
Query 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACGA 1436
Query 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505
||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1437 AAATCAAAGGCACAGGAAGAAGAATCCAAGGCATAGGAAAGAAGAAAAGAAAGCTTTTGG 1496
Query 1506 TGTATATAAAGAAACACTAGTCTAACCGGAATAGGTAATATGGAAGTTATTGGCGTTTTG 1565
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1497 TGTATATAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTGGCGTTTTG 1556
Query 1566 AGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAAGTTAACCA 1625
|| |||||||||||||||||||||||||||| |||||||| || |||| ||||||||||
Sbjct 1557 AGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAAGTTAACCA 1615
Query 1626 GGAATTGAAAGAGATAAT 1643
||||||||| | ||||||
Sbjct 1616 GGAATTGAAGGGGATAAT 1633
> Ahg495661 jgi|Araly1|495661|fgenesh2_kg.8__1477__AT5G55760.1
Length=1641
Score = 2543 bits (1377), Expect = 0.0
Identities = 1559/1646 (95%), Gaps = 15/1646 (1%)
Strand=Plus/Plus
Query 8 GAGAGGCAGAGAAGGTGTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCTT 67
||||||||||||||||| | ||| |||||||||||||||||||| ||| |||||||||||
Sbjct 1 GAGAGGCAGAGAAGGTG-T-TTCCTCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCTT 57
Query 68 TAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAAT 127
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 58 TAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAAT 117
Query 128 TCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 187
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTTCGACCCATCTCATGTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 177
Query 188 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 237
Query 248 ATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAAG 307
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 238 ATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAAG 297
Query 308 CATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTAG 367
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 298 CATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTAG 357
Query 368 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGAT 427
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGAT 417
Query 428 CTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 487
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 CTGGAATACCAAGAGAGAAGCTTTCGGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 477
Query 488 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 537
Query 548 CATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGATT 607
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 538 CATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGACT 597
Query 608 GGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCTG 667
||||||||||||||||||| ||||| |||||||| || |||||||||||||||| |||||
Sbjct 598 GGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCTG 657
Query 668 ATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 727
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 717
Query 728 AGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGACA 787
||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 718 AGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGACA 777
Query 788 AGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 847
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 837
Query 848 CGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACTC 907
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 838 CTCTCAACATGAAGATTCCTCCATATGTTAGAATCGATCTTTTCCAGATAATCCTAACTC 897
Query 908 AATC-TATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966
|||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 AATCCT-TAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956
Query 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTCTCAGATAACCAG 1016
Query 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AATTACAAAGACGCAGTTCTTGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076
Query 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAATTACAGTGACGGTTGTGACTGTGTCTCC 1136
Query 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||
Sbjct 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAGAAGAGCATGAAGAGATAATT 1196
Query 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1197 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCAGTTGAAGAATCCAGTTGCGGG 1256
Query 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316
Query 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376
Query 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACGA 1436
Query 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505
||||| ||||| | || ||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1437 AAATCAAAGGCACAGGAAGAAGAATCGAAGGCATAGGAAAGAAGAAAAGAAAGCTTTTGG 1496
Query 1506 TGTATATAAAGAA-A---CA--C--TAGTCTAACCGGAATAGGTAATATGGAAGTTATTG 1557
|||||||||| || | || | ||||||||||||||||| ||||||||||||| ||
Sbjct 1497 TGTATATAAACAATAAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTG 1556
Query 1558 GCGTTTTGAGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAA 1617
|||||||||| |||||||||||||||||||||||||||| |||||||| || |||| ||
Sbjct 1557 GCGTTTTGAGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAA 1615
Query 1618 GTTAACCAGGAATTGAAAGAGATAAT 1643
||||||||||||||||| | ||||||
Sbjct 1616 GTTAACCAGGAATTGAAGGGGATAAT 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5