BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55856.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value Ahg950240 jgi|Araly1|950240|scaffold_802127.1 399 4e-111 > Ahg950240 jgi|Araly1|950240|scaffold_802127.1 Length=437 Score = 399 bits (216), Expect = 4e-111 Identities = 271/295 (92%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 1 ATGTCGTCGTCTGACAAGAAACCGTTGATTCCGTCGTCACATATCACCGTCAAAGTTAAA 60 |||||| ||||||||||||||||||||||||||||||||| || | || ||| Sbjct 136 ATGTCGACGTCTGACAAGAAACCGTTGATTCCGTCGTCAC--AT-A---TC------AAA 183 Query 61 AATCAGGACGACATATGTGTGTACTTCCGGATTAAGAGGGACGTCGAGCTTCGTAAGATG 120 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 184 AATCAGGATGACATATGTGTGTACTTCCGGATTAAGAGGGACGTTGAGCTTCGTAAGATG 243 Query 121 ATGCATGCATACTCTGAC-AAAGTTGGAGTAGAAATGTCTACTCTAAGGTTTCTCTTCGA 179 ||||||||||| || | | |||||||||||||||||||||||||||||||| |||||||| Sbjct 244 ATGCATGCATATTCCG-CAAAAGTTGGAGTAGAAATGTCTACTCTAAGGTTCCTCTTCGA 302 Query 180 TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAAGACGAAGACGA 239 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 303 TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAGGATGAAGACGA 362 Query 240 AATAGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCGCCATTAA 294 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 363 AATCGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCACCATTAA 417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10302009030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5