BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55800.1

Length=1737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918648 jgi|Araly1|918648|Al_scaffold_0077_2                       224    2e-57


> Ahg918648 jgi|Araly1|918648|Al_scaffold_0077_2
Length=198

 Score =  224 bits (121),  Expect = 2e-57
 Identities = 165/186 (89%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  1003  GCTTATGACGAAAATACGTATTGTCGAGGGTGTGCGCTTCCGA-TCTATGAAGGTCAATT  1061
             ||||||||| |||| | |||||||||||||||||||||||| | |||| |||||||| ||
Sbjct  4     GCTTATGACAAAAACAAGTATTGTCGAGGGTGTGCGCTTCC-AGTCTACGAAGGTCAGTT  62

Query  1062  CTATTCATGCATGGAATGCGACTTTATCCTCCATGAAAGTTGTGCAAATGCTCCATGCAT  1121
             ||||||||||||||||||| | || || ||||||||||||||||| ||||||||| ||||
Sbjct  63    CTATTCATGCATGGAATGCAAGTTCATACTCCATGAAAGTTGTGCCAATGCTCCACGCAT  122

Query  1122  GAAGCGACATCCCTTACATCCATATCCACTTACACTTTTA-AACACGGCATCTCCTGGTG  1180
             ||| |||||||||||||||||||||||||||||||||  | || | ||||||| ||||| 
Sbjct  123   GAAACGACATCCCTTACATCCATATCCACTTACACTTG-ACAATATGGCATCTGCTGGTA  181

Query  1181  AGGAAA  1186
             ||||||
Sbjct  182   AGGAAA  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65172409195


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5