BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55910.1
Length=2065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1 3064 0.0
Ahg483612 jgi|Araly1|483612|fgenesh2_kg.4__2672__AT2G44830.1 204 3e-51
Ahg478629 jgi|Araly1|478629|fgenesh2_kg.3__1330__AT3G12690.1 165 1e-39
> Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1
Length=2055
Score = 3064 bits (1659), Expect = 0.0
Identities = 1950/2083 (94%), Gaps = 50/2083 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGACCCAATtctctctctctcttaacaacactctctcctctctctccctctctct 60
||||||||||||| ||||||||||||| | | || | |||||||| |||||||||
Sbjct 1 ATGGTAGACCCAA--CTCTCTCTCTCTT--C-TC-CTAAC-ACTCTCTCTTCCTCTCTCT 53
Query 61 ATCTATCCCCATTTCCATGGAAGCAAGCAGATGTGTTCTTAC-ATCTCTTTCTCTCTCTA 119
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 54 ATCTATCCCCATTTCCATGGAAGCAAGCAGATGTGTTCAT-CTATCTCTTTCTCTCTCTA 112
Query 120 CAGCCTTACATGAACAGTGACTGttctctctctttccctctccttccttttttcttctac 179
||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||
Sbjct 113 CAGCCTTACATGAACAGTGACTGTTCTCTCTCTCTCTCTCTCCTCCCTTTTTGCTTCTAC 172
Query 180 ttctccttccctttg---------c-t-tcG--AAAAGGGTATCTCGTGATCTTTATCGC 226
|||| |||||||||| | | ||| |||||||||||||||||||||||||||
Sbjct 173 TTCTTCTTCCCTTTGCTTAAATTTCATCTCGAAAAAAGGGTATCTCGTGATCTTTATCGC 232
Query 227 TCAAAAATCTTCACTTTCAGATCA-GGCCACTCGTTGATGGAATCTGTGACAGTATTGAT 285
| |||||||||||||||||| | | | | | | ||||||||||||| ||||||||||||
Sbjct 233 TTAAAAATCTTCACTTTCAGGTAACGACAAAT-TTTGATGGAATCTGCGACAGTATTGAT 291
Query 286 TACTAGAGAGTAAAGACAAGTTCTTTAAATCTCAGGGAAGAAGGAATTGGTGTTTAAGAT 345
|||| ||||| |||||||||||||||||||||||| ||||||||| | || | |
Sbjct 292 TACT--AGAGTCAAGACAAGTTCTTTAAATCTCAGGCAAGAAGGAA-T--TG-----G-T 340
Query 346 TGCTCTGTGTTAATGATGGCTTCAAAAACTCCAGAAGGATCACTTACCAATTCCAGTCAA 405
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 T--TCTAAG--AATGATGGCTTCAAAAACTCCAGAAGGATCACTTACCAATTCCAGTCAA 396
Query 406 AGTATGTCAATCAACACTTTAGCAGATCAAGTATCTTCGAGTTTGTCTTTCGCTGATCCA 465
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 397 AGTATGTCAATCAACACTTTAGCAGATCAAGTATCTTCGAGTTTGTCTTTCGCCGATCCA 456
Query 466 AGTAGTGATGGCAAAACCGGTAATAGTAAGATCAACGAGCAAGGTGAGAGTGGAAAGAGT 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGTAGTGATGGTAAAACCGGTAATAGTAAGATCAACGAGCAAGGTGAGAGTGGAAAGAGT 516
Query 526 AGCACTTGTAGACCAAGTACAAGCAGTGATATAAGCGATGAGAGCACTTGTAGCAGCTTT 585
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AGCACTTGTAGACCGAGCACAAGCAGTGATATAAGCGATGAGAGCACTTGTAGCAGCTTT 576
Query 586 AGTAGCAGTATCAACAAACCTCACAAGGCTAATGATGTGAGATGGGAAGCTATTCAAGCT 645
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 577 AGTAGCAGTATCAACAAACCTCACAAGGCTAATGATGTGAGATGGGAAGCCATTCAAGCT 636
Query 646 GTTAGAACTAAACATGGTGGTTTGGGTTTGAATCATTTTAGGCTCTTGAAGAGGTTAGGA 705
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GTTAGAACGAAACATGGTGGTTTGGGTTTGAATCATTTTAGGCTCTTGAAGAGGTTAGGA 696
Query 706 TGTGGAGATATTGGAACTGTTCATCTTGCTGAGTTGAATGGAACTA-GGTGTTATTTTGC 764
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 697 TGTGGAGATATTGGAACTGTTCATCTTGCTGAGTTAAATGGAAC-ACGGTGTTATTTTGC 755
Query 765 GATGAAGGTTATGGATAAAACTGCTTTGGCTAGCCGGAAAAAGCTTCTTAGGGCTCAAAC 824
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 756 GATGAAGGTTATGGATAAAACCGCTTTGGCTAGCCGGAAAAAGCTTCTTAGGGCTCAAAC 815
Query 825 TGAAAGAGAGATATTGCAGTGTCTTGATCACCCGTTTCTTCCGACTTTGTATAGTCATTT 884
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 816 TGAAAGAGAGATATTGCAGTGTCTTGATCACCCGTTTCTCCCGACATTGTATAGTCATTT 875
Query 885 TGAGACAGAGAAGTTCTCTTGTTTGGTGATGGAGTTTTGTCCTGGTGGTGATTTGCATAC 944
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CGAGACTGAGAAGTTCTCTTGTTTGGTGATGGAGTTTTGTCCTGGTGGTGATTTGCATAC 935
Query 945 ACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAGTTTTATGTCGC 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 936 ACTAAGGCAGAGACAACCCGGGAAACGCTTCACCGAGCAAGCAGCTAAGTTTTATGTAGC 995
Query 1005 GGAAGTGCTTCTTGCAATGGAATATTTACACATGCTTGGGATCATTTACCGTGATCTGAA 1064
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 996 AGAAGTGCTTCTTGCGATGGAATATCTACACATGCTTGGGATCATTTACCGTGATTTGAA 1055
Query 1065 ACCCGAGAACGTTCTTGTGAGAGATGATGGGCACGTGATGCTTTCGGATTTTGATCTCTC 1124
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1056 ACCCGAGAATGTTCTTGTGAGAGATGATGGACACGTGATGCTTTCGGATTTTGATCTCTC 1115
Query 1125 CCTGAGATGTACTGTGAGCCTCTCTATAGTCAGATCAGCTAATGTTGGATCCGAAGGCTT 1184
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1116 CCTGAGATGTACCGTGAGCCTCTCTATAGTCAGATCAGCCAATGTCGGATCTGAGGGCTT 1175
Query 1185 GTCGAAGAATTCGGTTTCTTGCTCGCAACAACCTGCATGCATCCAGCAACCATCTTGCAT 1244
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1176 GTCAAAGAATTCGGTTTCTTGCTCGCAACAACCTGCCTGCATCCAGCAACCATCTTGCAT 1235
Query 1245 CTCAATGGCTCCAACATCTTGCTTCGGTCCTCGGTTCTTCTCATCGAAATCCAAGAAAGA 1304
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1236 CTCAATGGCTCCAACATCTTGCTTCTCTCCTCGATTCTTCTCATCGAAATCCAAGAAAGA 1295
Query 1305 CAAGAAACCGAAAACCGAAAACGGGAACCACCAAGTAACTCCGTTACCAGAACTCGTTGC 1364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CAAGAAACCGAAAACCGAGAACGGGAACCACCAAGTAACTCCGTTACCAGAACTCGTTGC 1355
Query 1365 AGAGCCCACAGGCGCCCGTTCTATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCAGA 1424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AGAGCCCACAGGCGCCCGTTCGATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCAGA 1415
Query 1425 GATCATCAAAGGTGAAGGACATGGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTTTCT 1484
||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 1416 GATTATCAAAGGTGAAGGACATGGAAGCGCGGTTGATTGGTGGACTTTTGGGATCTTTCT 1475
Query 1485 TTATGAACTATTGTTTGGTAAAACACCGTTTAAAGGGTCAGGAAATCGAGCAACGCTCTT 1544
||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1476 TTATGAATTATTGTTTGGTAAAACACCGTTTAAAGGGTCTGGAAATCGAGCTACGCTCTT 1535
Query 1545 CAACGTGGTTGGTCAGCCTCTTAGATTCCCTGAATCTCCGGTTGTTAGCTTCGCAGCTAG 1604
||| ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 1536 CAATGTGGTTGGTCAGCCTCTGAGATTCCCGGAATCTCCAGTTGTTAGCTTTGCAGCTAG 1595
Query 1605 GGATTTGATAAGGAGTTTGCTTGTGAAGGAGCCACAACATAGATTAGCTTATAAGCGTGG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GGATTTGATAAGGAGTTTGCTTGTGAAGGAGCCACAACATAGATTAGCTTATAAGCGTGG 1655
Query 1665 AGCAACAGAGATAAAGCAACATCCTTTCTTTGAAGGAGTGAATTGGGCTCTGGTTCGATG 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 AGCAACAGAGATAAAGCAACATCCTTTCTTTGAAGGAGTGAATTGGGCTCTGGTTCGATG 1715
Query 1725 TGCCAGTCCACCGGAGATTCCTAAACCGGTTGATCTTGAAGCTTTGAATCCTACTCCTAC 1784
|||||| ||||||||||||||||||||||||||||||||| | || |||||||||||| |
Sbjct 1716 TGCCAGCCCACCGGAGATTCCTAAACCGGTTGATCTTGAACCGTTAAATCCTACTCCTGC 1775
Query 1785 TGTGCCAG-CAGCCGCATCTTCGAGTGTAAGATCTGATCAGAGTAATTATCTTGAGTTTG 1843
| |||| | | ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1776 TATGCC-GTCTGCCGCATCTTCGAGTGTGAGATCTGATCAGAGTAATTATCTTGAGTTCG 1834
Query 1844 ATTTCTTCTGAAGAAACTGTTTCCACAGTTGATGATTCTCATTATTGTTTCTTTGCAAAT 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 ATTTCTTCTGAAGAAACTGTTTCCACAGTTGATGATTCTCATTATTGTTTCTTTGCAAAT 1894
Query 1904 TCTGTTTAGTGTTTTCTACAAATGTGTTTCtttttttttcttctttttaattttCACGTC 1963
|||||||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 1895 TCTGTTTAGTGTTTTCCACAAATGTGTTTCCTTTTTTTG-TTCTTTTGAATTTTCACGTC 1953
Query 1964 TTGGAAAAAGTTATGAGAT-TT-GTAATCATTCTTCAAAGTTGTGAGACAGTCTCTGTAC 2021
||| ||||||||||||||| || |||||||||||||||| ||||| |||||||||||||
Sbjct 1954 TTG-AAAAAGTTATGAGATGTTTGTAATCATTCTTCAAAAATGTGAAACAGTCTCTGTAC 2012
Query 2022 CATCTTCTTGAGTTTA--A-TGTTAGACACGAACCATTGAGAA 2061
|||||||||||||||| | ||||||||| |||||||||||||
Sbjct 2013 CATCTTCTTGAGTTTATTAATGTTAGACAAGAACCATTGAGAA 2055
> Ahg483612 jgi|Araly1|483612|fgenesh2_kg.4__2672__AT2G44830.1
Length=2374
Score = 204 bits (110), Expect = 3e-51
Identities = 261/333 (78%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 1387 ATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCAGAGATCATCAAAGGTGAAGGACAT 1446
||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1817 ATGTCCTTTGTCGGAACCCACGAGTACTTAGCTCCAGAGATCATCAAAGGAGAAGGACAC 1876
Query 1447 GGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTTTCTTT-ATGAACTATTGTTTGGTAA 1505
||||| ||||| ||||||||||| ||||| ||||| | | | || || | | || ||
Sbjct 1877 GGAAGCGCAGTGGATTGGTGGACTTTTGGTATCTT-CGTGCACGAGCTCCTATACGGGAA 1935
Query 1506 AACACCGTTTAAAGGGTCAGGAAATCGAGCAACGCTCTTCAACGTGGTTGGTC-AGCCTC 1564
||| ||||| ||||| |||||||||||||| || || ||||| || || || | | |
Sbjct 1936 AACTCCGTTCAAAGGATCAGGAAATCGAGCTACTCTGTTCAATGTAGTCGG-CGAACAG- 1993
Query 1565 TT-AGATTCCCTGAATCTCCGGTTGTTAGCTTCGCAG-CTAGGGATTTGATA-AGGAGTT 1621
|| | ||||||||| || || | ||||| ||||| | ||||| |||||| ||| ||
Sbjct 1994 TTGAAATTCCCTGAGTCACCAGCAACTAGCTACGCAGGC-AGGGACTTGATACAGGC-TT 2051
Query 1622 TGCTTGTGAAGGAGCCACAACAT-AGATTAGCTTATAA-GCGTGGAGCAACAGAGATAAA 1679
| || ||||| || ||| || | || |||| | || | | |||||||||||||||||
Sbjct 2052 TACTGGTGAAAGATCCA-AAGAACAGGTTAGGG-ACAAAGAGAGGAGCAACAGAGATAAA 2109
Query 1680 GCAACATCCTTTCTTTGAAGGAGTGAATTGGGC 1712
||| ||||| ||||||||||| |||||||||||
Sbjct 2110 GCAGCATCCGTTCTTTGAAGGTGTGAATTGGGC 2142
> Ahg478629 jgi|Araly1|478629|fgenesh2_kg.3__1330__AT3G12690.1
Length=2102
Score = 165 bits (89), Expect = 1e-39
Identities = 277/365 (76%), Gaps = 24/365 (7%)
Strand=Plus/Plus
Query 1363 GCAGAGCCCACAGGCGCCCGTTCTATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCA 1422
|||||||| |||| | || || ||||| ||||| ||||||||||||||| | ||||||
Sbjct 1409 GCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTGGCTCCA 1468
Query 1423 GAGATCA-TCAAAGGTGAAGGACATGGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTT 1481
||||||| || || || |||||||| || || || || |||||||| || ||||||||
Sbjct 1469 GAGATCATTC-GTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGGATCTT 1527
Query 1482 TCTTTATGAACTATTGTTTGGTAAAACACCGTTTAAAGGGTCA-GGAAATC-GAGCAACG 1539
|||||||| || | ||| | || ||| || ||||| || ||||| | |||| |||
Sbjct 1528 CCTTTATGAGCTCCTCCATGGGACCACCCCG-TTCAAGGGGCAGGGAAA-CAGAGCCACG 1585
Query 1540 CT-CTTCAACGTGGTTGGTCAGCCTCT-TAGATTCCCTGAAT-CTCCGGTTGTTAGCTTC 1596
|| | ||| || || |||||||| || || ||||| | || | ||| ||| ||| ||
Sbjct 1586 CTGC-ACAATGTAGTGGGTCAGCCGCTGAAG-TTCCC-GGATACCCCGCATGTGAGC-TC 1641
Query 1597 -GCAGCTA-GGGATTTGAT--AAGGAGTTTGCTTGTGAAGGAGCCACAACA-TA-GATTA 1650
|| || | | ||| | || ||| || || |||||||| || | ||| | || |
Sbjct 1642 AGCGGC-ACGTGATCTCATCCGTGGA-CTT-CTAGTGAAGGATCCTC-ACAGAAGGA-TC 1696
Query 1651 GCTTATAAGCGTGGAGCAACAGAGATAAAGCAACATCCTTTCTTTGAAGGAGTGAATTGG 1710
||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1697 GCTTACACGCGGGGAGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGG 1756
Query 1711 GCTCT 1715
|||||
Sbjct 1757 GCTCT 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77666009555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5