BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55940.1 Length=1039 Score E Sequences producing significant alignments: (Bits) Value Ahg950246 jgi|Araly1|950246|scaffold_802133.1 1391 0.0 Ahg940756 jgi|Araly1|940756|scaffold_601300.1 267 2e-70 Ahg946045 jgi|Araly1|946045|scaffold_702274.1 231 6e-60 > Ahg950246 jgi|Araly1|950246|scaffold_802133.1 Length=849 Score = 1391 bits (753), Expect = 0.0 Identities = 818/850 (96%), Gaps = 1/850 (0%) Strand=Plus/Plus Query 132 GTGAGTCGCCGATCGAGTTAGAAATGGGAATGGGAAGTAACGGAGAATTGAAGTATGAGA 191 |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 1 GTGAGTCGCCGATCGAGTTAGAGATGGGGATGGGAAGTAACGGCGAATTGAAGTATGAGA 60 Query 192 TCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAAGACGGCGGCGG 251 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 TCTCCCAGAACGCGTACATCAAACTCGTTCTCCACTCGCTGCGACACAAGACGGCGGCGG 120 Query 252 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 180 Query 312 ATTCTGTGCCGCTCTTTCACTCTAACCTCGCTCTCCTTCCTCCTCTCGAGATCTCCCTCA 371 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 181 ATTCTGTGCCGCTCTTTCACTCTAACCTTGCTCTCCTCCCTCCTCTCGAGATCTCCCTCA 240 Query 372 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAA 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 241 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCACGCAA 300 Query 432 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTT 491 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 301 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAGAACATTGGCGATCACATCT 360 Query 492 CTCGCTATTTCCCTCAGGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 551 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTCGCTATTTCCCTCAAGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 420 Query 552 CAAAGGGTAAAGAGCGAAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 611 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CAAAGGGTAAAGAGCGTAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 480 Query 612 GGAGAGTAGTTGGAGCAGATGGAGGAAGCAAGCTACTCTTAAAAGAGCCATCGGCCAATG 671 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 GGAGAGTGGTTGGAGCAGATGGAGGAAGCAAGCTACTGTTAAAAGAGCCATCGGCCAATG 540 Query 672 TAGTTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 731 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TAATTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 600 Query 732 ATCTTGATGATGTAACAAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGGGTAT 791 | ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| Sbjct 601 ACCTTGATGATGTTACCAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGTGTAT 660 Query 792 GCGACATAGCTAAACTAGACTTTTGCTTTCATCATCTTCTGTCGaaaaacaaaaaaGTTC 851 |||| ||||||||| ||||||||||||||||||||| || ||| |||||||||||| ||| Sbjct 661 GCGATATAGCTAAATTAGACTTTTGCTTTCATCATCGTCAGTCTAAAAACAAAAAA-TTC 719 Query 852 TCGGAGACCATTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTATGCAA 911 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 720 TCGGAGACCCTTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTACACAG 779 Query 912 CAGAGCTCAAATTACTTTTAATTGGTACACATCTTAAACCTTAGTTATATCATTTGAATG 971 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 780 CAGAGCTCAAATCACTTTTAATTGGTACACATCTTAAACCTTAGTTTTATCATTTGAATG 839 Query 972 ATATCTTTTG 981 |||||| ||| Sbjct 840 ATATCTCTTG 849 > Ahg940756 jgi|Araly1|940756|scaffold_601300.1 Length=301 Score = 267 bits (144), Expect = 2e-70 Identities = 146/147 (99%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 377 ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 ATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAG 155 Query 437 AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGC 496 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 156 AGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCTCATTTCTCGC 215 Query 497 TATTTCCCTCAGGCACCAATTCTCTTG 523 ||||||||||||||||||||||||||| Sbjct 216 TATTTCCCTCAGGCACCAATTCTCTTG 242 > Ahg946045 jgi|Araly1|946045|scaffold_702274.1 Length=208 Score = 231 bits (125), Expect = 6e-60 Identities = 135/140 (96%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 384 AGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAGAGGTTTG 443 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 208 AGCATTATGTGGCTCAAGGTTTAAGTATTCTTGGATACTTTCATGCAAACGAGAGGTTTG 149 Query 444 ATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGCTATTTCC 503 |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | Sbjct 148 ATGATGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCTCATTTCTCGTTATTTTC 89 Query 504 CTCAGGCACCAATTCTCTTG 523 |||||||||||||||||||| Sbjct 88 CTCAGGCACCAATTCTCTTG 69 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38656637838 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5