BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55820.1 Length=5481 Score E Sequences producing significant alignments: (Bits) Value Ahg357817 jgi|Araly1|357817|fgenesh1_pg.C_scaffold_8001604 3230 0.0 > Ahg357817 jgi|Araly1|357817|fgenesh1_pg.C_scaffold_8001604 Length=5346 Score = 3230 bits (1749), Expect = 0.0 Identities = 2132/2310 (92%), Gaps = 54/2310 (2%) Strand=Plus/Plus Query 3055 GGAGACATTCTCGAGTC-AGATTATGTTAGAGA-AGCAGTACATCATAGGGAGGAAGCCG 3112 ||||||||||||||| | ||||| |||| | || | |||||||||||| ||| ||||||| Sbjct 3034 GGAGACATTCTCGAG-CTAGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091 Query 3113 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 3172 ||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||| Sbjct 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151 Query 3173 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3232 || |||||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| Sbjct 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211 Query 3233 GATTTGAAGAGAGTTATTTACTCAAGGAAGCTGGATTGATGAGTCCTGCCTCGCTTTCCT 3292 |||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||| Sbjct 3212 GATTTGAAGAGAGTTACTTATTCAAGGAAGCTGGATTGATGAGCCCTGCCTCACTTTCCT 3271 Query 3293 ACAGAACAGAACAGCTAAGTGTACAGAGGAGTCAAATTGCTCCAGATCACAGAGTTGGAT 3352 |||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| Sbjct 3272 TCAGAACAGAACAGCCAAGTGTACAGAAGAGCCAAATTGCTCCAGATCACGGAGTTGGAT 3331 Query 3353 CAGAAAATATTAACTTTTTTCCATATGCTGGTGAAACCTCACATGGATTAGCTAGTTGTA 3412 ||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 3332 CAGAAAAGATGAACTTTTTGCCATATGCTGGAGAAACCTCACATGGATTAGCTAGTTGCA 3391 Query 3413 TTGTTCGCGACTCAGATAG-TTCTCCTTGCTTAACACCCTTGGGTTTGATAAGCTCAGAC 3471 |||||| ||| |||||| | ||||||||| || ||||||||||||||||||||||||| Sbjct 3392 TTGTTCACGATTCAGAT-GATTCTCCTTGTTTTTCACCCTTGGGTTTGATAAGCTCAGAT 3450 Query 3472 GATGGAAGCCCCCCTGTCTTGGAGGGTTTTATTATCCAGACTGATGATGAAAATCAAAGC 3531 ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||||||| Sbjct 3451 GATGGAAGCCCCCCTGTTTTGGAGGGCTTTATAATCCAAACGGATGATGAAAATCAAAGC 3510 Query 3532 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCAAGAACTACAGCAGAAAGT 3591 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 3511 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCGAGGACTACAGCAGAAAGT 3570 Query 3592 GCAGCCATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCGTCATTACATCTG 3651 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 3571 GCAGCAATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCATCATTACAGCTG 3630 Query 3652 GCTAAAACATTTAAGTTCGATGAAAAACTAGACTTGGATCAGTCTGTTTCAACCGAGCTG 3711 ||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||| Sbjct 3631 GCTAAAACATTTAAGTTGGATGGAAAACTAGACTTGGATCAGTCCATTTCAAACGAGCTG 3690 Query 3712 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3691 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3750 Query 3772 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTTTGCCT--G---G-TACTGGC 3825 ||||||||||||||||||||||||||||||||||||||| ||||| | | | ||||| Sbjct 3751 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTCTGCCTCTGTTTGGTGCTGGC 3810 Query 3826 TCATCTGCTGAGGCTAGGAATCCTTGCATGTCACCAACTGAGAAGCTGTGGTATAGAAGT 3885 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 3811 TCATCTGCTGAGGCTAGGAATCCTTGCACGTCACCAACTGAGAAGTTGTGGTATAGAAGT 3870 Query 3886 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCACTCAGACACCAGACCTACCTTGCATT 3945 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3871 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCAGTCAGACACCAGACCTACCTTGCATT 3930 Query 3946 AGCGAAGAGAATGAGAACATAGAAGAGGAAGCTGAGAACTTATGTACGAACACTCCAAAG 4005 ||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||| Sbjct 3931 AGCGAAGAGAATGAGAATGTAGAAGAGGAGGCTGACAACTTATGTATGAACACTCCAAAG 3990 Query 4006 TCTATGAGGTCAGAGAAGCGAGGAAGTTCAATTCCGGAACTTCCTTGCATAGCTGAAGAG 4065 ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 3991 TCTATGAGGTCGGAGAAGCGAGGAAGCTCAATTCCGGACCTTCCTTGCATAGCTGAGGAG 4050 Query 4066 AACGAAAACATAGATGAGATATCTGATGCTGTCAATGAAGCATCTGG-TTCTGAAAGGGA 4124 || ||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||| Sbjct 4051 AATGAAAACATAGATGAGATATCTGAAGCTGTCAATGAAGGATCTGGGTT-TGAAAGGGA 4109 Query 4125 GAATGTGTCTGCTGAAAGGAAACCTCTTGGTGATGTTAATGAAGATCCTATGAAGCTTCT 4184 ||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| |||| Sbjct 4110 AAATGTCTCTGCTGAAAGGAAACCTCATGGTGATGATAATGAAGACCCTATGAAGTTTCT 4169 Query 4185 TCCATCTGTTTCTGAAGCCAAGATTCCTGCCGATAGACAGAGTCTAGACTCTGTCAGTAC 4244 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| Sbjct 4170 TCCATCTGTTTCTGAAGCCAAGATTTCTGTTGATAGACAGAGTCTAGACTCTGTCAATAC 4229 Query 4245 TGCATTCAGCTTTTCAGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4304 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4230 TGCATTCAGCTTTTCCGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4289 Query 4305 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTGCTAAAAGAAATGT 4364 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 4290 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTACTAGAAGAAATGT 4349 Query 4365 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGTTTGACAAC 4424 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4350 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGCTTGACAAC 4409 Query 4425 TGTAGGTCCACGGTTACAAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4484 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4410 TGTAGGTCCACGATTACCAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4469 Query 4485 TTCGTTCGTTCCACTAGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGGAAAAG 4544 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 4470 TTCGTTCGTTCCACTTGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGCAAGAG 4529 Query 4545 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4530 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4589 Query 4605 AGAGAATGATCGTAAGCTGAAGAAGGAAGCTATGAAGCTTGAACGGGCaaaacaggaaca 4664 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4590 AGAGAATGATCGTAAGATGAAGAAGGAAGCTATGAAGCTTGAACGGGCAAGACAGGAACA 4649 Query 4665 ggaaaatctgaaaaagcaagagatagagaagaaaaagaaagaagaagatcgaaagaaaaa 4724 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4650 GGAAAATCTGAGAAAGCAGGAGATAGAGAAGAAAAAGAAAGAAGAAGATCGAAAGAAAAA 4709 Query 4725 ggaggcagaaatggcttggaagcaggagatggaaaagaaaaagaaagaagaagaaaggaa 4784 |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct 4710 GGAGGCAGAAATGGCTTGGAAGCAAGAGATGGAAAAGAAAAAGAAGGAAGAAGAGCGGAA 4769 Query 4785 gagaaaggagtttgaaatggctgataggaaaaggcagagggaagaagaagaCAAAAGGTT 4844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4770 GAGAAAGGAGTTTGAAATGGCTGATAGGAAAAGGCAGAGGGAAGAAGAAGACAAAAAGTT 4829 Query 4845 GAAGGAAGCTaaaaaaaGACAACGCATTGCAGATTTTCAAAGACAACAAAGAGAGGCTGA 4904 |||||||||||||| ||||||||||||| || |||| ||||||||||||||||||| Sbjct 4830 GAAGGAAGCTAAAA---GACAACGCATTGCCGAAATTCAGCGACAACAAAGAGAGGCTGA 4886 Query 4905 TGAAAAGCTTCAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGATGCGAGAA-TAAAAG 4963 |||||| || ||||||||||||||||||||||||||||||||||| ||||| | |||| | Sbjct 4887 TGAAAAACTACAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGAGGCGAGGACTAAA-G 4945 Query 4964 CACAAAAGGAACTCAAAGAAGACCAAAATAATGCTGAGAAAA-CCAGGCAAGCGAATTCT 5022 |||| |||| ||||||||||||||||| |||||||||||||| || | | | || | Sbjct 4946 CACAGAAGGTACTCAAAGAAGACCAAAGTAATGCTGAGAAAATCC-G--A-G-GA---C- 4996 Query 5023 AGGATCCCAGCGGTGAGATCAAAGAGTAATTCTAGTGATGATACCAATGCTTCAAGAAGC 5082 | | ||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 4997 A--A-----GCG---AGATCAAAGAGTAATTCCAGTGACGATACCAATGCTTCAAGAAGC 5046 Query 5083 TCTAGAGAAAATGATTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAAGC-CAA 5141 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 5047 TCTAGAGATACTGACTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAA-CACAA 5105 Query 5142 CATGGGAATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCAGATGA 5201 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 5106 CATGGGGATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCGGATGA 5165 Query 5202 CGAAGATGAAGAGGAAGACGACAATGACGACATGTCCAACAAAAAATTCGCTCCTACTTG 5261 ||||||||||||||||||||||| || | | | | ||||||||| | ||||||||| Sbjct 5166 CGAAGATGAAGAGGAAGACGACA-TGTC-A-A-----A-CAAAAAATTTGTTCCTACTTG 5216 Query 5262 GGCCAGCAAGAGCAATGTACGGCTCGCTGTCATTTCCCAACAAAA-CATTGATCCCGATG 5320 |||||||||||||||||| |||||||||||||||||||||||||| | |||||||| || Sbjct 5217 GGCCAGCAAGAGCAATGTCCGGCTCGCTGTCATTTCCCAACAAAATC-TTGATCCCAATA 5275 Query 5321 TTACTTTTCC-TGCAAAAAGCGCCTGTGAT 5349 ||| |||||| |||||||| || ||| ||| Sbjct 5276 TTA-TTTTCCCTGCAAAAAACGTCTGCGAT 5304 Score = 1947 bits (1054), Expect = 0.0 Identities = 1358/1504 (90%), Gaps = 24/1504 (2%) Strand=Plus/Plus Query 876 TCGTAGTAGTGCAAAAGCGTCAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 935 |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 951 TCGTAGTAGTGCCAAAGCATTAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 1010 Query 936 TCCGGGTGGTGATATAGGCTTTGGGATTGCTTCATTAAGGTCTGATAGTGTTAGTGAGAT 995 ||||||||| ||| ||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 1011 TCCGGGTGGAGATGTAGGCTTTGGGATTGCTTCTTTGAGGTCTGATAGTGTGAGTGAGAT 1070 Query 996 AAAGTTATTTAAGCATGATGAAAATGATGAAGAGTGTCGAGAAGAAGTGGAGAACAGTAA 1055 |||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||| Sbjct 1071 TAAGTTATTTAAGCATGATGAGAATGATGAAGAGTGTCAAGACGAAGTGGAGAATAGTAA 1130 Query 1056 TTCTCAAGGTAAAAGAGGAGATCAATGTATTAAGAT-TAGTGTACCTACAGAGTCTTTTA 1114 ||||||||||||| |||| | ||| |||||||| | |||| || ||||||||||| ||| Sbjct 1131 TTCTCAAGGTAAAGGAGGGGGTCAGTGTATTAA-ACGTAGTTTAACTACAGAGTCTCTTA 1189 Query 1115 CCTTGCATCATGAA-GTGGATTCAGTGTCAATA-TCTTCAAGTGGTGA-TGCTTATGCTT 1171 |||||||||| ||| |||| ||| ||| ||| | ||||| ||||| || ||||||||||| Sbjct 1190 CCTTGCATCA-GAAAGTGGCTTCGGTG-CAAAAATCTTCGAGTGG-GAATGCTTATGCTT 1246 Query 1172 CTATTGTACCAGAATGTCTACTCGAGTCTGGTCATGTGAATGACATTGATATATTACAGT 1231 ||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 1247 CTATTGTACCAGAATCTCTACTCGATTCTGGTCATGCGAAAGACATTGATATATTACAGT 1306 Query 1232 CCATTGAGACAATTGATGAAGCGTCTGGCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1291 ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1307 CCATTGAGACACTTGATGAAGTATCTGCCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1366 Query 1292 GCAGAAGTTGCTATGAAACAGCTTATCTCGATGGAAGTACAAGATCTAAAAGCTCAATTC 1351 ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1367 GCAGAAGTTGCAAGGAAACAGCTTATCTCGACGGAAGTACAAGATCTAAAAGCTCAAGTC 1426 Query 1352 AAGATAACTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAATTTTCTGT 1411 ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 1427 AAGGTATCTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAACTTTCCAT 1486 Query 1412 TAACAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCTCAAGCAATAA 1471 || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1487 CAATAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCCCAAGTAATAC 1546 Query 1472 CTACGACTAGTGAAGTTTCTATGGTGACAGATGCGGGAACGAGCATCTTTCAGTCTGAAA 1531 ||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1547 CTATGACTAATGAAGTTTCTATGGTGACAGATGCTGGAACGAGCATCTTTCACTCTGAAA 1606 Query 1532 TCATTGCAAGATCTAGAAGTAATGCTCGAGAAAATAGATCCAAGACCGAGCATTCAGGCT 1591 ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1607 TCATTTCAAGATCCAGAAGTAATGCTCGAGAAAATAGATCCAAGATCGAGCATTCAGGCT 1666 Query 1592 CTGTTGAGTCTTCTTCAATTAACTTGGAGCCAAGAGATTCAATTCCAGTACTGCAAGGTA 1651 |||||||| |||| ||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 1667 CTGTTGAGGATTCTGCAATTGACGTGGAGCCAAGAGATTCAGTTTCAGTACTGCAAGGTA 1726 Query 1652 GCCATGTAAAAGATTCACTGAATCCCTCTAGTGTTGATGCTGAAGGTTTAGTAGTTGAAA 1711 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | Sbjct 1727 GCCATGTAAAAGATTCACTGAATCCCTCTACTGTTGATGTTGAAGGTTTAGTAGTT-A-- 1783 Query 1712 ATATTACTAGCAGCGATCAATCAAAAGAAACGGGTGAATGTGTTGACACTAACAGATGTT 1771 | | ||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| Sbjct 1784 -T-T-ACTAGCAACGATCAATCAGAAGAAAAGGGTGAATATGTTGACACTAACAGATGTT 1840 Query 1772 CAAGTGCTGAAAGGGTAAGCCAAACTGGTATCTCCCCAGATGAGACCACATTTGCGGGTG 1831 |||||||||||||||||||||||||||| |||||||||||||||||| || || ||||| Sbjct 1841 CAAGTGCTGAAAGGGTAAGCCAAACTGGCATCTCCCCAGATGAGACCTTATGTGTGGGTG 1900 Query 1832 CAATCCAAGACTCTATATCCCAGATCGAGCTTTTGAGCTTTGTTGAGTCCTCTTCAATTG 1891 |||||||||||||||||||| ||| | |||||||| ||||||||||||| |||||| ||| Sbjct 1901 CAATCCAAGACTCTATATCCAAGACCAAGCTTTTGGGCTTTGTTGAGTCGTCTTCAGTTG 1960 Query 1892 AACTGCAGTCGAGACACTCAGTCAA-GCAATCAGACGATGAAAGTGTATTGTTGAAGCCC 1950 ||| |||||| ||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 1961 AACCGCAGTCTAGACACTCAGT-AATGCAATCAGACGATGAAAGTGTATTTTTGAAGCCT 2019 Query 1951 GTTACTGTTAATGGCGAAGCTTTATTAGTGGAGGAAGATAACAATGGTG-AGTCAACTGA 2009 || |||||| ||| |||| ||||||||||||||||||||||||||||| | || | ||| Sbjct 2020 ATTGCTGTTACTGGTGAAGTTTTATTAGTGGAGGAAGATAACAATGGTGTA-TCGATTGA 2078 Query 2010 AATTAGCGGTATTTCAAAATCTAGAAGTTTAAGCCAAACTGACATCACGGTAGTTTTGCC 2069 ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||| ||| Sbjct 2079 AATTAGCAGTATTTCAAGTTCTAGAAGTTTAAACCAAACAGACATCACGGTAGTTGAGCC 2138 Query 2070 AGTGGTGGTGGAATCTATTCTTAATGAAAGTGGTACT-CCGGAAAAATTGATTGACCATT 2128 | ||||||| ||| |||||||| | ||||| |||| | |||| ||| |||||| |||||| Sbjct 2139 ATTGGTGGTTGAAGCTATTCTTCAGGAAAGCGGTA-TGCCGGCAAACTTGATTAACCATT 2197 Query 2129 CTAAAAGATGTGATATCAGTTGTGGGTCCAAGGAAGTACAGCCACTGGGTTCATTGACCG 2188 ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 2198 CTATAAGATGTGATATTAGTTGTGGGTCCAAGGAAGTGCAGCCACTGGGTTCATTGACCC 2257 Query 2189 AAG-TGGGGAGTAACCAAAGCCATGGAATAATTAGTAGGGCAAGAAGCTCA-CTCATAGA 2246 ||| |||| |||| |||| |||||| || |||||||||| ||||||||||| | |||||| Sbjct 2258 AAGCTGGG-AGTAGCCAATGCCATGAAAGAATTAGTAGGCCAAGAAGCTCAGC-CATAGA 2315 Query 2247 AGAGGAATCAGCAAATGACTATAAGGCTCTTTCTGATGGGTCTAATCATAAATCGGCTGA 2306 |||||||||||||||||| |||||||||||||||| | | ||| |||||||||||||||| Sbjct 2316 AGAGGAATCAGCAAATGAATATAAGGCTCTTTCTGTTTGCTCTGATCATAAATCGGCTGA 2375 Query 2307 CAAACAACTTGAAGTTAGAGAAGGAAATTCATTGCTGAGAACCCCTGATCGCCCTGTTTT 2366 ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2376 CAAGCAGCTTGAAGTTAGAGAAGGAAATTCATCGCTGAGAACCCCTGATCGCCCTGTTTT 2435 Query 2367 TGTG 2370 |||| Sbjct 2436 TGTG 2439 Score = 1406 bits (761), Expect = 0.0 Identities = 890/953 (93%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 129 GGCGAATGTGAAGATTGAGAATCTTTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 188 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3 GGCGAATGTGAAGATGGAGAATCATTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 62 Query 189 CGAGCAGGTTC-AGCAACAAGTAGATCTCTATGACCAGCATTTAGCTTCCAAATGCCTAC 247 |||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 63 CGAGCAGG-TCAAGCAACAAGTAGATCTCTATGACCACCATTTAGCCTCCAAATGCCTAC 121 Query 248 TCGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACTTCCG 307 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 122 TTGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACCTCCG 181 Query 308 AGTTAAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTTCATCAAGACCTTCCATCG 367 |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 182 AGTTGAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTCCATCCAGACCTTCCATCA 241 Query 368 TTTGTCCTAGCAGTCGTCCCTTTTCATACCAACGGCCTGTCAGGTTTCTAGCTGACAATG 427 |||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| Sbjct 242 TTTGTCCTAGCAATCGGCCCTTTTCATATCAACGGCCTGTCAGTTTTCTAGCTGACAATG 301 Query 428 TAGTAAGACAAGACCTGACCTCTGTGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 487 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 302 TAGTAAGACAAGACCTGACGTCTATGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 361 Query 488 AGGAACCGCAACACAACCTCTCACACAACTTAGTCAGACAAGTTTCGAATCATTCTCATG 547 |||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 362 AGGAACTTCAACACGACCTCTCACACAACTTAGTCAGACGGGTTTCAAATCATTCTCACG 421 Query 548 AGCAGGATGTTAATATTGCATCTCCTAGAGATGTACATGAGAAAGAGAGATTGCCAGAAA 607 |||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 422 AGCAGGGTGCTAATATTGCATCTCCTAGAGATGTCCATGAGAAAGAGAGACTGCCAGAAA 481 Query 608 GTGTCTCAATCGATTGCAGAGAGAATCAAAGTTGTTCATCTCCCGAACACTCCAAGAATC 667 |||||||||||| ||||| |||||||||||||||| |||||| |||| ||||| |||||| Sbjct 482 GTGTCTCAATCGGTTGCAAAGAGAATCAAAGTTGTCCATCTCTCGAATACTCCCAGAATC 541 Query 668 AGAGAGTTGAAACTAATCTTGATGCTACATCTCCTGGATGTAGCCAAGGGGAAAA-GGTT 726 |||||||||||||||||||||| |||||||||||||||||||||| | || |||| |||| Sbjct 542 AGAGAGTTGAAACTAATCTTGACGCTACATCTCCTGGATGTAGCCTA-GGAAAAAGGGTT 600 Query 727 CCCAAATGTGTCTCAACTACTGGTTGTAAGCGGAAATCTTCATCTCTTGGTTATTGTCAA 786 |||||| ||||||||||||||||||||||||||||| | ||| |||| ||||||| |||| Sbjct 601 CCCAAAAGTGTCTCAACTACTGGTTGTAAGCGGAAACCATCACCTCTCGGTTATTTTCAA 660 Query 787 GAGGAAATTGAACCAGACACTTGCATTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 846 || |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 661 GATGAAACTGAACCAGACACTAGCCTTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 720 Query 847 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCAAAAGCGTCAAAAAGCCGT 906 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 721 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCCAAAGCGTCGAAAAGCCGT 780 Query 907 TCAAACAGTAGAAATGAGCTCAAACCTTCTCCGGGTGGTGATATAGGCTTTGGGATTGCT 966 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 781 TCAAACAGTAGAAATGAGCTCAAACATTCTCCGGGTGGAGATATAGGCTTTGGGATTGCT 840 Query 967 TCATTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAAAATGATGAA 1026 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 TCTTTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAGAATGATGAA 900 Query 1027 GAGTGTCGAGAAGAA-GTGGAGAACAGTAATTCTCAAGGTAAAAGAGGAGATC 1078 || |||||||| || || |||||||||||||||||||||||| |||| |||| Sbjct 901 GAATGTCGAGAC-AACGTAGAGAACAGTAATTCTCAAGGTAAAGGAGGGGATC 952 Score = 636 bits (344), Expect = 0.0 Identities = 456/508 (90%), Gaps = 15/508 (3%) Strand=Plus/Plus Query 2372 ACAACTTCGATGAGGTTCCAGAGAATAGTCGAGAAAAATCAA-GCATGGAGAAGGTCCCC 2430 ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 2477 ACAACTTCGATGAGGTTCCAGTGAATAGTCGAGAAAAATCAATG-ATGGAGAAGGTCCCC 2535 Query 2431 ACCCCAGCACCCACCGCAAGGGTGTTTGATGTCCCATCTCTCACTGATTCTGGAGTAAAT 2490 || ||| ||||| | |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 2536 ACACCATCACCCGCTGCAAGGGTATTTGATGTCCCATCTCTCACTGAATCTGGAGTAAAT 2595 Query 2491 TTATCGGCAAACAATGAAATGAATGACATTGAAGATCACAATGGGTTAAACATAGAAATG 2550 | |||||| |||||||||| || | | ||||||||||||||||| ||||||||| Sbjct 2596 CTCTCGGCAGACAATGAAAT---TG--A--G--GATCACAATGGGTTAAAAATAGAAATG 2646 Query 2551 GTAGCAGAAATGGAATCGTATGCAAGCCACCCTGGCTTAAAAGTGGGAGAGAATGAACCT 2610 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 2647 GTACCAGAAATGGAATCGCATGCAAGCCACTCTGGCTTAAAAGTGGGAGAGAATGAACCT 2706 Query 2611 ACAGAGTCAAATACATTCACTGGCCATATAGATGCATTGACAAAGAGACCTCAACATGAA 2670 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 2707 ACAGAGTCAAATACATTCACTGGCCATATAGATGCGTTGAAAAAGAGATCTCAACATGAA 2766 Query 2671 ACATCCTCTGAAAAAGCTGTTCCCCCAATTAAAAGAGATGTAACATGTACAGAAGCAGAT 2730 ||||||| | |||||| |||||||||| |||||||||||||||| ||||||||| ||||| Sbjct 2767 ACATCCTTTCAAAAAGGTGTTCCCCCAGTTAAAAGAGATGTAACTTGTACAGAAACAGAT 2826 Query 2731 GAATGTCATGATCTAGAGAGCCCGATTCAAGA-ATTTTTCTGCTCTAGTTCCCCCATGGG 2789 || | |||||||| | ||||| | ||||| || ||||||||||||||||||| ||||||| Sbjct 2827 GAGTCTCATGATCCAAAGAGCTCTATTCA-GATATTTTTCTGCTCTAGTTCCTCCATGGG 2885 Query 2790 GGGTTCCATGCGGCAGAATAAGCGGAGAAGAATCCTGGAAAAACCAACTAGAAGAGAGCT 2849 |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||| Sbjct 2886 GGGTTCCAGGCGGCAGAATAAGCGGAGAAGAACCCTGGAAAAACCAACTAGTAGAGTGCT 2945 Query 2850 TTCGTCAAGTCCAGGGG-GAGACATTCT 2876 |||||| || ||||||| || | ||||| Sbjct 2946 TTCGTCTAGCCCAGGGGTGAAA-ATTCT 2972 Score = 244 bits (132), Expect = 4e-63 Identities = 172/191 (90%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 2866 GGAGACATTCTCGAGTC-AGATTATGTTAGGGA-AGCAGTACATCATAGGGAGGAAGCCG 2923 ||||||||||||||| | ||||| |||| |||| | |||||||||||| ||| ||||||| Sbjct 3034 GGAGACATTCTCGAG-CTAGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091 Query 2924 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 2983 ||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||| Sbjct 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151 Query 2984 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3043 || |||||||| |||||||||||||||| ||||| ||||| |||| ||||||||||||| Sbjct 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211 Query 3044 GATTTGAAGAG 3054 ||||||||||| Sbjct 3212 GATTTGAAGAG 3222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 207566003142 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5