BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55760.1 Length=1729 Score E Sequences producing significant alignments: (Bits) Value Ahg497237 jgi|Araly1|497237|fgenesh2_kg.77__1__AT5G55760.1 2575 0.0 Ahg495661 jgi|Araly1|495661|fgenesh2_kg.8__1477__AT5G55760.1 2543 0.0 > Ahg497237 jgi|Araly1|497237|fgenesh2_kg.77__1__AT5G55760.1 Length=1633 Score = 2575 bits (1394), Expect = 0.0 Identities = 1558/1638 (95%), Gaps = 7/1638 (0%) Strand=Plus/Plus Query 8 GAGAGGCAGAGAAGGT-GTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCT 66 |||||||||||||||| |||| | |||||||||||||||||||| ||| |||||||||| Sbjct 1 GAGAGGCAGAGAAGGTGGTTC--C-TCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCT 56 Query 67 TTAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAA 126 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 57 TTAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAA 116 Query 127 TTCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 186 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 117 TTCTTCGACCCATCTCATGTACTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAA 176 Query 187 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AAGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCT 236 Query 247 GATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAA 306 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 237 GATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAA 296 Query 307 GCATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTA 366 ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 297 GCATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTA 356 Query 367 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGA 426 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 357 GAAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGA 416 Query 427 TCTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGC 486 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TCTGGAATACCAAGAGAAAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGT 476 Query 487 CCATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 546 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 CCATCTTGTGGAGCAAAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAG 536 Query 547 ACATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGAT 606 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 537 ACATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGAC 596 Query 607 TGGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCT 666 |||||||||||||||||||| ||||| |||||||| || |||||||||||||||| |||| Sbjct 597 TGGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCT 656 Query 667 GATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 726 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTC 716 Query 727 AAGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGAC 786 |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 717 AAGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGAC 776 Query 787 AAGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 846 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AAGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAA 836 Query 847 TCGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACT 906 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 837 TCTCTCAACATGAAGATTCCTCCATATGTCAGAATCGATCTTTTCCAGATAATCCTAACT 896 Query 907 CAATCTATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 897 CAATCTTTAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956 Query 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026 ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTTTCAGATAACCAG 1016 Query 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076 Query 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1136 Query 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAAAAGAGCATGTAGAGATTATT 1196 Query 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266 ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1197 GACAAGGAGGCAGTGCTACAAAGCCTGAGGGAGAAAGCGGTTGAAGAATCCAGTTGCGGG 1256 Query 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316 Query 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386 ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376 Query 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446 || |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACGA 1436 Query 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505 ||||| ||||| | || ||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1437 AAATCAAAGGCACAGGAAGAAGAATCCAAGGCATAGGAAAGAAGAAAAGAAAGCTTTTGG 1496 Query 1506 TGTATATAAAGAAACACTAGTCTAACCGGAATAGGTAATATGGAAGTTATTGGCGTTTTG 1565 |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 1497 TGTATATAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTGGCGTTTTG 1556 Query 1566 AGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAAGTTAACCA 1625 || |||||||||||||||||||||||||||| |||||||| || |||| |||||||||| Sbjct 1557 AGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAAGTTAACCA 1615 Query 1626 GGAATTGAAAGAGATAAT 1643 ||||||||| | |||||| Sbjct 1616 GGAATTGAAGGGGATAAT 1633 > Ahg495661 jgi|Araly1|495661|fgenesh2_kg.8__1477__AT5G55760.1 Length=1641 Score = 2543 bits (1377), Expect = 0.0 Identities = 1559/1646 (95%), Gaps = 15/1646 (1%) Strand=Plus/Plus Query 8 GAGAGGCAGAGAAGGTGTTCTTCTTCTTGTCCAAAAGAGAAGACAAAACCTAAATGTCTT 67 ||||||||||||||||| | ||| |||||||||||||||||||| ||| ||||||||||| Sbjct 1 GAGAGGCAGAGAAGGTG-T-TTCCTCTTGTCCAAAAGAGAAGAC-AAATCTAAATGTCTT 57 Query 68 TAGGTTACGCAGAGAAATTATCCTTCATTGAAGATGTTGGTCAAGTCGGCATGGCTGAAT 127 |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 58 TAGGTTACGCTGAGAAATTATCCTTCATTGAAGATGTTGGTCAGGTCGGCATGGCCGAAT 117 Query 128 TCTTCGACCCATCTCATCTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 187 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TCTTCGACCCATCTCATGTTCTACAATGCAAGATTGAAGAACTTGCTAAGTTGATTCAAA 177 Query 188 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AGAGTAAGCATCTAGTAGTCTTTACTGGTGCAGGCATTTCAACTTCTTGTGGTATTCCTG 237 Query 248 ATTTCCGAGGCCCCAAAGGAATTTGGACGTTACAGCGCGAGGGCAAAGATTTACCTAAAG 307 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 238 ATTTCCGAGGCCCCAAAGGAATTTGGACGCTACAGCGCGAGGGCAAAGATTTACCCAAAG 297 Query 308 CATCTCTGCCATTTCACCGTGCAATGCCGAGTATGACCCATATGGCTTTGGTTGAATTAG 367 |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct 298 CATCTCTGCCATTTCATCGTGCAATGCCGAGCATGACTCATATGGCTTTGGTTGAATTAG 357 Query 368 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGATGGCTTACATCTTCGAT 427 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 358 AAAGAGCTGGCATTTTAAAATTTGTTATCAGTCAGAATGTGGACGGCTTACATCTTCGAT 417 Query 428 CTGGAATACCAAGAGAGAAGCTTTCTGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 487 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 418 CTGGAATACCAAGAGAGAAGCTTTCGGAACTGCATGGAGACTCTTTTATGGAGATGTGCC 477 Query 488 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CATCATGTGGAGCAGAGTACCTGCGTGATTTCGAGGTGGAAACTATTGGATTAAAGGAGA 537 Query 548 CATCAAGAAAGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCTTGGATT 607 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 538 CATCAAGAAGGTGTTCTGTTGAAAAGTGTGGAGCTAAACTTAAAGATACGGTCCTAGACT 597 Query 608 GGGAGGATGCTTTGCCTCCAAAAGAAATTGATCCTGCGGAGAAGCACTGCAAAAAGGCTG 667 ||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||| Sbjct 598 GGGAGGATGCTTTGCCTCCGAAAGAGATTGATCCAGCAGAGAAGCACTGCAAAATGGCTG 657 Query 668 ATCTTGTACTCTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 727 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATCTTGTACTTTGTTTGGGTACCAGTTTGCAGATAACCCCTGCTTGCAATTTGCCTCTCA 717 Query 728 AGTGTCTCAAAGGTGGAGGCAAGATCGTCATAGTTAATCTTCAGAAAACACCGAAAGACA 787 ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| |||| Sbjct 718 AGTGTCTCAGAGGTGGAGGCAAGATCGTGATAGTCAATCTTCAGAAAACCCCGAAGGACA 777 Query 788 AGAAAGCAAATGTAGTGATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 847 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AGAAAGCAAATGTTGTAATTCATGGTCTTGTTGATAAGGTGGTTGCAGGGGTCATGGAAT 837 Query 848 CGCTCAACATGAAGATTCCTCCATATGTCAGAATTGATCTTTTCCAGATAATCCTAACTC 907 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 838 CTCTCAACATGAAGATTCCTCCATATGTTAGAATCGATCTTTTCCAGATAATCCTAACTC 897 Query 908 AATC-TATAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCGAGTGTTCAT 966 |||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 898 AATCCT-TAAGCGGAGATCAGAGGTTTATTAATTGGACCCTGCGTGTTGCAAGTGTTCAT 956 Query 967 GGATTGACTTCTCAGTTACCATTCATCAAGTCTATTGAGGTTTCTTTCTCAGATAACCAT 1026 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 957 GGATTGACTTCTCAGTTACCATTCATCGAGTCTATCGAGGTTTCTTTCTCAGATAACCAG 1016 Query 1027 AATTACAAAGACGCAGTTCTCGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1086 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1017 AATTACAAAGACGCAGTTCTTGATAAGCAGCCTTTTCTTATGAAAAGGAGAACAGCACGA 1076 Query 1087 AACGAAACTTTTGATATATTCTTTAAAGTTAACTACAGTGACGGTTGTGACTGTGTCTCC 1146 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1077 AACGAAACTTTTGATATATTCTTCAAAGTTAATTACAGTGACGGTTGTGACTGTGTCTCC 1136 Query 1147 ACTCAACTTAGCCTCCCATTTGAATTCAAGATTTCAACAGAAGAGCATGTAGAGATTATT 1206 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| Sbjct 1137 ACTCAACTTAGCCTCCCATTTGAATTCAAGGTTTCAACAGAAGAGCATGAAGAGATAATT 1196 Query 1207 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCGGTAGAAGAATCCAGTTGCGGG 1266 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1197 GACAAGGAGGCTGTGCTACAAAGCCTGAGAGAGAAAGCAGTTGAAGAATCCAGTTGCGGG 1256 Query 1267 CAAAGCGGTGTGGTTGAGAGAAGAGTGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1326 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1257 CAAAGCGGTGTGGTTGAGAGAAGAGCGGTTTCTGAACCGAGAAGTGAGGCTGTTGTGTAT 1316 Query 1327 GCTACGGTGACTAGTCTCAGGACTTACCATAGTCAACAATCTCTGCTTGCTAATGGAGAC 1386 ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1317 GCTACTGTGACCAGTCTCAGGACTTACCATTGTCAACAATCTCTGCTTGCTAATGGATAC 1376 Query 1387 CTGAAATGGAAGCTGGAAGGTTCTGGAACATCCCGTAAACGCTCTAGAACCGGGAAGCGA 1446 || |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 1377 CTCAAATGGAAGCTGGAAGGTTCTGGAACGTCCCGTAAACGTTCTAGAACCGGCAAACGA 1436 Query 1447 AAATCGAAGGCTCTGGCAGAAGAAACCAAGGCATAGGAA-GAAGAAAAGAAAGCTTTTGG 1505 ||||| ||||| | || ||||||| | |||||||||||| |||||||||||||||||||| Sbjct 1437 AAATCAAAGGCACAGGAAGAAGAATCGAAGGCATAGGAAAGAAGAAAAGAAAGCTTTTGG 1496 Query 1506 TGTATATAAAGAA-A---CA--C--TAGTCTAACCGGAATAGGTAATATGGAAGTTATTG 1557 |||||||||| || | || | ||||||||||||||||| ||||||||||||| || Sbjct 1497 TGTATATAAACAATAAAACAAACACTAGTCTAACCGGAATAGAAAATATGGAAGTTAGTG 1556 Query 1558 GCGTTTTGAGAGCTGAGTGAATTTTGTTTTTGGTCCACATTCGGTTCTCTTGAAACAAAA 1617 |||||||||| |||||||||||||||||||||||||||| |||||||| || |||| || Sbjct 1557 GCGTTTTGAGGGCTGAGTGAATTTTGTTTTTGGTCCACACTCGGTTCT-TTAAAACCGAA 1615 Query 1618 GTTAACCAGGAATTGAAAGAGATAAT 1643 ||||||||||||||||| | |||||| Sbjct 1616 GTTAACCAGGAATTGAAGGGGATAAT 1641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64867687235 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5