BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55810.2
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495663 jgi|Araly1|495663|fgenesh2_kg.8__1479__AT5G55810.1 499 2e-140
> Ahg495663 jgi|Araly1|495663|fgenesh2_kg.8__1479__AT5G55810.1
Length=830
Score = 499 bits (270), Expect = 2e-140
Identities = 331/361 (92%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 565 GAATCTCTCAAAGTCATGCTACTATGTGGCTCGGATTTACTGCTATCTTTCTGCACTCCC 624
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 429 GAATCTTTCAAAGTCATGCTTGTATGTGGCTCGGATTTACTGCAATCTTTCTGCATTCCT 488
Query 625 GGTGTTTGGATCCCTGAACAGTTAAGAACTATTTGCAAAGATTATGGCATTGTGTGCATC 684
||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||
Sbjct 489 GGTGTTTGGATCCCTGAACAGGTAAGAACTATTTGTAACGACTATGGCATTGTGTGCATC 548
Query 685 CGTAGAGAAGGACAAGATGTTGAAAATATGATCTCTGGTGACGA-AATCTTAAACGAAAA 743
|||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 549 CGTAGAGAAGGACAGGATGTTGAAAATATGATCTCTGGCGAC-ACAATCTTAAACGAAAA 607
Query 744 CTGTGCTAACGTCAAAATCGTTGACAATACTGTTCCTAATCAAATCAGTTCGAGTAGATT 803
| || |||| | ||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 608 CCATGGTAACATAAAAATCGTTGACAATTTTGTTCCTAATCAGATCAGTTCGTGTAGATT 667
Query 804 AAGGCAATGCATTTCGCGAGGGTTATCGGTTAAATACTTGACTGAAGATGGAGTAATAGA 863
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 668 AAGGCAATGCATTTCACGAGGGTTATCGGTTAAGTACTTGACTGATGATGGAGTAATAGA 727
Query 864 TTATATCAGACAACATCAACTATACACTGAGCTCACATGACAAACGCTGAGAGGATTATT 923
||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||
Sbjct 728 TTATATCAGACAACATCAACTTTACAGTGAGCTCACATGACAAAAGCTGAGAGGAATATT 787
Query 924 A 924
|
Sbjct 788 A 788
Score = 440 bits (238), Expect = 1e-122
Identities = 365/422 (86%), Gaps = 26/422 (6%)
Strand=Plus/Plus
Query 81 GAGACTGAGATTCAATCATCAGAGTTCAATGGATGTCCCGTTACCAGTCGAGAAATTATC 140
|||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 23 GAGACTCAGATTCGATCATCGGAGTTCAATGGATGTCCCCTTACCAGTCGAGAAATTATC 82
Query 141 TTATGGATCAAACACTGAGGACAAAACTTGTGTAGTGCTTGTGGCAACTGGGAGTTTCAA 200
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 TTATGAATCAAACCCTGAGGACAAAACTTGTGTAGTGCTTGTGGCAACTGGGAGTTTCAA 142
Query 201 TCCTCCTACTTTCATGCATTTACGCATGTTTGAGCTGGCGAGAGATGAATTACGCTCAAA 260
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 143 TCCTCCAACTTTCATGCATTTACGCATGTTTGAGCTGGCGAGAGATGAATTACACTCAAA 202
Query 261 AGGATTTCATGTTCTTGGAGGATATATGTCTCCTGTTAATGATGCATATAAGAAGAAGAT 320
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 203 AGGATTTCATGTTCTTGGAGGCTATATGTCTCCTGTTAATGATGCGTATAAGAAGAAG-- 260
Query 321 TATGTGTAGGGCCTTTTATCTGCAGAACATCTTCTCTTTAG-TG-G-AA-CAATGCGTTG 376
| | |||||||||||||||||||| | | | || || | || | | || | |
Sbjct 261 ---G-G-----CCTTTTATCTGCAGAACATCGT-T-TAGAGATGTGTAATCTA-GCCT-G 307
Query 377 TT-TA-CAAAAA-TGTGGAA-GCT-GTTTC-TAC-AGGCATCTCAAAGCAACTACCAACG 429
| || | | | || || | | | | | | ||||||||||||||| |||||||||
Sbjct 308 TCATAGCTCTGACTTTGTAATGGTTGATCCGTGGGAGGCATCTCAAAGCAGCTACCAACG 367
Query 430 AACTTTGACGGTTTTATCAAGGGTCAAGACTTTCTTAACAACAAATCGACATGTACCCGA 489
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 368 AACTTTGGCGGTTTTATCAAGGGTCAAGACTTTCTTAACAACAATTCGACGTGTACCCGA 427
Query 490 GG 491
||
Sbjct 428 GG 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5