BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55920.1
Length=2372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495674 jgi|Araly1|495674|fgenesh2_kg.8__1490__AT5G55920.1 2939 0.0
Ahg492148 jgi|Araly1|492148|fgenesh2_kg.7__1581__AT4G26600.1 1243 0.0
> Ahg495674 jgi|Araly1|495674|fgenesh2_kg.8__1490__AT5G55920.1
Length=2331
Score = 2939 bits (1591), Expect = 0.0
Identities = 1936/2093 (92%), Gaps = 61/2093 (3%)
Strand=Plus/Plus
Query 311 GATGAAGATGATATTTCTCCAGCTGTGGAATCAGAAGAGATTGATGAATCTGATGATGGA 370
|||||||||| | ||||| ||| || |||||||||||| ||||||||||||||||||||
Sbjct 269 GATGAAGATGCTCTTTCTACAGATGAAGAATCAGAAGAGCTTGATGAATCTGATGATGGA 328
Query 371 GAGAACGGGTCTAAT-CAGTTATTCTC---TGATGA---T---------GAGGAAGAGAA 414
||||| | ||||||| | ||||||||| |||||| | |||||||||||
Sbjct 329 GAGAAAGAGTCTAATGC-GTTATTCTCTGATGATGATGGTGAGGAGGAGGAGGAAGAGAA 387
Query 415 C---G---ATGAAGAGACTTTGGGTGACGATTTTCTAGAAGGTAGCGGCGATGAAGATGA 468
| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 388 CGATGACTATGAAGAGACTTTGGGTGACGATTTTCTAGAAGGTAGCGGCGATGAAGACGA 447
Query 469 GGAAGGATCTTTAGATGCGGATTCGGATGCTGACTCTGACGACGACGATATTGTG-GCGA 527
||||| | ||| ||||||||| | | |||||||||| ||| ||||||||||| | ||
Sbjct 448 GGAAGAACCTTCAGATGCGGA-T----T-CTGACTCTGATGACAACGATATTGTGAG-GA 500
Query 528 AATCTGATGCTATTGATAGAGACTTAGCA-ATGCAGAAGAAAGATGCTGCTGCTGAACTG 586
|||||||||||||||||||| | |||||| | | | |||||||| |||||||||||| ||
Sbjct 501 AATCTGATGCTATTGATAGACAATTAGCACA-GGATAAGAAAGACGCTGCTGCTGAAGTG 559
Query 587 -GAGGATTTTATCAAGCAAGATGATGTACATGATGAAGAACCTGAACATGATGCGTTTAG 645
| |||| |||||||||||| | | || ||||||||||| |||||||||||||||| |
Sbjct 560 CG-GGATAATATCAAGCAAGACG--G-ACCTGATGAAGAACTTGAACATGATGCGTTTCG 615
Query 646 GCTACCAACTGAAGAGGAGCTTGAAGAAGAAGCTCGTGGTCCACCAGATCTTCCTCTACT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GCTACCAACTGAAGAGGAGCTTGAAGAAGAAGCTCGTGGTCCACCAGATCTTCCTCTACT 675
Query 706 TAAGACTAGAATTGAAGAGATTGTTAGAGCTCTTAAAAATTTTAAGGCTTTCAGGCCAAA 765
||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 676 TAAGAGTAGAATTGAAGAGATTGTTAGAGCTCTGAACAATTTCAAGGCTTTCAGGCCAAA 735
Query 766 AGACACCACGAGGAAAGCTTGTGTTGAACAGCTCAAAGCTGATCTCGGTTCTTATTATGG 825
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 736 AGATACCACGAGGAAAGCTTGTGTTGACCAGCTCAAAGCTGATCTTGGTTCTTATTATGG 795
Query 826 TTATAACAGTTTTCTTATTGGAACTTTGGTTGAGATGTTTCCTCCTGGTGAACTTATGGA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TTATAACAGTTTTCTTATTGGAACTTTGGTTGAGATGTTTCCTCCTGGTGAACTTATGGA 855
Query 886 ACTTATTGAAGCTTTTGAAAAGCAAAGGCCTACGTCCATCCGAACTAACACACTTAAGAC 945
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 856 ACTTATTGAAGCTTTTGAAAAGCAAAGGCCTACATCTATCCGGACTAACACACTTAAGAC 915
Query 946 TCGAAGACGGGATCTTGCTGATGTACTTTTGAACAGAGGAGTCAATCTAGACCCATTAAG 1005
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TCGTAGACGGGATCTTGCTGATGTACTTTTGAACAGAGGAGTCAATCTAGACCCATTAAG 975
Query 1006 CAAGTGGTCTAAAGTTGGACTTGTTATTTATGATTCACAAGTCCCAATTGGTGCAACTCC 1065
||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 976 CAAGTGGTCAAAAGTTGGACTTGTTATCTATGATTCACAAGTCCCAATCGGTGCGACTCC 1035
Query 1066 TGAATATC-TGGCTGGGTACTACATGCTTCAAGGTGCTAGTTCGTTTTTGCCAGTGATGG 1124
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TGAATA-CTTGGCTGGTTACTACATGCTTCAAGGTGCTAGTTCGTTTTTGCCAGTGATGG 1094
Query 1125 CCCTTGCCCCTCGAGAGAATGAGCGGATTGTGGATGTAGCTGCTGCTCCTGGTGGTAAAA 1184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1095 CCCTTGCCCCTCGAGAGAATGAACGGATTGTGGATGTAGCTGCTGCTCCTGGTGGTAAAA 1154
Query 1185 CAACTTATATCGCCGCTCTAATGAAAAATACGGGCTTAATATATGCGAATGAGATGAAAG 1244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CAACTTATATCGCTGCTCTAATGAAAAATACGGGCTTAATATATGCGAATGAGATGAAAG 1214
Query 1245 TACCTAGGCTTAAGTCGCTAACTGCCAATCTGCATCGTATGGGGGTCACAAATACCATAG 1304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1215 TACCTAGGCTTAAGTCGCTAACTGCCAATCTGCATCGCATGGGGGTCACAAATACCATAG 1274
Query 1305 TTTGTAACTATGATGGAAGAGAGCTACCCAAGGTTTTAGGTCAGAACACGGTTGATAGAG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TTTGTAACTATGATGGAAGAGAGCTACCCAAGGTTTTAGGTCAGAACACGGTTGATAGAG 1334
Query 1365 TATTGTTGGATGCGCCTTGCAGTGGGACTGGAATTATATCAAAAGATGAATCAGTTAAAA 1424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1335 TATTGTTGGATGCGCCTTGCAGTGGGACTGGAATCATATCAAAAGATGAATCAGTTAAAA 1394
Query 1425 TAACGAAAACCATGGATGAGATAAAGAAATTTGCTCACTTGCAAAAGCAACT-TCTACTC 1483
||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1395 TAACGAAAACCGTTGATGAGATAAAGAAATTTGCTCACTTGCAAAAGCAACTAT-TACTC 1453
Query 1484 GCTGCTATTGATATGGTGGATGCCAATTCCAAAACCGGTGGATATATAGTTTATTCAACA 1543
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1454 GCTGCTATTGATATGGTGGACGCCAATTCCAAAACCGGTGGATATGTAGTTTATTCAACA 1513
Query 1544 TGTTCAATTATGGTTACTGAGAATGAAGCCGTCATTGACTATGCCCTCAAAAAGAGGGAT 1603
||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||||
Sbjct 1514 TGTTCAATTATGGTTACCGAGAACGAAGCTGTCATTGACTATGCTCTTAAAAAGAGGGAT 1573
Query 1604 GTTAAACTCGTTACGTGTGGTCTCGATTTTGGCAGAAAAGGATTTACCAGATTTAGAGAA 1663
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1574 GTTAAACTCGTTACATGTGGACTCGATTTTGGCAGAAAAGGATTTACCAGATTTAGAGAA 1633
Query 1664 CACCGGTTTCAGCCATCTTTGGACAAGACTAGACGTTTCTATCCTCATGTACACAACATG 1723
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1634 CACCGGTTTCAGCCTTCTTTAGACAAGACTAGACGTTTCTATCCTCATGTACACAACATG 1693
Query 1724 GACGGATTTTTTGTGGCAAAGCTGAAGAAAATGAGCAACGTGAAGCAATCTTCAGAAGAA 1783
||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1694 GACGGATTTTTTGTGGCGAAGCTGAAGAAAATGAGCAACATGAAGCAATATTCAGAAG-- 1751
Query 1784 GGTGATGATGATGCGGTAGAAACTGTAGAGCAAGCTGAAGTGTCTAGTGATGATGATGAT 1843
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 G-TGATGATGAGGCGGTAGAAACTGTAGAGCAAGCTGAAGTGTCTAGTGATGATGATGAT 1810
Query 1844 GA--A-GCTGAGGCCATTGAAGAGACGGAGAAGCCTTCTGTTCCCGTTAGGCAACCTAAG 1900
|| | ||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 1811 GATGAAGCTGAGGCCATTGAAGAGATTGAGAAGCCTTCTGTTCCTGATAGGCAACCTAAG 1870
Query 1901 gaaagaaaagaaaaaaagaacaaggaaaaacttgcaaaatcaaaggaggacaagagaggt 1960
|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1871 GAAACAAAAGAAAAAAAGAACAAGGAAAGACTTGCAAAATCAAAGGAGCACAAGAGAGGT 1930
Query 1961 aaaaaggataagaaatcaaaatctgaaaaTGTGGAAGAGCCATCTAAACCAAGGAAGCAA 2020
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1931 AAAAAGGATAAGAAAGCAAAATCTGAAAATGTGGAAGAGCCATCTAAAGCAAGGAAGCAA 1990
Query 2021 AAGAAGAAGAGA-CGGGAATGGAAGAACGAAATAGCTCAAGCTAGGGAAGAGAAAAGAAT 2079
|||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1991 AAGAAGAAGAGATCTG-AATGGAAGAACGAAATTGCTCAAGCTAGGGAAGAGAAAAGAAT 2049
Query 2080 AGCCATGCGGGAGAAGGCGAAGGAGGAGAAGTAATGATGATTCAGTGTTTTTTCATCAAA 2139
||||||||| ||||||| ||||||||||||| |||||| | |||||||||| |||||||
Sbjct 2050 AGCCATGCGAGAGAAGGTGAAGGAGGAGAAGCAATGAT--T-CAGTGTTTTTGCATCAAA 2106
Query 2140 GAGAAGAAAAAACATTTGCGAAAACGTTATCATCTATGGTTATAGTAGGCTTGTGCCATA 2199
||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2107 GAGAAGAGAC--CATTTGCGAAAACACTATCATCTATGCTTATAGTAGGCTTGTGCCATG 2164
Query 2200 TATTGGCTTTCTTGTTTTTGTTTATTCACGACGAGATTTGTGCAACGTTAAAAGCACCCA 2259
|||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||| |||
Sbjct 2165 TATTGGCTTTGTTGTTTTTGTTTATTCACGAC-A-ATTTGTGCAACATTAAAAGCAGCCA 2222
Query 2260 GAGTGAGCACTCTGTTGGACTCCGTGGGCAGACCACCTTAAATGTCCAAAAGTTTTGTTT 2319
|||||| |||||||||||||||| ||| ||| || |||||||||||||||||||||||
Sbjct 2223 GAGTGAACACTCTGTTGGACTCCATGGACAGGCC---TTAAATGTCCAAAAGTTTTGTTT 2279
Query 2320 CAGaaaaaaaTCTTTTAAGAGAATCAAAGTTAAGTTGTGTTCTTGAGCCGATC 2372
||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||
Sbjct 2280 CAGAAAAAAATCTTTCAAGAGTATCAA-GTTAAATTGTGATCTTGAGCCGATC 2331
Score = 327 bits (177), Expect = 2e-88
Identities = 240/268 (90%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 4 TCTTCTACTTCTTCTCTTAAACCCTGGCCGCGCGAGAAAACCCTAATTCAAACCTGTAGC 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTACTTCTTCTGTTAAACCCTGGCCGCGCGAGAAAACCCTAATTCAAACCTGTAGC 60
Query 64 CATGCCTGCCCTCACTCGTAACAAGAAGAAGGCTGCGACGAAATCG-ATAACCCCTCCAA 122
||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 61 CATGCCTGCTCTCACTCGTAACAAGAAGAAAGCTGCGACGAAATCGCA-AACCCCTCCAA 119
Query 123 CGAAGCAGCTTACCAAATCCAAAACCCCTCCA---A---T---G---AAACCCCAAACTT 170
|||||||| |||||||||||||| | |||||| | | | ||||||||| |||
Sbjct 120 CGAAGCAGGTTACCAAATCCAAAGCTCCTCCATCGAAGATTCAGTCGAAACCCCAATCTT 179
Query 171 CAATGTTGAAGAAAGGAGCGAAATCTCAGAACAAACCTCCATTGAAGAAGCAGAAGAAGG 230
| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CGACGTTGAAGAACGGAGCGAAATCCCAGAACAAACCTCCATTGAAGAAGCAGAAGAAGG 239
Query 231 AAGTTGTGGAGGAAGAGCCTCTAGAAGA 258
|| |||| |||||||||||||| |||||
Sbjct 240 AAATTGTCGAGGAAGAGCCTCTCGAAGA 267
> Ahg492148 jgi|Araly1|492148|fgenesh2_kg.7__1581__AT4G26600.1
Length=2189
Score = 1243 bits (673), Expect = 0.0
Identities = 1256/1524 (82%), Gaps = 94/1524 (6%)
Strand=Plus/Plus
Query 634 TGATGCGTTT-AGGCTACCAACTGAAGAGGAGCTTGAAGAAGAAGCTCGT-GGTCCACCA 691
||||| |||| | ||||||||| || |||| ||||||||||| || ||| || |||||
Sbjct 513 TGATGAGTTTCA-GCTACCAACACAAAAGGAACTTGAAGAAGAGGCACGTAGG-CCACCT 570
Query 692 GATCTTCCTCTA-CTT--AAGACT-AGAATTGA-AGAGATTGTTAGAGCT-CT-TAAAAA 744
|||||| | ||| ||| || | | || | | | |||||||||||||| | || | ||
Sbjct 571 GATCTT-C-CTAGCTTGCAA-A-TCAGGA-TAAGAGAGATTGTTAGAG-TGCTGT-CGAA 623
Query 745 TTTTAAGG-CTTTCAGGCC-AAA--AGAC-ACCAC--GAGGAAAGCTTGTGTTGAACAGC 797
|||||||| | || ||||| ||| |||| | ||| |||||| | || |||||||||||
Sbjct 624 TTTTAAGGAC-TTGAGGCCAAAAGGAGACAAGCACGAGAGGAATGATTATGTTGAACAGC 682
Query 798 TCAAAGCTGATCTCGGTTCTTATTATGGTTATAA-CAGTTTTCTTATTGGAACTTTGGTT 856
| ||||||||||| |||||||| || |||||||| || |||||||||||||||||| ||
Sbjct 683 TTAAAGCTGATCTTGGTTCTTACTACGGTTATAATGAG-TTTCTTATTGGAACTTTGATT 741
Query 857 GAGATGTTTCCTCCTGGTGAACTTATGGAACTTATTGAAGCTTTTGAAAAGCAAAGGCCT 916
|||||||||||| || |||||| |||||||| |||||||||||||||||| |||| |||
Sbjct 742 GAGATGTTTCCTGTTGTTGAACTCATGGAACTAATTGAAGCTTTTGAAAAGAAAAGACCT 801
Query 917 ACGTCCATCCGAACTAACACACTTAAGACTCGAAGACGGGATCTTGCTGATGTACTTTTG 976
|| || ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 802 ACATCTATCCGTACTAACACTCTTAAGACTCGAAGACGGGATCTGGCTGATGTACTTTTG 861
Query 977 AACAGAGGAGTCAATCTAGACCCATTAAGCAAGTGGTCTAAAGTTGGACTTGTTATTTAT 1036
|| |||||||| ||||| ||||| |||||||||||||| |||||||||||| | |||||
Sbjct 862 AATAGAGGAGTTAATCTTGACCCGTTAAGCAAGTGGTCAAAAGTTGGACTTATCGTTTAT 921
Query 1037 GATTCACAAGTCCCAATTGGTGCAACTCCTGAATATCTGGCTGGG-TACTACATGCTT-C 1094
||||| ||||| || ||||||||||||||||||||| |||| ||| | ||| ||| || |
Sbjct 922 GATTCCCAAGTTCCGATTGGTGCAACTCCTGAATATTTGGC-GGGTTTCTATATG-TTGC 979
Query 1095 AAGGTGCTAGTTCGTTTTTGCCAGTGATGGCCCTTGCCCCTCGAGAGAATGAGCGGA-TT 1153
|| |||||||||| || |||||||||||||||||||| ||||| || || |||| || ||
Sbjct 980 AAAGTGCTAGTTCCTTCTTGCCAGTGATGGCCCTTGCTCCTCGGGAAAAAGAGC-GAGTT 1038
Query 1154 GTGGATGTAGCTGCTGCTCCTGGTGGTAAAACAACTTATATCGCCGCTCTAATGAAAAAT 1213
||||| | |||||||| ||||||||||||||||| ||| | || || ||||||||||||
Sbjct 1039 GTGGACATGGCTGCTGCCCCTGGTGGTAAAACAACCTATGTTGCTGCACTAATGAAAAAT 1098
Query 1214 ACGGGCTTAATATATGCGAATGAGATGAAAGTACCTAGGCTTAAGTCGCTAACTGCCAAT 1273
|| || |||||||||| || |||||||||||||||||||||||||| || ||||||||
Sbjct 1099 ACAGGAATAATATATGCAAACGAGATGAAAGTACCTAGGCTTAAGTCACTTTCTGCCAAT 1158
Query 1274 CTGCATCGTATGGGGGTCACAAATACCATAGTTTGTAACTATGATGGAAGAGAGCTACCC 1333
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTGCATCGCATGGGGGTGACAAATACCATAGTTTGTAACTATGATGGAAGAGAGCTACCC 1218
Query 1334 AAGGTTTTAGGTCAGAACACGGTTGATAGAGTATTGTTGGATGCGCCTTGCAGTGGGACT 1393
|||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 1219 AAGGTTTTAGGTCAGAACTCGGTTGATAGAGTATTGCTGGATGCTCCTTGCAGTGGAACT 1278
Query 1394 GGAATTATATCAAAAGATGAATCAGTTAAAA-TAACGAAAAC--CATGGATGAGATAAAG 1450
||| | ||||||||||||||||||||||||| | | |||| | || |||| ||||||
Sbjct 1279 GGAGTGATATCAAAAGATGAATCAGTTAAAACTTCC-AAAAGTGC-TG-ATGACATAAAG 1335
Query 1451 AAATTTGCTCACTTGCAAAAGCAACTTCTACTCGCTGCTATTGATATGGTGGATGCCAAT 1510
|||||||| || ||||||||||||||| |||| | ||| |||||| |||| || ||||||
Sbjct 1336 AAATTTGCCCATTTGCAAAAGCAACTTATACTTGGTGCGATTGATTTGGTAGACGCCAAT 1395
Query 1511 TCCAAAACCGGTGGATATATAGTTTATTCAACATGTTCAATTATGGTTACTGAGAATGAA 1570
|||||||||||||||||||| ||||| |||||||| ||||||||| || | ||||| |||
Sbjct 1396 TCCAAAACCGGTGGATATATTGTTTACTCAACATGCTCAATTATGATTCCCGAGAACGAA 1455
Query 1571 GCCGTCATTGACTATGCCCTCAAAAAGAGGGATGTTAAACTCGTTACGTGTGGTCTCGAT 1630
|| ||||| || ||||| || ||||| |||||||||||||||||| | ||||| || |||
Sbjct 1456 GCTGTCATCGATTATGCTCTGAAAAACAGGGATGTTAAACTCGTTCCATGTGGACTTGAT 1515
Query 1631 TTTGGCAGAAAAGGATTTACCAGATTTAGAGAACACCGGTTTCAGCCATCTTTGGACAAG 1690
|||||| || |||||||| ||| ||||||||||||||||| || || ||||| || |||
Sbjct 1516 TTTGGCCGACCAGGATTTAGCAGTTTTAGAGAACACCGGTTCCACCCTTCTTTAGAGAAG 1575
Query 1691 ACTAGACGTTTCTATCCTCATGTACACAACATGGACGGATTTTTTGTGGCAAAGCTGAAG 1750
|| ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||||
Sbjct 1576 ACAAGACGTTTCTATCCTCACGTACACAACATGGATGGATTCTTTGTTGCTAAGCTGAAG 1635
Query 1751 AAAATGAGCAACGTGAA-GCAATCTTCAGAAGAAGGTGATGATGATGCG-G-TAGAA-AC 1806
|| |||||||| | || ||| |||||| ||| ||||||| || | || || |
Sbjct 1636 AAGATGAGCAATGC-AATGCAGCCTTCAG--GAA----ATGATGA-GCCAGATATAACAA 1687
Query 1807 TGTAGAGCAAGCTGAAGTGTC-T--AGTGATGATGATGATGA-A--GCTGAGGCCATTGA 1860
|| ||||||||| | ||||| | |||||| |||||||||| | | ||||||||||||
Sbjct 1688 TG--GAGCAAGCTCAGGTGTCGTCTAGTGATAATGATGATGAGAAAGGTGAGGCCATTGA 1745
Query 1861 AGAGACGGAGAAGCCTTCTGTTCCCGTTAGG-CAACCTAAG-ga-aa-g-aa-a--aga- 1911
||| |||||||| ||||| || | || ||||| ||| || || | || | |||
Sbjct 1746 GGAGTTAGAGAAGCCACCTGTTACCAAT-GGACAACCCAAGCGAGAAAGTAACACTAGAG 1804
Query 1912 aaaa-aagaacaagga-aaaacttgcaaaatcaaaggagga--ca-agagaggtaaaaag 1966
|||| |||||||| | |||| || ||| ||||||||| | || | | ||| |||| |
Sbjct 1805 AAAACAAGAACAAACAGAAAA-TTCCAAGGTCAAAGGAG-ATTCATA-A-AGGCAAAA-G 1859
Query 1967 gataagaaatcaaaatctgaaaaTGTGGAAG-AGCCATCT--AA-A-CCAAGGAAGCAAA 2021
|| | |||| | | | |||| ||||| || || | || | || ||||||||||
Sbjct 1860 GA-AC-AAAT-ACA--CA-AAAACC-GGAAGTAGTAATGTGGAAGAACCCAGGAAGCAAA 1912
Query 2022 AGAAGAAGAGA-CGGGAATGGAAGAACGAAATAGCTCAAGCTAGGGAAGAGAAAAGAATA 2080
||||||||||| | |||||||||| ||||| ||||||||||| ||||||||||||| |
Sbjct 1913 AGAAGAAGAGATCAC-AATGGAAGAATGAAATTGCTCAAGCTAGAGAAGAGAAAAGAAAA 1971
Query 2081 GCCATGCGGGAGAAGGCGAAGGAG 2104
|||||| | ||||| || ||||||
Sbjct 1972 GCCATGAGAGAGAATGCTAAGGAG 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89359714770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5