BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55930.1
Length=2820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495675 jgi|Araly1|495675|fgenesh2_kg.8__1491__AT5G55930.1 4289 0.0
Ahg492149 jgi|Araly1|492149|fgenesh2_kg.7__1582__AT4G26590.1 1522 0.0
> Ahg495675 jgi|Araly1|495675|fgenesh2_kg.8__1491__AT5G55930.1
Length=2768
Score = 4289 bits (2322), Expect = 0.0
Identities = 2620/2763 (95%), Gaps = 23/2763 (1%)
Strand=Plus/Plus
Query 66 TGTCGAAAGTCTATATATGAAGTCAAATTCATGAACAAATGCTTCTAGGCTAAAAACGTT 125
|||| ||||||||||||||||||| ||| || | |||||||||||| |||| ||||||||
Sbjct 21 TGTCTAAAGTCTATATATGAAGTC-AATCCACGCACAAATGCTTCTGGGCTGAAAACGTT 79
Query 126 ATCGTAATCTTTAATCTTCAGGCTTCTTTTCTAAAATTCCGACTGGTTACCGAGGGCTAG 185
||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 80 ATCGTAATCTTTAATTTTCAGGCTCCCTTT-TAAAATTCCGACTGGTTACCGAGGGCTAG 138
Query 186 AAAATCCGGTCACCGTCGCCGGAGACAACCTCG-GTTTCTAAACGAAACCATCGTGAAGG 244
||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||
Sbjct 139 AAAATCCGGTCACCGTCGCCGGAGACAACCTCGAG-TTCT-AACCAAACCATCGTGAAGG 196
Query 245 ACGGAAAAAAGGAGCTTGAAGACAAAACAATGACGAGCGTTTTCGACGAACATAAACCCT 304
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 197 ACGGAAAAAAGGAGCTTGAAGACATAACAATGACGAGCGTTTTCGATGAACCTAAACCCT 256
Query 305 CCGATGACTCTCACGAGTCCAAGATCGTCATCAATGGAGAAGAAGAGGTGTTGGAGGAGG 364
|||| || |||||||||||||||||||| ||||||| || |||||| | ||||||||
Sbjct 257 CCGACGATTCTCACGAGTCCAAGATCGTAATCAATGCAGGAGAAGAAGAAAAGGAGGAGG 316
Query 365 AGAATGATAATCCGATTGAAGAAGTCCGGTTAACGGTACCGATAACCGACGATCCAACAC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGAATGATAATCCGATTGAAGAAGTCCGGTTAACGGTACCGATAACCGACGATCCAACAC 376
Query 425 TACCGGTGCTAACGTTTCGAACATGGACTCTTGGACTTTTCTCTTGCATATTGCTTGCCT 484
| ||||| ||||| |||||||||||| |||||||||| |||||||||| |||||||| |
Sbjct 377 TGCCGGTTCTAACATTTCGAACATGGTTTCTTGGACTTCTCTCTTGCATCTTGCTTGCTT 436
Query 485 TCGTGAACCAGTTCTTTGGTTTCCGGTCGAACCAGCTTTGGGTATCTTCAGTTGCGGCAC 544
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 437 TCGTGAACCAGTTCTTCAGTTTCCGGTCGAACCAGCTTTGGGTATCTTCAGTTGCTGCGC 496
Query 545 AGATCGTGACCCTTCCGCTAGGGAAACTCATGGCAAAGACGCTACCGACAAAGAAATTTG 604
||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |
Sbjct 497 AGATCGTGACCCTCCCGCTGGGGAAACTCATGGCGAAGACGCTACCGACCAAGAAATTCG 556
Query 605 GGTTTCCCGGGACGAATTGGTCGTGGTCTTTTAACCCTGGTCCGTTCAATATGAAGGAAC 664
||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 557 GGTTTCCTGGGACGAATTGGTCGTGGTCATTGAACCCTGGTCCGTTCAATATGAAAGAAC 616
Query 665 ATGTTCTTATTACAATATTTGCTAACACCGGAGCTGGTGGAGTTTACGCCACCAGTATTA 724
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 617 ATGTTCTTATTACAATATTTGCTAATACCGGAGCTGGAGGAGTTTACGCCACAAGTATTA 676
Query 725 TTACCATTGTTAAAGCGTTTTATAATCGTCAACTTAATGTCGCCGCCGCCATGTTGCTCA 784
|||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 677 TTACCATTGTTAAAGCTTTTTACAACCGTCAACTCAATGTCGCCGCCGCGATGTTGCTCA 736
Query 785 CTCAAACCACTCAGTTGTTGGGATATGGATGGGCTGGAATCTTCAGGAAGTTCCTTGTGG 844
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 737 CACAAACCACTCAGTTGTTGGGATATGGATGGGCTGGAATTTTCAGGAAGTTCCTTGTGG 796
Query 845 ATTCACCGTATATGTGGTGGCCGTCAAATTTGGTTCAAGTCTCACTCTTTAGAGCTTTAC 904
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 797 ATTCACCGTATATGTGGTGGCCGTCAAATCTGGTTCAAGTCTCACTGTTTAGAGCTTTAC 856
Query 905 ATGAGAAGGAGGATCTACAAAAAGGGCAACAAACAAGGTTTAGATTCTTCATCATTGTCT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ATGAGAAGGAGGATCTACAAAAAGGGCAACAAACAAGGTTTAGATTCTTCATCATTGTCT 916
Query 965 TCTGTGTGAGCTTTGCTTACTACATAATCCCCGGCTACCTTTTCCCTTCCATTTCCGCAA 1024
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 917 TCGGCGTGAGCTTTGCTTACTACATAATCCCCGGCTACCTTTTCCCTTCCATCTCCGCGA 976
Query 1025 TTTCATTTGTTTGCTGGATTTGGAAAAGCTCAGTGACCGCTCAGATTGTCGGTTCTGGGC 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 977 TTTCATTTGTTTGCTGGATTTGGAAAAGCTCAGTGACCGCTCAGATTGTCGGTTCGGGGC 1036
Query 1085 TCAAGGGTTTAGGTATTGGTTCGTTCGGTCTTGACTGGTCCACAGTTGCTGGTTTCTTAG 1144
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1037 TCAAGGGTTTAGGAATTGGTTCGTTTGGTCTTGACTGGTCCACAGTTGCTGGTTTCTTAG 1096
Query 1145 GCAGTCCGTTGGCTGTACCATTCTTCGCCATTGCCAATTTCTTTGGAGGATTCTTCATCT 1204
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1097 GCAGTCCATTGGCTGTACCATTCTTCGCCATTGCCAACTTCTTTGGCGGATTCTTCATCT 1156
Query 1205 TTTTATACATTGTTCTACCTATCTTCTACTGGACTAATGCTTATGATGCTCAGAAGTTTC 1264
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1157 TTTTATACATTGTTCTGCCTATCTTCTACTGGACTAATGCTTATGATGCACAGAAGTTTC 1216
Query 1265 CGTTCTATACTTCACACACCTTTGATCAGACTGGACACACCTATAACATTACCCGTATCC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 CGTTCTATACTTCACACACCTTTGATCAGACTGGACACACCTATAACATTACCCGTATCC 1276
Query 1325 TCAATGAGAAGAATTTCGATATCAATCTAGACGCTTACAACGGTTACAGCAAGCTCTATT 1384
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TCAATGAGAAGAATTTTGATATCAATCTAGACGCTTACAACGGTTACAGCAAGCTCTATT 1336
Query 1385 TGAGTGTGATGTTCGCGTTGCTCTATGGACTCAGCTTTGGTTCTCTTTGCGCTACCATCT 1444
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1337 TGAGTGTGATGTTCGCGTTGCTCTATGGACTCAGCTTCGGTTCTCTTTTCGCTACCATCT 1396
Query 1445 CTCATGTTGCCCTCTATGATGGAAAGTTTATATGGGGAATGTGGAAGAAGGCAAAGACAG 1504
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1397 CTCATGTCGCCCTCTATGATGGAAAGTTTATATGGGGAATGTGGAAGAAGGCAAAAACAG 1456
Query 1505 CAACAAAGGACAAGTACGGTGACGTGCATTCGAGATTGATGAAGAAGAATTATCAATCAG 1564
||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||
Sbjct 1457 CAACAAAGGACAAGTACGGAGATGTGCATTCGAGATTAATGAAGAAGAATTATCAGTCAG 1516
Query 1565 TACCTCAATGGTGGTTCATCGCAGTTCTAGTTATTTCCTTTGCTTTCGCACTCTATGCTT 1624
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1517 TACCTCAATGGTGGTTCATCGTAGTTCTAGTTATTTCCTTTGCTTTCGCACTCTATGCTT 1576
Query 1625 GCGAGGGCTTTGACAAACAGCTTCAGCTCCCATGGTGGGGACTTATACTCGCTTGCGCCA 1684
| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1577 GTGAAGGCTTTGACAAACAGCTTCAGCTTCCATGGTGGGGACTTATACTCGCGTGCGCCA 1636
Query 1685 TCGCTTTGTTCTTCACATTACCTATCGGAGTTATCCAAGCAACTACTAACCAGCAAATGG 1744
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1637 TCGCCTTGTTCTTCACATTGCCTATCGGAGTTATCCAAGCAACTACGAACCAGCAAATGG 1696
Query 1745 GTCTTAACGTTATAACAGAACTGATCATCGGGTACTTATACCCAGGAAAGCCACTAGCCA 1804
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 GTCTTAATGTTATAACAGAACTGATCATCGGGTACTTATACCCAGGAAAGCCACTAGCCA 1756
Query 1805 ATGTCGCTTTCAAGACATACGGATACATCAGTATGTCTCAAGCCTTGTACTTTGTAGGAG 1864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 ATGTCGCTTTCAAGACATATGGATACATCAGTATGTCTCAAGCCTTGTACTTTGTAGGAG 1816
Query 1865 ACTTCAAGCTTGGTCACTACATGAAGATTCCTCCAAGATCAATGTTCATCGTCCAGCTTG 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 ACTTCAAGCTTGGTCACTACATGAAGATTCCTCCAAGATCAATGTTCATCGTCCAGCTTG 1876
Query 1925 TTGCAACTGTGGTTGCATCAACTGTCTGCTTCGGAACAACCTGGTGGCTCATTACATCCG 1984
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1877 TTGCAACTGTGGTTGCCTCAACTGTCTGCTTCGGAACAACTTGGTGGCTCATTACATCTG 1936
Query 1985 TCGAGAACATATGTAATGTCGATTTGCTCCCGGTGGGTAGTCCATGGACTTGTCCTGGAG 2044
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 TAGAGAACATATGTAACGTGGATTTGCTCCCGGTGGGTAGTCCATGGACTTGTCCTGGAG 1996
Query 2045 ATGAAGTGTTCTACAATGCATCAATCATATGGGGAGTGATTGGTCCAGGGAGAATGTTTA 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ATGAAGTGTTCTACAATGCATCAATCATATGGGGAGTGATTGGTCCAGGGAGAATGTTTA 2056
Query 2105 CCAAAGAAGGTATCTATCCCGGGATGAACTGGTTCTTCCTTATCGGTCTCCTCGCTCCAG 2164
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2057 CCAAAGAAGGTATCTATCCCGGGATGAACTGGTTCTTCCTTATCGGTCTCCTTGCTCCAG 2116
Query 2165 TTCCCTTCTGGTACCTATCGAAGAAGTTCCCAGAGAAGAAATGGCTAAAACAGATCCATG 2224
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 TTCCTTTCTGGTACCTATCGAAGAAGTTCCCAGAGAAGAAATGGCTAAAACAGATCCATG 2176
Query 2225 TTCCCTTGATCTTCTCTGCAGTAAGCGCCATGCCACAAGCTAAGGCTGTGCATTACTGGT 2284
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 2177 TTCCCTTGATCTTCTCGGCGGTAAGCGCAATGCCACAAGCTAAGGCTGTGCATTACTGGT 2236
Query 2285 CCTGGGCCATCGTTGGGGTTGTGTTCAACTACTACATCTTCAGGAGGTTCAAAACTTGGT 2344
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2237 CCTGGGCCATCGTTGGGGTTGTGTTCAACTACTACATCTTCAGGAGGTTTAAAACTTGGT 2296
Query 2345 GGGCGAGGCACAATTACATCCTCTCTGCGGCGCTTGATGCAGGTACTGCGATTATGGGAG 2404
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2297 GGGCGAGGCACAACTACATCCTCTCTGCAGCGCTTGATGCAGGTACTGCGATTATGGGAG 2356
Query 2405 TGTTGATATTCTTCGCATTCCAGAACAATGATATAAGCTTACCTGATTGGTGGGGGCTTG 2464
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2357 TGTTGATATTCTTCGCATTTCAGAACAATGATATAAGCTTACCTGATTGGTGGGGGCTTG 2416
Query 2465 AGAATTCAGACCATTGCCCTCTAGCGCATTGCCCT-CTAGCCAAAGGTGTTGTTGTTGAA 2523
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 2417 AGAATTCAGACCATTGCCCTCTAGCGCATTGCCCAACG-GCCAAAGGTGTAGTTGTTGAA 2475
Query 2524 GGTTGTCCCGTGTTTTAAGAATTGAAGTAGATGCAACGTTGTCCTGAAAGGGGTAACTGT 2583
|||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||
Sbjct 2476 GGTTGTCCCGTGTTTTAAGA-TTGATGAAGATGCAACCTTGTCCTGAAAGGGGTAACTGT 2534
Query 2584 TGATGGCTTCGGTAACCTTATATCTGTGTAAAACCC-TCC--AAG---TTAAGGGACTCA 2637
||||| | || | | |||||||| ||||| |||| ||| ||| |||||||| |||
Sbjct 2535 TGATG--T-CG-T--CGTTATATCTTTGTAATACCCCTCCCTAAGAAGTTAAGGGATTCA 2588
Query 2638 AACAATGTAAAGCACTAGATTTGGTTTCATGTTCTTCAGTATTTAACTATTCCCTTTGTA 2697
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2589 AACAATGTAAAGCACTAGATTTGGTTTCATGTTCTTCAGTATTTAACTATTTACTTTGTA 2648
Query 2698 AGTATAAGAACAGTAGCCAAATAAAGTAGAGCTTTCTTCATTCCAACTATATAATCAAAA 2757
| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2649 ACTTTAAGAACAATAGCCAAATAAAGTAGAGCTTTC---ATTCCAACTATATAATCAAAA 2705
Query 2758 TGTAACAAGCTCCAAAAGATATCATTCAAATGATATAACTAAGGTTTAAGATGTGTACCA 2817
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2706 TGCAACAAGCTCCAAGAGATATCATTCAAATGATAAAACTAAGGTTTAAGATGTGTACCA 2765
Query 2818 ATT 2820
|||
Sbjct 2766 ATT 2768
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2 AAAATTCATGTGGTGTAAATTGTCTAAAGTCTGTAt 37
|||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAATTCATGTGGTGTAAATTGTCTAAAGTCTATAT 36
> Ahg492149 jgi|Araly1|492149|fgenesh2_kg.7__1582__AT4G26590.1
Length=2510
Score = 1522 bits (824), Expect = 0.0
Identities = 1739/2178 (80%), Gaps = 74/2178 (3%)
Strand=Plus/Plus
Query 358 GAGGAGGAGAATGATAATCCGATTGAAGAAGTCCGGTTAACGGTACCGATAACCGACGAT 417
|||||||| || || | ||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 194 GAGGAGGAAAACGACAGTCCAATTGAAGAGGTCCGGTTAACCGTGCCGATAACCGACGAT 253
Query 418 CCAACACTACCGGTGCTAACGTTTCGAACATGGACTCTT-GGACTTTTCTCTTGCATATT 476
||| | |||||||| | ||||| ||||||||| |||| ||| | | |||||| | |
Sbjct 254 CCATCTCTACCGGTTTTGACGTTCCGAACATGG-TTCTTAGGAATGGTGTCTTGCGTGGT 312
Query 477 GCTTGCCTTCGTGAACCAGTTCTTTGGTTTCCGGTCGAACCAGCT-TTGGGTATCTTCAG 535
|| || ||||||||| | ||||| |||| ||||||||| ||||| | |||||||||||
Sbjct 313 ACTCGCGTTCGTGAACAATTTCTTCGGTTACCGGTCGAATCAGCTCAT-GGTATCTTCAG 371
Query 536 TTGCGGCACAGATCGTGACCCTTCCGCTAGGGAAA-CTCATGGCAAAGACGCTACCGACA 594
| | ||| |||||||| || || || ||| ||||| |||||||| | ||| ||||| |||
Sbjct 372 TCGTGGCTCAGATCGTCACTCTCCCTCTA-GGAAAGCTCATGGCCACGACTCTACCAACA 430
Query 595 A-AGAAATTTGGGTTTCCCGGGACGAATTGGTCGTGGTCTTTTAACCCTGGTCCGTTCAA 653
| | ||| | |||| || || || ||||||||||| || || |||||||| || || ||
Sbjct 431 ACA-AAACTCCGGTTACCTGGTACAAATTGGTCGTGTTCGTTGAACCCTGGACCATTTAA 489
Query 654 TATGAAGGAACATGTTCTTATTACAATATTTGCTAACACCGGAGCTGGTGGAGTTTACGC 713
|||||||||||||| || || || ||||| ||||| || || || || |||| ||| ||
Sbjct 490 CATGAAGGAACATGTACTAATCACCATATTCGCTAATACTGGGGCCGGAGGAGCTTATGC 549
Query 714 CACCAGTATTATTACCATTGTTAAAGCGTTTTATAATCGTCAA-CTTAATGTCGCCGCCG 772
||||| || || ||||| |||||||| |||||| | || || || ||| |||||| |
Sbjct 550 GACCAGCATCATAACCATCGTTAAAGCATTTTATCACCG-GAACCTCAATCCCGCCGCGG 608
Query 773 CCATGTTGCTCACT-CAAACCACTCAGTTGTTGGGATATGGATGGGCTGGAATCTTCAGG 831
|||||||||| || |||||||||||||||||||||||||||||||| || || ||||||
Sbjct 609 CCATGTTGCT-TCTGCAAACCACTCAGTTGTTGGGATATGGATGGGCGGGTATGTTCAGG 667
Query 832 AAGTTCCTTGTGGATTCACCGTATATGTGGTGGCCGT-CAAAT-TTGGTTCAAGTCTCAC 889
|| ||||| ||||| ||||| || ||||||||||| | ||||| || ||||||||||| |
Sbjct 668 AAATTCCTAGTGGACTCACCTTACATGTGGTGGCC-TGCAAATCTT-GTTCAAGTCTCTC 725
Query 890 TCTTTAGAGCTTTACATGAGAAGGAGGATCTA-CAAAAAGGGC-AACAAACAAGGTTTAG 947
|||||||||| || |||||||||||||| | | || ||| |||||||||| ||||
Sbjct 726 TCTTTAGAGCCTTGCATGAGAAGGAGGA-GAAGCGTGAA-GGCAAACAAACAAGACTTAG 783
Query 948 ATTCTTCATCATTGTCTTCTGT-GTGAGCTTTGCTTACTACATAATCCCCGGCTACCTTT 1006
||||||| | || ||||||| | ||||||| ||||||||||| |||| ||||| ||||
Sbjct 784 ATTCTTCTTAATAGTCTTCT-TCCTGAGCTTCACTTACTACATAGTCCCAGGCTATCTTT 842
Query 1007 TCCCTTCCATTTCCGCAATTTCATTTGTTTGCTGGATTTGGAAAAGCTCAGTGACCGCTC 1066
|||||||||| || | | || ||||| |||||||| |||| |||| ||||||||||
Sbjct 843 TCCCTTCCATCTCATCCCTCTCCTTTGTCTGCTGGATATGGACCCGCTCCGTGACCGCTC 902
Query 1067 AGATTG-TCGGTTCTGGGCT-CAAGGGTTTAGGTATTGGTTCGTTCGGTCTTGACTGGTC 1124
| | | ||||||| ||| | | | ||| | || ||||| || || ||||| || |||||
Sbjct 903 A-ACAGATCGGTTCAGGGTTGC-ACGGTCTCGGCATTGGCTCATTTGGTCTCGATTGGTC 960
Query 1125 CACAGTTGCTGGTTTCTTAGGCAGTCCGTTGGCTGTACCATTCTTCGCCATTGCCAATTT 1184
||| ||||| ||||||||||||||||| || |||||||| |||||||| || |||||||
Sbjct 961 CACGGTTGCAGGTTTCTTAGGCAGTCCTTTAGCTGTACCGTTCTTCGCTATAGCCAATTC 1020
Query 1185 CTTTGGAGGATTCT-TCATCTTTTTATACATTGTTCTACCTATCTTCTACTGGA-CTAAT 1242
|||||| ||||| | ||||||| || ||||| | || |||||||||||||||| | ||
Sbjct 1021 CTTTGGCGGATT-TGTCATCTTCTTCTACATCATCCTTCCTATCTTCTACTGGAGC-AAC 1078
Query 1243 GCTTATGATGCTCAGAAGTTTCCGTTCTATACTTCACACACCTTTGATCAGACTGGACAC 1302
||||| || || |||||||||| || ||||| || ||| | |||||||| ||||| ||
Sbjct 1079 GCTTACGAGGCAAAGAAGTTTCCTTTTTATACCTCTCACGCATTTGATCACACTGGTCA- 1137
Query 1303 AC-CTATAACATTACCCGTATCCTCAATGAGAAGA-ATTTCGATATCAATCTAGACGCTT 1360
| || |||| || ||||||||||| | || | |||| ||||| |||| |||||
Sbjct 1138 GCGTTACAACACCACTCGTATCCTCAACCATAAAACATTT-GATATTGATCTTCCCGCTT 1196
Query 1361 AC-AACGGTTACAGCAAGCTCTA-TTTGAGTGTGATGTTCGCGT-TGCTCTATGGACTCA 1417
|| || | || |||||||| || || || | |||| || | || | ||||||||||
Sbjct 1197 ACGAA-AGCTATAGCAAGCTTTACCTT-AGCATTCTGTTTGC-TCTGATTTATGGACTCA 1253
Query 1418 GCTTTGGTTCTCTTTGCGCTACCATCTCTCATGTTGCCCTCTATGATGGAAAGTTTATAT 1477
|||| || | ||| ||| ||||| ||||| || ||||||| ||| ||||||||||| |
Sbjct 1254 GCTTCGGCACCCTTACCGCAACCATTTCTCACGTCGCCCTCTTTGACGGAAAGTTTAT-T 1312
Query 1478 GGGGA-ATGTGGAAGAAGGCAAAGA-CAGCAACAAAGGACAAGTACGGTGACGTGCATTC 1535
|||| ||||||||||||| || | || ||||||||||||| || || |||||| |
Sbjct 1313 TGGGAGCTGTGGAAGAAGGC-AACATTGGCGACAAAGGACAAGTTTGGAGATGTGCATAC 1371
Query 1536 GAGATTGATGAAGAAGAATTATCAA-TCAGTACCTCAATGGTGGTTCATCGCAGTTCTAG 1594
||| ||||||||||||||||| || ||||||||||||||||||| | || ||||| |
Sbjct 1372 AAGACTGATGAAGAAGAATTAT-AAGGAAGTACCTCAATGGTGGTTCGTAGCGGTTCTCG 1430
Query 1595 TTATTTCCTTTGCT-TTCGCACTCTATGCTTGCGAGGGCTTTGACAAACAGCTTCAGCTC 1653
| ||||||||| | | || || || || || ||||| |||| |||||||||||||||
Sbjct 1431 CTGTTTCCTTTG-TGCTAGCTCTTTACGCATGTGAGGGATTTGGCAAACAGCTTCAGCTT 1489
Query 1654 CCATGGTGGGGACTTATACTCGCTTGCGCCATCG-CTTTGTTCTTCACATTACCTATCGG 1712
|| |||||||||||| |||||||||||||||||| |||| |||||| || ||||| ||
Sbjct 1490 CCGTGGTGGGGACTTCTACTCGCTTGCGCCATCGCCTTT-ACCTTCACTTTGCCTATTGG 1548
Query 1713 AGTTATCCAAGCAACTACTAACCAGCAAATGGGTCTTAACGTTATAACAGAACTGATCAT 1772
|||||||| |||||| || |||||| ||||||||||||| |||||| | |||||||||||
Sbjct 1549 AGTTATCCTAGCAACCACAAACCAGAAAATGGGTCTTAATGTTATATCGGAACTGATCAT 1608
Query 1773 CGGGTACTTATACCCAGGAAAGCCACTAGCCAATGTCG-CTTTCAAGACATACGGATAC- 1830
|||| ||| || || ||||||||||| |||||||| | |||| ||||| || || |||
Sbjct 1609 AGGGTTCTTGTATCCGGGAAAGCCACTTGCCAATGT-GACTTTTAAGACTTATGG-TACT 1666
Query 1831 ATCAGTATGTCTCAAGCCTTGTACTTTGTAGGAGACTTCAAGCTTGGTCACTACATGAAG 1890
| |||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1667 GTGAGTATGTCTCAAGCCTTGAACTTTGTGGGAGACTTCAAACTTGGCCACTACATGAAG 1726
Query 1891 ATTCCTCCAAGATCAATGTTCATCGTCCAGCTTGTTGCAACTGTGGTTGCATCAACTGTC 1950
|||||||| ||||| |||||| |||| || || ||||| ||| | ||||| |||||||||
Sbjct 1727 ATTCCTCCGAGATCTATGTTCCTCGTTCAACTCGTTGCGACTATTGTTGCTTCAACTGTC 1786
Query 1951 TGCTTCGGAACAACCTGGTGGCT-CATTACATCCGTCGAGAACATATGTAATGTC-GATT 2008
| ||| || || || |||||||| | || | || ||||||||||| ||||| | |||
Sbjct 1787 TCCTTTGGGACCACATGGTGGCTGC-TTTCTTCAGTCGAGAACATCTGTAA-CACAGATA 1844
Query 2009 TGCTCCCGGTGGGTAGTCCATGGACTTGTCCTGGAGATGAAGTGTTCTACAATGCATCAA 2068
|||||| | ||||||| |||||||| |||||||||||||| |||||||| || ||||
Sbjct 1845 AGCTCCCAAAGAGTAGTCCGTGGACTTGCCCTGGAGATGAAGTATTCTACAACGCGTCAA 1904
Query 2069 TCATATGGGGAGTGATTGGTCCAGGGAGAATGTTTACCAAAG--AAGGTATCTATCCCGG 2126
|||| |||||| | || ||||| || || ||||| | | ||| ||||| | || |||||
Sbjct 1905 TCATTTGGGGAATCATCGGTCCTGGAAGGATGTTCA-C-AAGTAAAGGTGTTTACCCCGG 1962
Query 2127 GATGAACTGGTTCTTCCTTATCGGTCTCCTCGCTCCAGTTCCCT-TCTGGTACCTAT-CG 2184
|||||||||||||||||| || || ||||| ||||| || ||| |||||| | | | |
Sbjct 1963 GATGAACTGGTTCTTCCTCATTGGCCTCCTTGCTCCTGT-CCCGGTCTGGTTCTT-TGC- 2019
Query 2185 AAG-AAGTTCCCAGAGAAGAAATGGCTAAAACAGATCCATGTTCCCTTGATCTTCTCTGC 2243
||| || ||||| |||||||| ||| || | | || ||| |||||||||||||||| |
Sbjct 2020 AAGGAAATTCCCGGAGAAGAAGTGGATACAGCTTATTCATATTCCCTTGATCTTCTCAGG 2079
Query 2244 AG-TAA-GCGCCATGCCACAAG-CTAAGGCTGTGCATTACTGGTCCTGGGCCATCGTTGG 2300
| ||| ||| |||||| | | | |||||||||||||||||||| ||| | | || ||
Sbjct 2080 GGCTAATGCG--ATGCCA-ATGGCCAAGGCTGTGCATTACTGGTCGTGGTTCGTTGTCGG 2136
Query 2301 GGTTGTGTTCAACTACTACATCTTCAGGAGGTTCAAAACTTGGTGGGCGAGGCACAATTA 2360
| | |||||||||||||| ||||||||||||| |||| |||||||| ||||| || ||
Sbjct 2137 GATCGTGTTCAACTACTATATCTTCAGGAGGTACAAAGGGTGGTGGGCAAGGCATAACTA 2196
Query 2361 CATCCTCTCTGCGGCGCTTGATGCAGGTACTGCGATTATGGGAGTGTTGATATTCTTCGC 2420
|||||||||||| || ||||||||||| || |||||||||||||||||||| | ||| |
Sbjct 2197 CATCCTCTCTGCAGCTCTTGATGCAGGCACAGCGATTATGGGAGTGTTGATCTACTTTAC 2256
Query 2421 ATTCCAGAACAATGATATAAGCTTACCTGATTGGTGGGGGCTTGAGAATTCAGACCATTG 2480
|| ||||||||| | ||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 2257 GTTGCAGAACAATAACATAAGCTTACCAGATTGGTGGGGGAATGAGAACACAGACCATTG 2316
Query 2481 CCCTCTAGCGCATTGCCC 2498
|||| | || |||||||
Sbjct 2317 CCCTTTGGCAAATTGCCC 2334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106424144530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5