BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55940.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950246 jgi|Araly1|950246|scaffold_802133.1 1391 0.0
Ahg940756 jgi|Araly1|940756|scaffold_601300.1 267 2e-70
Ahg946045 jgi|Araly1|946045|scaffold_702274.1 231 6e-60
> Ahg950246 jgi|Araly1|950246|scaffold_802133.1
Length=849
Score = 1391 bits (753), Expect = 0.0
Identities = 818/850 (96%), Gaps = 1/850 (0%)
Strand=Plus/Plus
Query 132 GTGAGTCGCCGATCGAGTTAGAAATGGGAATGGGAAGTAACGGAGAATTGAAGTATGAGA 191
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1 GTGAGTCGCCGATCGAGTTAGAGATGGGGATGGGAAGTAACGGCGAATTGAAGTATGAGA 60
Query 192 TCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAAGACGGCGGCGG 251
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCTCCCAGAACGCGTACATCAAACTCGTTCTCCACTCGCTGCGACACAAGACGGCGGCGG 120
Query 252 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 180
Query 312 ATTCTGTGCCGCTCTTTCACTCTAACCTCGCTCTCCTTCCTCCTCTCGAGATCTCCCTCA 371
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 181 ATTCTGTGCCGCTCTTTCACTCTAACCTTGCTCTCCTCCCTCCTCTCGAGATCTCCCTCA 240
Query 372 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCACGCAA 300
Query 432 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTT 491
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 301 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAGAACATTGGCGATCACATCT 360
Query 492 CTCGCTATTTCCCTCAGGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 551
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGCTATTTCCCTCAAGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 420
Query 552 CAAAGGGTAAAGAGCGAAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 611
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAGGGTAAAGAGCGTAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 480
Query 612 GGAGAGTAGTTGGAGCAGATGGAGGAAGCAAGCTACTCTTAAAAGAGCCATCGGCCAATG 671
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 GGAGAGTGGTTGGAGCAGATGGAGGAAGCAAGCTACTGTTAAAAGAGCCATCGGCCAATG 540
Query 672 TAGTTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 731
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAATTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 600
Query 732 ATCTTGATGATGTAACAAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGGGTAT 791
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 ACCTTGATGATGTTACCAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGTGTAT 660
Query 792 GCGACATAGCTAAACTAGACTTTTGCTTTCATCATCTTCTGTCGaaaaacaaaaaaGTTC 851
|||| ||||||||| ||||||||||||||||||||| || ||| |||||||||||| |||
Sbjct 661 GCGATATAGCTAAATTAGACTTTTGCTTTCATCATCGTCAGTCTAAAAACAAAAAA-TTC 719
Query 852 TCGGAGACCATTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTATGCAA 911
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TCGGAGACCCTTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTACACAG 779
Query 912 CAGAGCTCAAATTACTTTTAATTGGTACACATCTTAAACCTTAGTTATATCATTTGAATG 971
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 CAGAGCTCAAATCACTTTTAATTGGTACACATCTTAAACCTTAGTTTTATCATTTGAATG 839
Query 972 ATATCTTTTG 981
|||||| |||
Sbjct 840 ATATCTCTTG 849
> Ahg940756 jgi|Araly1|940756|scaffold_601300.1
Length=301
Score = 267 bits (144), Expect = 2e-70
Identities = 146/147 (99%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 377 ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG 155
Query 437 AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGC 496
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 156 AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCTCATTTCTCGC 215
Query 497 TATTTCCCTCAGGCACCAATTCTCTTG 523
|||||||||||||||||||||||||||
Sbjct 216 TATTTCCCTCAGGCACCAATTCTCTTG 242
> Ahg946045 jgi|Araly1|946045|scaffold_702274.1
Length=208
Score = 231 bits (125), Expect = 6e-60
Identities = 135/140 (96%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 384 AGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAGAGGTTTG 443
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 208 AGCATTATGTGGCTCAAGGTTTAAGTATTCTTGGATACTTTCATGCAAACGAGAGGTTTG 149
Query 444 ATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGCTATTTCC 503
|||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 148 ATGATGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCTCATTTCTCGTTATTTTC 89
Query 504 CTCAGGCACCAATTCTCTTG 523
||||||||||||||||||||
Sbjct 88 CTCAGGCACCAATTCTCTTG 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5