BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55860.1
Length=2469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495668 jgi|Araly1|495668|fgenesh2_kg.8__1484__AT5G55860.1 3500 0.0
Ahg359442 jgi|Araly1|359442|fgenesh1_pg.C_scaffold_236000001 440 2e-122
> Ahg495668 jgi|Araly1|495668|fgenesh2_kg.8__1484__AT5G55860.1
Length=2205
Score = 3500 bits (1895), Expect = 0.0
Identities = 2107/2210 (95%), Gaps = 11/2210 (0%)
Strand=Plus/Plus
Query 255 CTTGATTTTATAGTCTATATAAAGAAAGAAAATGCAAAATGGTTGCTAAGAAGGGACGTA 314
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CTTGATTTTATAGTCTATATAAAGAAAG-AAATGCAAAATGGTTGCTAAGAAGGGACGTA 59
Query 315 GAGATTCTTCAGACTCTTCTCCAATTGTGGAGGTTGGAGAGATTGACACAAGTGCTCCTT 374
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGATTCTTCAGACTCTTCTCCGATTGTGGAGGTTGGAGAGATTGACACAAGTGCTCCTT 119
Query 375 TTCAATCTGTTAAAGATGCGGTTAACCTTTTCGGTGAAGCTGCTTTCTCCGCTGAGAAAC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCAATCTGTTAAAGATGCGGTTAACCTTTTCGGTGAAGCTGCTTTCTCCGCTGAGAAAC 179
Query 435 CGGTTTTTCGAAAACCGAATCCTCAGTCTGCTGAGAAAGTTTTGGTGAAGCAAACAGAGC 494
|||| |||| ||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 180 CGGTCATTCGGAAACCGAGTCCTCAATCCGCTGAGAAAGTTTTGGTGAAGCAAACAGAGC 239
Query 495 TTCACTTGGCTCAGAAAGAGTTGAATAAGTTGAAGGAACAGCTTAAGAATGCTGAAACTA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 TTCACTTGGCTCAGAAAGAGTTGAATAAGTTGAAGGAACAGCTTAAGAATGCTGAGACTG 299
Query 555 TTAGAGAGCAAGCGTTGAGTGAGCTTGAATGGTCTAAAAGAACTGTTGATGAACTTACTC 614
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 300 TTAGAGAGCAAGCGTTGAGTGAGCTTGAATGGGCTAAAAGAACGGTTGATGAACTTACTC 359
Query 615 GTAAGCTTGAAGCGGTTAATGAGTCTAGAGATTCTGCAAATAAAGCTACTGAAGCTGCTA 674
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 360 GTAAGCTTGAAGCGGTTAATGAGTCGAGAGATTCTGCAAATAAAGCGACTGAAGCTGCTA 419
Query 675 AGAGTCTAATTGAAGAAGCGAAACCGGGGAATGTTTCTGTAGC---TAGTAGTAGTGATG 731
|||||| ||| | ||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 420 AGAGTCAAATCGGAGAAGCGAAACCGGGAAATGTTTCTGTGGCTAGTAGTAGTAGTGATG 479
Query 732 CTCAGACTCGGGATATGGAAGAGTATGGGGAAGTATGTAAGGAACTTGATACCGCCAAGC 791
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 480 CTCAGACTCGGGATATGGAAGAGTATGGGGAGGTATGTAAGGACCTTGATACCGCGAAGC 539
Query 792 AAGAGCTGAGGAAAATCCGTCAGGTTTCGAATGAGATTTTGGAAACAAAGACTGTTGCTT 851
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGAGCTGAGAAAAATCCGTCAGGTTTCGAATGAGATTTTGGAAACAAAGACTGTTGCTT 599
Query 852 TAAGTAAAGTAGAGGAAGCTAAGAAAGTGAGTAAAGTTCATTCTGAGAAGATTGAGTTGC 911
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAGTAAAGTAGAGGAAGCTAAGGAAGTGAGTAAAGTTCATTCTGAGAAGATTGAGTTGC 659
Query 912 TTAGAAAAGAAATTGCAGCTGTTAATGAATCAGTTGAACAGACGAAGCTTGCGTGTTCTC 971
||||||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 660 TTAGAAAAGAAATCGCAACTGTTAATGAATCAGTGGAACAAACGAAGCTTGCATGTTCTC 719
Query 972 AAGCCCGAAAGGAACAATCTGAGATATTTGCGGAGAAGGAGATTCAGCAGAAATCGTATA 1031
|||| ||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 720 AAGCTCGAAAAGAACAATCTGAGATATTTGCAGAGAAAGAGATTCAGCAGCAATCGTATA 779
Query 1032 AAGCTGGCATGGAAGAATCTGCCAAGAAATCACTTGCTTTGAAGAATGAATTTGACCCTG 1091
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 780 AAGCTGGCATGGAAGAATCTGCCAAGAAATCACTTGCTTTGAAGAACGAGTTTGACCCCG 839
Query 1092 AATTTGCAAAGAAGCTTGAAGTGCAGTTGACTGAGACATATAATGAGATCGATGAACTGC 1151
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 840 AGTTTGCAAAAAAGCTTGAAGTGCAGTTGACTGAGACGTATAATGAGATCGATGAGCTGC 899
Query 1152 AGAAGCAAATGGAGACTGCGAAAGCATCGGATATAGATTCCGTAAATGGTGTGAGTTTGG 1211
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||
Sbjct 900 AGAAGCAAATGGAGACTGCGAAAGCATCAGATATGGATTCCGTTAATGGTGTGAGTCTGG 959
Query 1212 AGTTGAATGAAGCTAAAGGTTTATTCGAGAAACTTGTGGAAGAAGAGAAGTCTTTGCAAG 1271
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AGTTGAATGAAGCTAAGGGTTTACTCGAGAAACTTGTGGAAGAAGAGAAGTCTTTGCAAG 1019
Query 1272 AGTTAGTGGAATCTCTTAAAGCAGAATTAAAGAATGTGAAGATGGAGCATGATGAAGTTG 1331
|||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||
Sbjct 1020 AGTTAGTGGAATCTCTTAAAGCAGAATTGAAGAATGTGAAGACAGAGCACGACGAAGTTG 1079
Query 1332 AAGCGAAGGAAGCTGAAATTGAATCTGTGGCTGGAGATCTTCATCTGAAGCTTAGCAGAA 1391
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 AAGCGAAGGAGGCTGAAATTGAATCTGTGGCTGGAGATCTTCATTTGAAGCTTAGCAGAA 1139
Query 1392 GTAAGAGTGAGCTAGAACAATGTGTTACAGAGGAATCTAAAGCAAAGGCTGCTTTGGAAG 1451
|||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 GTAAGAATGAGCTAGAAGAATGTGTTGCAGAGGAATCTAAAGCAAAGGCTGCTTTGGAAG 1199
Query 1452 ATATGATGTTAACCATCAATCAGATATCTTCTGAGACTGAAGCTGCTCGACGA-GAAGCT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1200 ATATGATGTTAACCATCAATCAGATATCTTCTGAGACTGAAGCTGCTCGAC-ACGAAGCT 1258
Query 1511 GAGGGAATGAGAAACAAAGCTAAGGAGTTAATGAAGGAAGCAGAATCTGCGCATCTGGCT 1570
|||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 1259 GAGGAAATGAGAAACAAAGCTGGGGAGTTAATGAAGGAAGCGGAAACTGCGCATCTGGCT 1318
Query 1571 CTTGAAGACTCAGAGCTACATCTAAGGGTCGCGTTAGATGAAGCCGAAGAAGCGAAAGCT 1630
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1319 CTTGAAGACTCAGAGCTACATCTAAGGGTCGCTTTAGATGAAGCCGAAGAAGCGAAAGCT 1378
Query 1631 GCCGAGACAAAGGCGCTTGAACAGATAAAGTCAATGTCTGAAAAAACCAACGCTGCACGT 1690
|| ||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 1379 GCGGAGACAAAGGCACTTGAACAAATAAAGTCAATGTCTGTGAAAACCAACGCTGCGCGT 1438
Query 1691 AATTCGACTTCATCTGAGTCTGGATCTCAGAGCATCACACTGTCTCAAGAGGAGTTCAAA 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AATTCGACTTCATCTGAGTCTGGATCTCAGAGCATCACACTGTCTCAAGAGGAGTTCAAA 1498
Query 1751 TCACTGAGCAAGAGAGCTGAGGTATTCGATAAGCTAGCAGAAATGAAAGTGGCTGCTGCA 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TCACTGAGCAAGAGAGCTGAGGTATTCGATAAGCTAGCAGAAATGAAAGTGGCTGCTGCA 1558
Query 1811 TTGGCTCAGGTGGAAGCAGTGAGAGCTAGCGAAAACGAGACACTGAAGAAGTTAGAGACA 1870
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1559 TTGGCACAGGTGGAAGCAGTGAGAGCTAGCGAAAACGAGACATTGAAGAAGTTAGAGACA 1618
Query 1871 ACACAAGAAGAGATTAAGAAGCTAAAGACTGCAACAGAAGAGGCACTGAAGAAAGCAGCT 1930
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1619 ACACAAGAGGAGATTAAGAAGCTAAAGAGTGCAACAGAAGAGGCACTGAAGAAAGCAGCT 1678
Query 1931 ATGGCTGATGCTGCCAAGAAAGCGGTTGAAGGAGAACTCAGGAGATGGCGAGAAAGAGAT 1990
||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1679 ATGGCCGATGCTGCTAAGAAAGCTGTTGAAGGAGAACTCAGGAGATGGCGCGAAAGAGAT 1738
Query 1991 CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTCGCAGAAGCTGAGATGAAGATGGCC 2050
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1739 CAGAAGAAAGCAGAGGAAGCGGCAACAAGGATTCTAGCAGAAGCTGAGATGAAGATTGCC 1798
Query 2051 AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAAACCTGTCAATAACAAA 2110
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1799 AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAGACCTGTCAATAACAAA 1858
Query 2111 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTATGCCGAATCTAAGTGGA 2170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1859 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTTTGCCGAATCTAAGTGGA 1918
Query 2171 ATCTTCAACAGAAAGAAGAATCAAGTGGAATGGGGTTCTCCTTCATATCTCCCTGGAGAG 2230
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 ATCTTCAATAGAAAGAAAAATCAAGTGGAATGGGGTTCTCCTTCATATCTCCCTGGAGAG 1978
Query 2231 AAACCCTTTTGATGATTTCTTCTTTTT-CGAGAATTGAACTTTTTGTTTGTTGTGAACAA 2289
||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 1979 AAACCCTTTTGATGATTTCTTCTTTTTTCAAGAATTGAACTTTTTGTT-GTTGTGAACAA 2037
Query 2290 TCCAGAAAGTTGTGTGCtttttttGGTAAAAGAAGGTTTGTGGTTTGAGATCAGAAGCAG 2349
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2038 TCCAGAAAGTTGTGTGCTTTTTT-GCTAAAAGAAGGTTTGTGGTTTGAGATCAGAAGCAG 2096
Query 2350 TTGCAGCTTTGGTCTAACGTGAGAAAACTGGTTG-TTGCTGTAAATTGGATCAAAGCTAT 2408
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2097 TTGCAGCTTTGGTCTAACGTGAGAAA-CTGGTTTATTGCTGTAAATTGGATCAAAGCTAT 2155
Query 2409 TTAGGTGGTTGTTTTACTTTGGCTCTTTGTTATGATTGTGAATGCTATTT 2458
||||||||| |||||| |||||| |||| || ||||||||||| ||||||
Sbjct 2156 TTAGGTGGTGGTTTTATTTTGGCCCTTTCTTGTGATTGTGAATACTATTT 2205
> Ahg359442 jgi|Araly1|359442|fgenesh1_pg.C_scaffold_236000001
Length=393
Score = 440 bits (238), Expect = 2e-122
Identities = 262/274 (96%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 1931 ATGGCTGATGCTGCCAAGAAAGCGGTTGAAGGAGAACTCAGGAGATGGCGAGAAAGAGAT 1990
||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCCGATGCTGCTAAGAAAGCTGTTGAAGGAGAACTCAGGAGATGGCGCGAAAGAGAT 60
Query 1991 CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTCGCAGAAGCTGAGATGAAGATGGCC 2050
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 CAGAAGAAAGCAGAGGAAGCGGCGACAAGGATTCTAGCAGAAGCTGAGATGAAGATTGCC 120
Query 2051 AGTGAATCATCACCGCAACAACATTACAAAGCTCCGAAACAGAAACCTGTCAATAACAAA 2110
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 121 AGTGAATCATCACCGCAAAAACATTACAAAGCTCCGAAACAGAGACCTGTCCATAACAAA 180
Query 2111 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTATGCCGAATCTAAGTGGA 2170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CTGGAGAAGACAAAAACATCTGTGGTATCAAAGAAAGTGCTTTTGCCGAATCTAAGTGGA 240
Query 2171 ATCTTCAACAGAAAGAAGAATCAAGTGGAATGGG 2204
|||||||| |||||||| ||||||||||||||||
Sbjct 241 ATCTTCAATAGAAAGAAAAATCAAGTGGAATGGG 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93054468535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5