BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55900.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495672 jgi|Araly1|495672|fgenesh2_kg.8__1488__AT5G55900.1 2176 0.0
Ahg492146 jgi|Araly1|492146|fgenesh2_kg.7__1579__AT4G26620.1 752 0.0
> Ahg495672 jgi|Araly1|495672|fgenesh2_kg.8__1488__AT5G55900.1
Length=1450
Score = 2176 bits (1178), Expect = 0.0
Identities = 1368/1459 (94%), Gaps = 16/1459 (1%)
Strand=Plus/Plus
Query 6 tcttcttcttcttcctcttctcAAAAACTTTCAGTTTCGATCTCTCCTAAAAAGTTTGAA 65
||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1 TCTGCTTCTTCTTCCTCTTCTC-AGAACTTTCAGTTTCGA--TCTCCTAAAAAGTTTGAA 57
Query 66 CTTTCCGTCGAATCAAATGGGAAGCGGAAGATATCTAGACGACCCTTTAACATTTACTAG 125
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 58 CTTTTCGTCGAATCAAATGGGAAGCGGAAGATATTTAGACGACCCTTTAACATTTACTAG 117
Query 126 AAACCCACCTTCCTCGTCGTCTCCAATCACCGAATCTAGCTTTCTC-GCAGAATCGATCT 184
||||||||| |||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 118 AAACCCACCATCCTCGTCTTCTCCAATCACCGAATCTAGCTTTCTCGGC-GAATCGATCT 176
Query 185 CTCGCTCTGGTAGCTTCGAGAGTGGGAGCTTACGAGGAGGCGATGGTGATTGCTTTAGCG 244
|||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 177 CTCGCTCTGGAAGCTTTGAGAGTGAGAGCTTACGAGGAGGCGATGGTGATAGCTTTAGCG 236
Query 245 ACGTC-GATTTCGCACTTGATAAACTCGCTGGGACTGTACAGTTCTACGAGAGGCATGTC 303
||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 237 ACG-CAGATTTCGCACTTGAGAAACTCGCTGGTACTGTACAGTTCTACGAGAGGCATGTC 295
Query 304 TTCTTGTGCTACAAAAAACCATCCGTTTGGCCTGCGAGGATCGAAGCTTCTGAGTTTGAT 363
||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||
Sbjct 296 TTCTTGTGCTACAAAAAGCCCTCCGTTTGGCCCGCGAGGATCGAAGCGTCGGAGTTTGAT 355
Query 364 CGGTTACCGAGGCTTCTCTCCTCCGTTATATCGGCGAGGAAGAGTAGTATGAAGAAAGAG 423
||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 356 CGGCTACCGAGGCTTCTCTCTTCCGTTATATCGGCCAGGAAGAGTAGTATGACGAAAGAG 415
Query 424 ACTTTACTCACAATATGTGAGGGACATGATGGTTCAGAGACATCAAATGGGGATGTTCTG 483
||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 416 ACTCTACTCACAATATGTGAGGGACATGATGGAACAGAGACATCAAATGGGGATTTTCTG 475
Query 484 ATATTTCCAGATATGATCAGATACAGAAGGTTGACTCATTTTGATGTGGACACATTTGTT 543
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 476 ATATTTCCAGATATGATCAGATACAGAAGGCTGACTCATTTTGATGTCGACACATTTGTT 535
Query 544 GAGGAGGTGCTTGTGAAGGGTGTTGAGTGGTTGCCTGGAAATCCTGAATCTCTT-AGTAG 602
|| |||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 536 GAAGAGGTGCTTGTGAAGGATGTTGAGTGGTTGCCTGGAAATCCTGAATCT-TTAAGTGG 594
Query 603 TTCATATGTCTTTGTATGTTGTCATGGATCTCGAGACCGGCGATGTGGGGTTTGTGGACC 662
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 595 TTCGTATGTCTTTGTATGTTGTCATGGTTCCCGAGACCGGCGATGTGGGGTTTGTGGACC 654
Query 663 TTCTCTAGTTAGTCGATTCAGAGAAGAAATTGACTCGTGTGGTCTTCGAGGTGAAGTTTC 722
||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 655 TTCGCTGGTTAGTCGATTCAGAGAAGAAATTGAATTTTGTGGTCTTCGAGGTGAAGTTTC 714
Query 723 AGTCAGCCCTTGTTCTCACATTGGTGGTCACAAATACACTGGAGATGTTATCATCTATGG 782
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 GGTCAGCCCTTGTTCTCACATTGGTGATCACAAATACACTGGAGATGTTATCATCTATGG 774
Query 783 ATTAAATATCAACCAGAGAGTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGT 842
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATTAAACATCAACCAGAGAGTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGT 834
Query 843 -TCCTCTTTTGTTGGAGCAACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGG 901
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AT-CTCTTTTGTTGGAGCAACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGG 893
Query 902 GTGAAATGGGTCTGCCAGAAGAAGATCAGAAGAAAACTCAAGAACAAAGGTTACAATTAA 961
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 GTGAAATGGGTCTACCAGAAGAAGATCAGAAGAAAACTCAAGAACAAAGGTTACTATTAA 953
Query 962 ACAGCGAAAAGATCAGCAACAGAGAGGTGACTCAAGAATCAGTTAATAATAGTATCTGTT 1021
|||| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 954 ACAGTGAAAAGATCAGCAACAGAGAGGTGACTCAAGAATCATTTAATAATGGTATTTGTT 1013
Query 1022 GCCAGTCTCGAGCTGTCCCAGAGCTGAACGGTAGTGGTTGCCAACAAAATGGGAACTCCT 1081
||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1014 GCCAGTCTCGAGCTGTCCCAGAGCTTAACGGTAGTTGTTGCCGACAAAATGGGAACTCCT 1073
Query 1082 CTTACTGTCTGGAGGAGATTCACACAGAGAAAAATACCTCGGAGAGAGTAACCTCTGTAA 1141
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1074 CTTACTGTCTGGAGGAGAATCACACAGAGAAAAATACCTCGGAAAGAGTAACCTCTGTAA 1133
Query 1142 AAAATGCATCTCTTCGGATAGGAAGCAGCGAGAATGGATCTTCTGGTGGATTCAAGGTTT 1201
|||| ||||||||||||||| | |||||||| |||||||||||| |||||||||||| ||
Sbjct 1134 AAAAAGCATCTCTTCGGATAAGTAGCAGCGAAAATGGATCTTCTTGTGGATTCAAGGCTT 1193
Query 1202 GTGCGGTGATGTCAATGTGGTTGGAGACTTGGGAGAGAGAAGATACATATGCTGCTTTAG 1261
|||| | |||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 1194 GTGCTGCGATGTCAATGTGGTTGGAGAGTTGGGAGAAAGAGGATACATATGCTGCTTTAG 1253
Query 1262 CTGTTGCTTGTGCTGCTGCATCTGTGGCTATTGCTTATAACTGCTATAAACAATTGAAAT 1321
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CCGTTGCTTGTGCTGCTGCATCTGTGGCTATTGCTTATAACTGCTATAAACAATTGAAAT 1313
Query 1322 GAAGCTATGTGTTTTATAT-T-TAGCTTCTATGCAATGGTAATTATCTCAGTCTTTAGAT 1379
||||| ||||||||| ||| | |||||||||| ||||||||||||||||||| ||||||
Sbjct 1314 GAAGCAATGTGTTTT-TATGTCTAGCTTCTATCCAATGGTAATTATCTCAGTATTTAGAC 1372
Query 1380 TAG-TTGTTTCCTCTTCGTCTGTACAGAGTTAGAAGAGGGTTTTAACTCTTAAGTAAGAA 1438
||| || ||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1373 TAGATT-TTTCCTCTTCGTCTGTATAGAGTTAGAAGAGGGTTTTAACTTTTCTGTAAGAA 1431
Query 1439 CTGCTTGTTGATAACATAT 1457
| | |||||||||| ||||
Sbjct 1432 CGGTTTGTTGATAATATAT 1450
> Ahg492146 jgi|Araly1|492146|fgenesh2_kg.7__1579__AT4G26620.1
Length=1500
Score = 752 bits (407), Expect = 0.0
Identities = 595/686 (87%), Gaps = 12/686 (2%)
Strand=Plus/Plus
Query 266 AACTCGCTGGGACTGTACAGTTCTACGAGAGGCATGTCTTCTTGTGCTACAAAAAACCAT 325
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 276 AACTCGCTGGGACCGTACAGTTTTACGAGAGGCATGTCTTCTTGTGCTACAAAAAGCCAT 335
Query 326 CCGTTTGGCCTGCGAGGATCGAAGCTTCTGAGTTTGATCGGTTACCGAGGCTTCTCTCCT 385
| |||||||| || |||||||| ||| ||||||| ||||| || || ||||| ||||| |
Sbjct 336 CTGTTTGGCCCGCAAGGATCGAGGCTGCTGAGTTCGATCGATTGCCTAGGCTACTCTC-T 394
Query 386 CCGT-TATATCGGCGAGGAAGAGTAGTATGAAGAAAGAGACTTTACTCACAATATGTGAG 444
|| | ||||||| ||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 395 GCGGCTGTATCGGCCAGGAAGAGTAGCATGAAGAAGGAGACTCGACTCACAATATGTGAG 454
Query 445 GGACATGATGGTTCAGAGACATCAAATGGGGATGTTCTGATATTTCCAGATATGATCAGA 504
|| |||||||| |||||||||| ||||| ||||| || || ||||| ||||||||||||
Sbjct 455 GGCCATGATGGGACAGAGACATCCAATGGTGATGTACTTATTTTTCCTGATATGATCAGA 514
Query 505 TACAGAAGGTTGACTCATTTTGATGTGGACACATTTGTTGAGGAGGTGCTTGTGAAGGGT 564
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 515 TACAGAAGATTGACTCATTTTGATGTGGACACATTTGTGGAAGAGGTGCTTGTGAAGGAT 574
Query 565 GTTGAGTGGTTGCCTGGAAATCCTGAATCT-CTTAGTAGT-TCATATGTCTTTGTATGTT 622
| ||| ||| |||||||||||||||||| | || | || |||||||||||||||||||
Sbjct 575 GGTGAATGGCTGCCTGGAAATCCTGAAT-TGCTGAA-AGGCTCATATGTCTTTGTATGTT 632
Query 623 GTCATGGATCTCGAGACCGGCGATGTGGGGTTTGTGGACCTTCTCTAGTTAGTCGATTCA 682
|||||||| |||||||||||||||||||||||||| || || ||||||||| ||||||
Sbjct 633 CCCATGGATCCCGAGACCGGCGATGTGGGGTTTGTGGGCCGTCGCTAGTTAGTAGATTCA 692
Query 683 GAGAAGAAATTGACT-CGTGTGGTCTTCGAGGTGAAGTTTCAGTCAGCCCTTGTTCTCAC 741
|||||||| |||| | | |||||||| |||| |||| ||| | ||||| |||||||||
Sbjct 693 GAGAAGAACTTGAGTTCCA-TGGTCTTCAAGGTAAAGTGTCAATTAGCCCATGTTCTCAC 751
Query 742 ATTGGTGGTCACAAATACACTGGAGA-TGTTATCATCTATGGATTAAATATCAACCAGAG 800
|| ||||||||||||||| |||| || |||||||||||| ||| ||| |||||| || |
Sbjct 752 ATAGGTGGTCACAAATACGCTGG-GAATGTTATCATCTACAGATCAAACATCAAC-AGGG 809
Query 801 A-GTCACAGGACACTGGTATGGATGTGTGACTCTAGAGGATGTTCCTCTTTTGTTGGAGC 859
| |||||||||||||||||||| | |||||| | ||| ||||| ||| || | |||||||
Sbjct 810 AAGTCACAGGACACTGGTATGGGTATGTGACCCCAGAAGATGTACCTATTCTCTTGGAGC 869
Query 860 AACACATTAACAAAGGCGAAATTGTAGACCGGCTTTGGAGGGGTGAAATGGGTCTGCCAG 919
| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 870 AGCACATCAACAAAGGCGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAG 929
Query 920 AAGAAGATCAGAAGAAAACTCAAGAA 945
||||||||||||||||||||||||||
Sbjct 930 AAGAAGATCAGAAGAAAACTCAAGAA 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5