BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55820.1
Length=5481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357817 jgi|Araly1|357817|fgenesh1_pg.C_scaffold_8001604 3230 0.0
> Ahg357817 jgi|Araly1|357817|fgenesh1_pg.C_scaffold_8001604
Length=5346
Score = 3230 bits (1749), Expect = 0.0
Identities = 2132/2310 (92%), Gaps = 54/2310 (2%)
Strand=Plus/Plus
Query 3055 GGAGACATTCTCGAGTC-AGATTATGTTAGAGA-AGCAGTACATCATAGGGAGGAAGCCG 3112
||||||||||||||| | ||||| |||| | || | |||||||||||| ||| |||||||
Sbjct 3034 GGAGACATTCTCGAG-CTAGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091
Query 3113 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 3172
||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151
Query 3173 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3232
|| |||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||
Sbjct 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211
Query 3233 GATTTGAAGAGAGTTATTTACTCAAGGAAGCTGGATTGATGAGTCCTGCCTCGCTTTCCT 3292
|||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 3212 GATTTGAAGAGAGTTACTTATTCAAGGAAGCTGGATTGATGAGCCCTGCCTCACTTTCCT 3271
Query 3293 ACAGAACAGAACAGCTAAGTGTACAGAGGAGTCAAATTGCTCCAGATCACAGAGTTGGAT 3352
|||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 3272 TCAGAACAGAACAGCCAAGTGTACAGAAGAGCCAAATTGCTCCAGATCACGGAGTTGGAT 3331
Query 3353 CAGAAAATATTAACTTTTTTCCATATGCTGGTGAAACCTCACATGGATTAGCTAGTTGTA 3412
||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 3332 CAGAAAAGATGAACTTTTTGCCATATGCTGGAGAAACCTCACATGGATTAGCTAGTTGCA 3391
Query 3413 TTGTTCGCGACTCAGATAG-TTCTCCTTGCTTAACACCCTTGGGTTTGATAAGCTCAGAC 3471
|||||| ||| |||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct 3392 TTGTTCACGATTCAGAT-GATTCTCCTTGTTTTTCACCCTTGGGTTTGATAAGCTCAGAT 3450
Query 3472 GATGGAAGCCCCCCTGTCTTGGAGGGTTTTATTATCCAGACTGATGATGAAAATCAAAGC 3531
||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 3451 GATGGAAGCCCCCCTGTTTTGGAGGGCTTTATAATCCAAACGGATGATGAAAATCAAAGC 3510
Query 3532 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCAAGAACTACAGCAGAAAGT 3591
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3511 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCGAGGACTACAGCAGAAAGT 3570
Query 3592 GCAGCCATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCGTCATTACATCTG 3651
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3571 GCAGCAATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCATCATTACAGCTG 3630
Query 3652 GCTAAAACATTTAAGTTCGATGAAAAACTAGACTTGGATCAGTCTGTTTCAACCGAGCTG 3711
||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||
Sbjct 3631 GCTAAAACATTTAAGTTGGATGGAAAACTAGACTTGGATCAGTCCATTTCAAACGAGCTG 3690
Query 3712 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3691 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3750
Query 3772 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTTTGCCT--G---G-TACTGGC 3825
||||||||||||||||||||||||||||||||||||||| ||||| | | | |||||
Sbjct 3751 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTCTGCCTCTGTTTGGTGCTGGC 3810
Query 3826 TCATCTGCTGAGGCTAGGAATCCTTGCATGTCACCAACTGAGAAGCTGTGGTATAGAAGT 3885
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 3811 TCATCTGCTGAGGCTAGGAATCCTTGCACGTCACCAACTGAGAAGTTGTGGTATAGAAGT 3870
Query 3886 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCACTCAGACACCAGACCTACCTTGCATT 3945
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3871 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCAGTCAGACACCAGACCTACCTTGCATT 3930
Query 3946 AGCGAAGAGAATGAGAACATAGAAGAGGAAGCTGAGAACTTATGTACGAACACTCCAAAG 4005
||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||
Sbjct 3931 AGCGAAGAGAATGAGAATGTAGAAGAGGAGGCTGACAACTTATGTATGAACACTCCAAAG 3990
Query 4006 TCTATGAGGTCAGAGAAGCGAGGAAGTTCAATTCCGGAACTTCCTTGCATAGCTGAAGAG 4065
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 3991 TCTATGAGGTCGGAGAAGCGAGGAAGCTCAATTCCGGACCTTCCTTGCATAGCTGAGGAG 4050
Query 4066 AACGAAAACATAGATGAGATATCTGATGCTGTCAATGAAGCATCTGG-TTCTGAAAGGGA 4124
|| ||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||
Sbjct 4051 AATGAAAACATAGATGAGATATCTGAAGCTGTCAATGAAGGATCTGGGTT-TGAAAGGGA 4109
Query 4125 GAATGTGTCTGCTGAAAGGAAACCTCTTGGTGATGTTAATGAAGATCCTATGAAGCTTCT 4184
||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||
Sbjct 4110 AAATGTCTCTGCTGAAAGGAAACCTCATGGTGATGATAATGAAGACCCTATGAAGTTTCT 4169
Query 4185 TCCATCTGTTTCTGAAGCCAAGATTCCTGCCGATAGACAGAGTCTAGACTCTGTCAGTAC 4244
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 4170 TCCATCTGTTTCTGAAGCCAAGATTTCTGTTGATAGACAGAGTCTAGACTCTGTCAATAC 4229
Query 4245 TGCATTCAGCTTTTCAGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4230 TGCATTCAGCTTTTCCGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4289
Query 4305 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTGCTAAAAGAAATGT 4364
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 4290 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTACTAGAAGAAATGT 4349
Query 4365 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGTTTGACAAC 4424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4350 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGCTTGACAAC 4409
Query 4425 TGTAGGTCCACGGTTACAAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4484
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4410 TGTAGGTCCACGATTACCAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4469
Query 4485 TTCGTTCGTTCCACTAGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGGAAAAG 4544
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 4470 TTCGTTCGTTCCACTTGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGCAAGAG 4529
Query 4545 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4530 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4589
Query 4605 AGAGAATGATCGTAAGCTGAAGAAGGAAGCTATGAAGCTTGAACGGGCaaaacaggaaca 4664
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4590 AGAGAATGATCGTAAGATGAAGAAGGAAGCTATGAAGCTTGAACGGGCAAGACAGGAACA 4649
Query 4665 ggaaaatctgaaaaagcaagagatagagaagaaaaagaaagaagaagatcgaaagaaaaa 4724
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4650 GGAAAATCTGAGAAAGCAGGAGATAGAGAAGAAAAAGAAAGAAGAAGATCGAAAGAAAAA 4709
Query 4725 ggaggcagaaatggcttggaagcaggagatggaaaagaaaaagaaagaagaagaaaggaa 4784
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 4710 GGAGGCAGAAATGGCTTGGAAGCAAGAGATGGAAAAGAAAAAGAAGGAAGAAGAGCGGAA 4769
Query 4785 gagaaaggagtttgaaatggctgataggaaaaggcagagggaagaagaagaCAAAAGGTT 4844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4770 GAGAAAGGAGTTTGAAATGGCTGATAGGAAAAGGCAGAGGGAAGAAGAAGACAAAAAGTT 4829
Query 4845 GAAGGAAGCTaaaaaaaGACAACGCATTGCAGATTTTCAAAGACAACAAAGAGAGGCTGA 4904
|||||||||||||| ||||||||||||| || |||| |||||||||||||||||||
Sbjct 4830 GAAGGAAGCTAAAA---GACAACGCATTGCCGAAATTCAGCGACAACAAAGAGAGGCTGA 4886
Query 4905 TGAAAAGCTTCAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGATGCGAGAA-TAAAAG 4963
|||||| || ||||||||||||||||||||||||||||||||||| ||||| | |||| |
Sbjct 4887 TGAAAAACTACAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGAGGCGAGGACTAAA-G 4945
Query 4964 CACAAAAGGAACTCAAAGAAGACCAAAATAATGCTGAGAAAA-CCAGGCAAGCGAATTCT 5022
|||| |||| ||||||||||||||||| |||||||||||||| || | | | || |
Sbjct 4946 CACAGAAGGTACTCAAAGAAGACCAAAGTAATGCTGAGAAAATCC-G--A-G-GA---C- 4996
Query 5023 AGGATCCCAGCGGTGAGATCAAAGAGTAATTCTAGTGATGATACCAATGCTTCAAGAAGC 5082
| | ||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 4997 A--A-----GCG---AGATCAAAGAGTAATTCCAGTGACGATACCAATGCTTCAAGAAGC 5046
Query 5083 TCTAGAGAAAATGATTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAAGC-CAA 5141
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 5047 TCTAGAGATACTGACTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAA-CACAA 5105
Query 5142 CATGGGAATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCAGATGA 5201
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5106 CATGGGGATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCGGATGA 5165
Query 5202 CGAAGATGAAGAGGAAGACGACAATGACGACATGTCCAACAAAAAATTCGCTCCTACTTG 5261
||||||||||||||||||||||| || | | | | ||||||||| | |||||||||
Sbjct 5166 CGAAGATGAAGAGGAAGACGACA-TGTC-A-A-----A-CAAAAAATTTGTTCCTACTTG 5216
Query 5262 GGCCAGCAAGAGCAATGTACGGCTCGCTGTCATTTCCCAACAAAA-CATTGATCCCGATG 5320
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||
Sbjct 5217 GGCCAGCAAGAGCAATGTCCGGCTCGCTGTCATTTCCCAACAAAATC-TTGATCCCAATA 5275
Query 5321 TTACTTTTCC-TGCAAAAAGCGCCTGTGAT 5349
||| |||||| |||||||| || ||| |||
Sbjct 5276 TTA-TTTTCCCTGCAAAAAACGTCTGCGAT 5304
Score = 1947 bits (1054), Expect = 0.0
Identities = 1358/1504 (90%), Gaps = 24/1504 (2%)
Strand=Plus/Plus
Query 876 TCGTAGTAGTGCAAAAGCGTCAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 935
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 951 TCGTAGTAGTGCCAAAGCATTAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 1010
Query 936 TCCGGGTGGTGATATAGGCTTTGGGATTGCTTCATTAAGGTCTGATAGTGTTAGTGAGAT 995
||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1011 TCCGGGTGGAGATGTAGGCTTTGGGATTGCTTCTTTGAGGTCTGATAGTGTGAGTGAGAT 1070
Query 996 AAAGTTATTTAAGCATGATGAAAATGATGAAGAGTGTCGAGAAGAAGTGGAGAACAGTAA 1055
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||
Sbjct 1071 TAAGTTATTTAAGCATGATGAGAATGATGAAGAGTGTCAAGACGAAGTGGAGAATAGTAA 1130
Query 1056 TTCTCAAGGTAAAAGAGGAGATCAATGTATTAAGAT-TAGTGTACCTACAGAGTCTTTTA 1114
||||||||||||| |||| | ||| |||||||| | |||| || ||||||||||| |||
Sbjct 1131 TTCTCAAGGTAAAGGAGGGGGTCAGTGTATTAA-ACGTAGTTTAACTACAGAGTCTCTTA 1189
Query 1115 CCTTGCATCATGAA-GTGGATTCAGTGTCAATA-TCTTCAAGTGGTGA-TGCTTATGCTT 1171
|||||||||| ||| |||| ||| ||| ||| | ||||| ||||| || |||||||||||
Sbjct 1190 CCTTGCATCA-GAAAGTGGCTTCGGTG-CAAAAATCTTCGAGTGG-GAATGCTTATGCTT 1246
Query 1172 CTATTGTACCAGAATGTCTACTCGAGTCTGGTCATGTGAATGACATTGATATATTACAGT 1231
||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 1247 CTATTGTACCAGAATCTCTACTCGATTCTGGTCATGCGAAAGACATTGATATATTACAGT 1306
Query 1232 CCATTGAGACAATTGATGAAGCGTCTGGCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1291
||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1307 CCATTGAGACACTTGATGAAGTATCTGCCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1366
Query 1292 GCAGAAGTTGCTATGAAACAGCTTATCTCGATGGAAGTACAAGATCTAAAAGCTCAATTC 1351
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1367 GCAGAAGTTGCAAGGAAACAGCTTATCTCGACGGAAGTACAAGATCTAAAAGCTCAAGTC 1426
Query 1352 AAGATAACTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAATTTTCTGT 1411
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1427 AAGGTATCTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAACTTTCCAT 1486
Query 1412 TAACAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCTCAAGCAATAA 1471
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1487 CAATAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCCCAAGTAATAC 1546
Query 1472 CTACGACTAGTGAAGTTTCTATGGTGACAGATGCGGGAACGAGCATCTTTCAGTCTGAAA 1531
||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1547 CTATGACTAATGAAGTTTCTATGGTGACAGATGCTGGAACGAGCATCTTTCACTCTGAAA 1606
Query 1532 TCATTGCAAGATCTAGAAGTAATGCTCGAGAAAATAGATCCAAGACCGAGCATTCAGGCT 1591
||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1607 TCATTTCAAGATCCAGAAGTAATGCTCGAGAAAATAGATCCAAGATCGAGCATTCAGGCT 1666
Query 1592 CTGTTGAGTCTTCTTCAATTAACTTGGAGCCAAGAGATTCAATTCCAGTACTGCAAGGTA 1651
|||||||| |||| ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 1667 CTGTTGAGGATTCTGCAATTGACGTGGAGCCAAGAGATTCAGTTTCAGTACTGCAAGGTA 1726
Query 1652 GCCATGTAAAAGATTCACTGAATCCCTCTAGTGTTGATGCTGAAGGTTTAGTAGTTGAAA 1711
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1727 GCCATGTAAAAGATTCACTGAATCCCTCTACTGTTGATGTTGAAGGTTTAGTAGTT-A-- 1783
Query 1712 ATATTACTAGCAGCGATCAATCAAAAGAAACGGGTGAATGTGTTGACACTAACAGATGTT 1771
| | ||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1784 -T-T-ACTAGCAACGATCAATCAGAAGAAAAGGGTGAATATGTTGACACTAACAGATGTT 1840
Query 1772 CAAGTGCTGAAAGGGTAAGCCAAACTGGTATCTCCCCAGATGAGACCACATTTGCGGGTG 1831
|||||||||||||||||||||||||||| |||||||||||||||||| || || |||||
Sbjct 1841 CAAGTGCTGAAAGGGTAAGCCAAACTGGCATCTCCCCAGATGAGACCTTATGTGTGGGTG 1900
Query 1832 CAATCCAAGACTCTATATCCCAGATCGAGCTTTTGAGCTTTGTTGAGTCCTCTTCAATTG 1891
|||||||||||||||||||| ||| | |||||||| ||||||||||||| |||||| |||
Sbjct 1901 CAATCCAAGACTCTATATCCAAGACCAAGCTTTTGGGCTTTGTTGAGTCGTCTTCAGTTG 1960
Query 1892 AACTGCAGTCGAGACACTCAGTCAA-GCAATCAGACGATGAAAGTGTATTGTTGAAGCCC 1950
||| |||||| ||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1961 AACCGCAGTCTAGACACTCAGT-AATGCAATCAGACGATGAAAGTGTATTTTTGAAGCCT 2019
Query 1951 GTTACTGTTAATGGCGAAGCTTTATTAGTGGAGGAAGATAACAATGGTG-AGTCAACTGA 2009
|| |||||| ||| |||| ||||||||||||||||||||||||||||| | || | |||
Sbjct 2020 ATTGCTGTTACTGGTGAAGTTTTATTAGTGGAGGAAGATAACAATGGTGTA-TCGATTGA 2078
Query 2010 AATTAGCGGTATTTCAAAATCTAGAAGTTTAAGCCAAACTGACATCACGGTAGTTTTGCC 2069
||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||| |||
Sbjct 2079 AATTAGCAGTATTTCAAGTTCTAGAAGTTTAAACCAAACAGACATCACGGTAGTTGAGCC 2138
Query 2070 AGTGGTGGTGGAATCTATTCTTAATGAAAGTGGTACT-CCGGAAAAATTGATTGACCATT 2128
| ||||||| ||| |||||||| | ||||| |||| | |||| ||| |||||| ||||||
Sbjct 2139 ATTGGTGGTTGAAGCTATTCTTCAGGAAAGCGGTA-TGCCGGCAAACTTGATTAACCATT 2197
Query 2129 CTAAAAGATGTGATATCAGTTGTGGGTCCAAGGAAGTACAGCCACTGGGTTCATTGACCG 2188
||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2198 CTATAAGATGTGATATTAGTTGTGGGTCCAAGGAAGTGCAGCCACTGGGTTCATTGACCC 2257
Query 2189 AAG-TGGGGAGTAACCAAAGCCATGGAATAATTAGTAGGGCAAGAAGCTCA-CTCATAGA 2246
||| |||| |||| |||| |||||| || |||||||||| ||||||||||| | ||||||
Sbjct 2258 AAGCTGGG-AGTAGCCAATGCCATGAAAGAATTAGTAGGCCAAGAAGCTCAGC-CATAGA 2315
Query 2247 AGAGGAATCAGCAAATGACTATAAGGCTCTTTCTGATGGGTCTAATCATAAATCGGCTGA 2306
|||||||||||||||||| |||||||||||||||| | | ||| ||||||||||||||||
Sbjct 2316 AGAGGAATCAGCAAATGAATATAAGGCTCTTTCTGTTTGCTCTGATCATAAATCGGCTGA 2375
Query 2307 CAAACAACTTGAAGTTAGAGAAGGAAATTCATTGCTGAGAACCCCTGATCGCCCTGTTTT 2366
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2376 CAAGCAGCTTGAAGTTAGAGAAGGAAATTCATCGCTGAGAACCCCTGATCGCCCTGTTTT 2435
Query 2367 TGTG 2370
||||
Sbjct 2436 TGTG 2439
Score = 1406 bits (761), Expect = 0.0
Identities = 890/953 (93%), Gaps = 6/953 (1%)
Strand=Plus/Plus
Query 129 GGCGAATGTGAAGATTGAGAATCTTTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 188
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 GGCGAATGTGAAGATGGAGAATCATTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 62
Query 189 CGAGCAGGTTC-AGCAACAAGTAGATCTCTATGACCAGCATTTAGCTTCCAAATGCCTAC 247
|||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 63 CGAGCAGG-TCAAGCAACAAGTAGATCTCTATGACCACCATTTAGCCTCCAAATGCCTAC 121
Query 248 TCGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACTTCCG 307
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 TTGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACCTCCG 181
Query 308 AGTTAAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTTCATCAAGACCTTCCATCG 367
|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 182 AGTTGAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTCCATCCAGACCTTCCATCA 241
Query 368 TTTGTCCTAGCAGTCGTCCCTTTTCATACCAACGGCCTGTCAGGTTTCTAGCTGACAATG 427
|||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 242 TTTGTCCTAGCAATCGGCCCTTTTCATATCAACGGCCTGTCAGTTTTCTAGCTGACAATG 301
Query 428 TAGTAAGACAAGACCTGACCTCTGTGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 487
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 TAGTAAGACAAGACCTGACGTCTATGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 361
Query 488 AGGAACCGCAACACAACCTCTCACACAACTTAGTCAGACAAGTTTCGAATCATTCTCATG 547
|||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 362 AGGAACTTCAACACGACCTCTCACACAACTTAGTCAGACGGGTTTCAAATCATTCTCACG 421
Query 548 AGCAGGATGTTAATATTGCATCTCCTAGAGATGTACATGAGAAAGAGAGATTGCCAGAAA 607
|||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 422 AGCAGGGTGCTAATATTGCATCTCCTAGAGATGTCCATGAGAAAGAGAGACTGCCAGAAA 481
Query 608 GTGTCTCAATCGATTGCAGAGAGAATCAAAGTTGTTCATCTCCCGAACACTCCAAGAATC 667
|||||||||||| ||||| |||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 482 GTGTCTCAATCGGTTGCAAAGAGAATCAAAGTTGTCCATCTCTCGAATACTCCCAGAATC 541
Query 668 AGAGAGTTGAAACTAATCTTGATGCTACATCTCCTGGATGTAGCCAAGGGGAAAA-GGTT 726
|||||||||||||||||||||| |||||||||||||||||||||| | || |||| ||||
Sbjct 542 AGAGAGTTGAAACTAATCTTGACGCTACATCTCCTGGATGTAGCCTA-GGAAAAAGGGTT 600
Query 727 CCCAAATGTGTCTCAACTACTGGTTGTAAGCGGAAATCTTCATCTCTTGGTTATTGTCAA 786
|||||| ||||||||||||||||||||||||||||| | ||| |||| ||||||| ||||
Sbjct 601 CCCAAAAGTGTCTCAACTACTGGTTGTAAGCGGAAACCATCACCTCTCGGTTATTTTCAA 660
Query 787 GAGGAAATTGAACCAGACACTTGCATTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 846
|| |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 661 GATGAAACTGAACCAGACACTAGCCTTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 720
Query 847 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCAAAAGCGTCAAAAAGCCGT 906
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 721 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCCAAAGCGTCGAAAAGCCGT 780
Query 907 TCAAACAGTAGAAATGAGCTCAAACCTTCTCCGGGTGGTGATATAGGCTTTGGGATTGCT 966
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 781 TCAAACAGTAGAAATGAGCTCAAACATTCTCCGGGTGGAGATATAGGCTTTGGGATTGCT 840
Query 967 TCATTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAAAATGATGAA 1026
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TCTTTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAGAATGATGAA 900
Query 1027 GAGTGTCGAGAAGAA-GTGGAGAACAGTAATTCTCAAGGTAAAAGAGGAGATC 1078
|| |||||||| || || |||||||||||||||||||||||| |||| ||||
Sbjct 901 GAATGTCGAGAC-AACGTAGAGAACAGTAATTCTCAAGGTAAAGGAGGGGATC 952
Score = 636 bits (344), Expect = 0.0
Identities = 456/508 (90%), Gaps = 15/508 (3%)
Strand=Plus/Plus
Query 2372 ACAACTTCGATGAGGTTCCAGAGAATAGTCGAGAAAAATCAA-GCATGGAGAAGGTCCCC 2430
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 2477 ACAACTTCGATGAGGTTCCAGTGAATAGTCGAGAAAAATCAATG-ATGGAGAAGGTCCCC 2535
Query 2431 ACCCCAGCACCCACCGCAAGGGTGTTTGATGTCCCATCTCTCACTGATTCTGGAGTAAAT 2490
|| ||| ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2536 ACACCATCACCCGCTGCAAGGGTATTTGATGTCCCATCTCTCACTGAATCTGGAGTAAAT 2595
Query 2491 TTATCGGCAAACAATGAAATGAATGACATTGAAGATCACAATGGGTTAAACATAGAAATG 2550
| |||||| |||||||||| || | | ||||||||||||||||| |||||||||
Sbjct 2596 CTCTCGGCAGACAATGAAAT---TG--A--G--GATCACAATGGGTTAAAAATAGAAATG 2646
Query 2551 GTAGCAGAAATGGAATCGTATGCAAGCCACCCTGGCTTAAAAGTGGGAGAGAATGAACCT 2610
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2647 GTACCAGAAATGGAATCGCATGCAAGCCACTCTGGCTTAAAAGTGGGAGAGAATGAACCT 2706
Query 2611 ACAGAGTCAAATACATTCACTGGCCATATAGATGCATTGACAAAGAGACCTCAACATGAA 2670
||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 2707 ACAGAGTCAAATACATTCACTGGCCATATAGATGCGTTGAAAAAGAGATCTCAACATGAA 2766
Query 2671 ACATCCTCTGAAAAAGCTGTTCCCCCAATTAAAAGAGATGTAACATGTACAGAAGCAGAT 2730
||||||| | |||||| |||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 2767 ACATCCTTTCAAAAAGGTGTTCCCCCAGTTAAAAGAGATGTAACTTGTACAGAAACAGAT 2826
Query 2731 GAATGTCATGATCTAGAGAGCCCGATTCAAGA-ATTTTTCTGCTCTAGTTCCCCCATGGG 2789
|| | |||||||| | ||||| | ||||| || ||||||||||||||||||| |||||||
Sbjct 2827 GAGTCTCATGATCCAAAGAGCTCTATTCA-GATATTTTTCTGCTCTAGTTCCTCCATGGG 2885
Query 2790 GGGTTCCATGCGGCAGAATAAGCGGAGAAGAATCCTGGAAAAACCAACTAGAAGAGAGCT 2849
|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 2886 GGGTTCCAGGCGGCAGAATAAGCGGAGAAGAACCCTGGAAAAACCAACTAGTAGAGTGCT 2945
Query 2850 TTCGTCAAGTCCAGGGG-GAGACATTCT 2876
|||||| || ||||||| || | |||||
Sbjct 2946 TTCGTCTAGCCCAGGGGTGAAA-ATTCT 2972
Score = 244 bits (132), Expect = 4e-63
Identities = 172/191 (90%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 2866 GGAGACATTCTCGAGTC-AGATTATGTTAGGGA-AGCAGTACATCATAGGGAGGAAGCCG 2923
||||||||||||||| | ||||| |||| |||| | |||||||||||| ||| |||||||
Sbjct 3034 GGAGACATTCTCGAG-CTAGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091
Query 2924 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 2983
||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151
Query 2984 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3043
|| |||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||
Sbjct 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211
Query 3044 GATTTGAAGAG 3054
|||||||||||
Sbjct 3212 GATTTGAAGAG 3222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 207566003142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5