BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55856.1

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950240 jgi|Araly1|950240|scaffold_802127.1                        399    4e-111


> Ahg950240 jgi|Araly1|950240|scaffold_802127.1
Length=437

 Score =  399 bits (216),  Expect = 4e-111
 Identities = 271/295 (92%), Gaps = 14/295 (5%)
 Strand=Plus/Plus

Query  1    ATGTCGTCGTCTGACAAGAAACCGTTGATTCCGTCGTCACATATCACCGTCAAAGTTAAA  60
            |||||| |||||||||||||||||||||||||||||||||  || |   ||      |||
Sbjct  136  ATGTCGACGTCTGACAAGAAACCGTTGATTCCGTCGTCAC--AT-A---TC------AAA  183

Query  61   AATCAGGACGACATATGTGTGTACTTCCGGATTAAGAGGGACGTCGAGCTTCGTAAGATG  120
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  184  AATCAGGATGACATATGTGTGTACTTCCGGATTAAGAGGGACGTTGAGCTTCGTAAGATG  243

Query  121  ATGCATGCATACTCTGAC-AAAGTTGGAGTAGAAATGTCTACTCTAAGGTTTCTCTTCGA  179
            ||||||||||| || | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct  244  ATGCATGCATATTCCG-CAAAAGTTGGAGTAGAAATGTCTACTCTAAGGTTCCTCTTCGA  302

Query  180  TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAAGACGAAGACGA  239
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  303  TGGAAATAGGATCAAACTCAATCAAACTCCCAACGAGCTTGGGCTTGAGGATGAAGACGA  362

Query  240  AATAGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCGCCATTAA  294
            ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  363  AATCGAAGCATTTGGTGAACAACTAGGAGGGTTCAGCTTCTTTCATCACCATTAA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10302009030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5