BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55830.1
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495664 jgi|Araly1|495664|fgenesh2_kg.8__1480__AT5G55830.1 3271 0.0
> Ahg495664 jgi|Araly1|495664|fgenesh2_kg.8__1480__AT5G55830.1
Length=2043
Score = 3271 bits (1771), Expect = 0.0
Identities = 1957/2048 (96%), Gaps = 7/2048 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTATCAAGAAAGCTTCTTGTTATCTTCTTCACATGGATAACAGCTCTATCCATG 60
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTTTCAAGAAAGCTTCTTGTTCTCTTCTTCACATGGATAACAGCTCTATCCATG 60
Query 61 TCGAAACCAATCTTCGTATCATCCGATAACATGAATTTCACATTCAAATCCTTCACAATC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GCGAAACCAATCTTCGTATCATCCGATAACGTGAATTTCACATTCAAATCCTTCACGATT 120
Query 121 CGTAACCTCACATTCCTCGGAGATTCACATCTCCGAAACGGTGTCGTTGGGCTCACAAGA 180
||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |||
Sbjct 121 CGTAACCTCACCTTCCTCGGCGATTCACATCTCCGAAACGGCGTCGTTGGTCTCACGAGA 180
Query 181 GAGCTAGGTGTTCCCGATACAAGCTCCGGTACAGTAATCTACAACAATCCGATCCGTTTC 240
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 181 GAGCTTGGTGTTCCCGATACAAGCTCCGGTACAGTAATCTACAACACTCCGATCCTTTTT 240
Query 241 TACGATCCGGATTCAAACACCACGGCGTCTTTCTCCACTCACTTCTCCTTCACCGTTCAA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TACGATCCTGATTCAAACACCACGGCGTCTTTCTCCACTCACTTCTCCTTCTCCGTTCAA 300
Query 301 AACTTAAACCCAGATCCAACCTCCGCCGGTGACGGACTCGCTTTCTTCCTCTCTCACGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AACTTAAACCCAGATCCAACCTCCGCCGGTGACGGACTCGCTTTCTTCCTCTCTCATGAC 360
Query 361 AACGATACTTTAGGAAGTCCCGGTGGTTACTTAGGTCTCGTCAATTCCTCTCAGCCGATG 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AACGATACTTTAGGAAGTCCCGGTGGTTACTTAGGTCTCGTCAATTCATCTCAGCCGATG 420
Query 421 AAGAATCGATTCGTCGCTATCGAATTCGATACGAAATTGGATCCTCATTTCAACGATCCA 480
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 421 AAGAATCGATTCGTCGCTATCGAATTCGATACTAAATTGGATCCACATTTCAACGATCCA 480
Query 481 AATGGTAATCACATTGGTTTAGATGTTGATAGTTTGAACTCAATCTCAACTTCAGATCCT 540
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 AGTGGTAATCACATTGGTTTAGATGTTGATAGTTTGAACTCAATCGCAACTTCAGATCCT 540
Query 541 TTGCTTTCGTCTCAGATTGATCTCAAATCTGGTAAATCGATAACTTCTTGGATCGATTAC 600
| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 541 TCGAATTCGTCTCAGATTGATCTTAAATCTGGTAAATCGATCACTTCTTGGATCGATTAC 600
Query 601 AAGAACGATTTACGTTTATTGAACGTGTTCTTGAGTTATACAGATCCAGTCACTA-CAAC 659
||||||||||||||||||||||| |||||||||||||||||||||||| || | | | ||
Sbjct 601 AAGAACGATTTACGTTTATTGAATGTGTTCTTGAGTTATACAGATCCAATCGCAATC-AC 659
Query 660 GAAGAAGCCAGAGAAGCCTCTTTTATCGGTTAACATCGATCTTTCTCCGTTCTTGAACGG 719
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 660 GAAGAAGCCAGAGAAGCCTCTTTTATCAGTGAAGATCGATCTTTCTCCGTTCTTGAACGG 719
Query 720 TGAAATGTATGTAGGATTCTCAGGTTCAACAGAAGGAAGCACAGAGATTCATCTGATCGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGAAATGTATGTAGGATTCTCAGGTTCAACAGAAGGAAGCACAGAGATTCATCTGATTGA 779
Query 780 GAATTGGAGTTTCAAGACTTCTGGATTTCTTCCGGTGAGATCGAAATCTAATCATCTTCA 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GAATTGGAGTTTCAAGACTTCTGGGTTTCTTCCGGTGAGATCGAAATCTAATCATCTTCA 839
Query 840 CAATGTTTCAGATAGTTCTGTGGTGAATGATGATCCTGTTG-TGATACCGAGTAAGAAGC 898
||| |||||||||||||| | ||||||||||||||||| | | ||||||||||||||||
Sbjct 840 CAACGTTTCAGATAGTTC--T-GTGAATGATGATCCTGTGGCT-ATACCGAGTAAGAAGC 895
Query 899 GGAGGCATCGACACAATCTTGCTATTGGACTTGGTATTTCTTGTCCGGTGTTAATCTGTT 958
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 896 GGAAGCATCGACACAATCTTGCTATTGGACTTGGTATTTCTTGTCCGGTGTTCTTCTGTT 955
Query 959 TAGCTCTCTTTGTGTTTGGGTACTTTACTTTGAAGAAATGGAAAAGTGTGAAAGCAGAGA 1018
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 956 TAGCTCTCTTGGTGTTTGGGTACTTCACTTTTAAGAAATGGAAAAGTGTGAAAGCAGAGA 1015
Query 1019 AGGAGCTTAAGACTGAGCTAATCACTGGTTTAAGAGAGTTTAGCTATAAAGAGCTTTACA 1078
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1016 AGGAGCTTAAGACTGAGCTTATCACAGGTTTAAGAGAGTTCAGCTATAAAGAGCTTTACA 1075
Query 1079 CAGCTACTAAAGGGTTTCATTCAAGTAGAGTCATTGGAAGAGGAGCGTTTGGGAATGTTT 1138
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1076 CAGCTACAAAAGGGTTTCATTCGAGTAGAGTCATTGGAAGAGGAGCGTTTGGGAATGTTT 1135
Query 1139 ACAGAGCTATGTTTGTTTCCTCTGGGACGATCTCTGCTGTGAAAAGATCGAGGCATAATT 1198
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 ACAGAGCAATGTTTGTTTCCTCTGGGACGATCTCTGCTGTGAAAAGATCGAGACATAATT 1195
Query 1199 CAACCGAAGGTAAAACAGAGTTTTTGGCAGAGTTATCGATTATTGCTTGCTTGCGGCACA 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 CAACCGAAGGTAAAACAGAGTTTTTGGCAGAGTTATCGATCATTGCTTGCTTGCGGCACA 1255
Query 1259 AGAATCTTGTTCAGTTGCAGGGTTGGTGTAACGAGAAAGGTGAATTGCTTCTTGTCTATG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGAATCTTGTTCAGTTGCAGGGTTGGTGTAACGAGAAAGGTGAATTGCTTCTTGTCTATG 1315
Query 1319 AGTTCATGCCTAATGGAAGTCTTGATAAGATTCTGTATCAAGAATCACAAACAGGAGCTG 1378
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1316 AGTTCATGCCTAATGGAAGTCTTGATAAGATTCTGTATCAAGAGTCAGAAACAGGAGCTG 1375
Query 1379 TGGCGCTTGACTGGTCTCATAGGCTGAATATAGCGATTGGTTTAGCATCAGCTTTGTCTT 1438
|||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1376 TGGCTCTTGACTGGTCACATAGGCTGAATATAGCGATTGGTTTGGCTTCAGCGTTGTCTT 1435
Query 1439 ATCTTCACCATGAGTGTGAGCAGCAAGTGGTTCACAGAGATATTAAGACGAGCAACATAA 1498
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1436 ATCTTCACCATGAATGTGAGCAGCAAGTGGTTCACAGAGATGTTAAGACGAGCAACATAA 1495
Query 1499 TGCTTGACATAAACTTCAACGCAAGGCTGGGAGATTTTGGTCTAGCTAGACTCACGGAGC 1558
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 1496 TGCTTGACATAAACTTCAACGCAAGGCTTGGCGATTTCGGTCTAGCTAGACTCACAGAGC 1555
Query 1559 ATGATAAGAGCCCTGTCTCAACTTTAACCGCTGGTACAATGGGTTACCTCGCACCAGAGT 1618
| |||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||
Sbjct 1556 ACGATAAGAGCCCTGTCTCAACCTTAACAGCTGGTACAATGGGTTATTTGGCACCAGAGT 1615
Query 1619 ATCTCCAATACGGCACAGCGACTGAGAAAACAGATGCTTTTAGCTACGGAGTGGTGATCC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ATCTCCAATACGGCACAGCGACTGAGAAAACAGATGCTTTTAGCTACGGAGTGGTGATTT 1675
Query 1679 TAGAAGTTGCTTGTGGGAGAAGGCCAATAGATAAAGAACCAGAGAGTCAAAAGACAGTGA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TAGAAGTTGCTTGTGGGAGAAGGCCAATAGATAAAGAACCAGAGAGTCAAAAGACAGTGA 1735
Query 1739 ATCTAGTGGATTGGGTTTGGAGATTGCACAGTGAAGGAAGAGTTCTTGAAGCTGTGGATG 1798
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ATCTGGTGGATTGGGTTTGGAGATTGCACAGTGAAGGAAGAGTTCTTGAAGCTGTGGATG 1795
Query 1799 AGAGATTGAAAGGTGAGTTTGATGAAGAAATGATGAAGAAACTTTTGCTTGTGGGTCTTA 1858
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1796 AGAGATTGAAAGGTGAGTTTGATGAAGAAATGATGAAGAAACTGTTGCTTGTGGGTCTTA 1855
Query 1859 AATGTGCCCATCCAGATAGTAATGAGAGACCATCTATGAGACGTGTTCTTCAGATACTTA 1918
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1856 AATGTGCTCATCCAGATAGTAATGAGAGACCATCTATGAGACGTGTACTTCAGATACTTA 1915
Query 1919 ACAATGAGATTGAGCCAAGTCCGGTTCCGAAGATGAAACCTACATTGTCTTTCTCTTGTG 1978
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1916 ACAACGAGGTTGAGCCAAGTCCGGTTCCGAAGATGAAACCTACACTGTCTTTCTCTTGTG 1975
Query 1979 GGTTAAGTCTTGATGACATTGTTTCGGAAGATGAAGAAGGAGACAGCATCGTGTACGTTG 2038
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1976 GGTTAAGTCTTGATGATATTGTTTCTGAAGATGAAGAAGGAGACAGCATCGTATACGTTG 2035
Query 2039 TATCTTAG 2046
||||||||
Sbjct 2036 TATCTTAG 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5