BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55960.1
Length=2422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950248 jgi|Araly1|950248|scaffold_802135.1 3182 0.0
Ahg952526 jgi|Araly1|952526|scaffold_84000001.1 1829 0.0
Ahg917283 jgi|Araly1|917283|Al_scaffold_0008_2034 710 0.0
> Ahg950248 jgi|Araly1|950248|scaffold_802135.1
Length=1989
Score = 3182 bits (1723), Expect = 0.0
Identities = 1900/1986 (96%), Gaps = 9/1986 (0%)
Strand=Plus/Plus
Query 139 AGAGA-TTGATCGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 197
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 8 AGAGATTTGATTGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCTAC 67
Query 198 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCTCGTAAACCTCAAGACCCTCC 257
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 68 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCGCGTAAACCTCAAGACCCTCC 127
Query 258 GTCTTCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCA---AGCAA 314
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 128 G---TCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCATCCGGCAA 184
Query 315 AACATCTTTATCAACCGTTGATTCCCAAGCCCGTCTCGCTATGTACATAGCAATGGCTCA 374
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 185 AACATCTTTATCAACCGCTGATTCACAAGCACGTCTCGCTATGTACATAGCAATGGCTCA 244
Query 375 CGCTGGTCTCGCTTTCGCCATTTGTGTTCTGTATTTCGTCGGAAAGCTATTACAAGAGTA 434
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 245 CGCTGGTCTCGTTTTCGCCATTTGTGTTCTGTATTTCGTTGGAAAGCTATTACAAGAGTA 304
Query 435 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCTTTACGAGGTATTCAAGAAAC 494
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCGTTACGAGGTATTCAAGAAAC 364
Query 495 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTTACGGAAGTTGTTCTCGCTGT 554
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 CCTTGTTGATTTCTGGAGTGAGCCTTTGAAATTAGGGCTAACGGAAGTTGTTCTCGCTGT 424
Query 555 TCCTGTTTCTGTCTTCAATGTTTTCATCGGGTCGATTGTGGATATTAAAAA-CGTCTGCT 613
|||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 425 TCCTGTTTCTGTCTTCAATGTTTTCATCGGATCCATTGTGGATATTAAAAATC-TCTGCT 483
Query 614 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGATACTGGGT 673
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 484 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGGTACTGGGT 543
Query 674 TTTCTAAACTGGTTAAATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 733
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTTCCAAATTGGTTAGATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 603
Query 734 TTGGTGGAATTGGGTCTCTTGTCATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 793
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 604 TTGGGGGAATTGGGTCTCTTGTGATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 663
Query 794 TTGATTCGTCTCTCTCTGCGGTCTCTTCTCTGAGGAGTAATAGTTTTAGGAGAAGCCATT 853
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 664 TCGATTCGTCTCTCTCTGCGGTTTCTTCTCTGAGGAGTAATAGTTTTAGGAGAAGCTATT 723
Query 854 TCACTGCTTATTTCACTAGAGGGATAATGACGAGATTGAATACTATAGTTGCTATTGGTT 913
|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 724 TCACTGCTTATTTCACTAGAGGGATAATGAAGAGATTGAATACAATTGTTGCTATTGGTT 783
Query 914 TGATTGTGCTCATGATTGTTGGATCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATTG 973
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 784 TGATTGTGCTTATGATTGTTGGTTCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATCG 843
Query 974 GTGTTGAAGGGAAAGATGCTGTTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACG 1033
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct 844 GTGTTGAAGGGAAAGACGCGGTTTATTCTTTAAAATCTCATGTTGAAGAGAGTAATTACG 903
Query 1034 CTGAGAAGATTGGGATCAAGCAATGGATGGATGAGAATGATGTTCCGGGAATGGTTGATA 1093
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 904 CTGAGAAGATTGGAATCAAGCAATGGATGGATGAGAATGATGTTCCTGGAATGGTGGATA 963
Query 1094 TGTATACAACGAAGTTTTATGAAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGT 1153
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGTATACGACGAAGTTTTATGAAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGT 1023
Query 1154 ATAATATGACGGAGTTAGTCACTGGGATTAAGCATTTTGTGATCGGGCATCCTCAGAACA 1213
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1024 ATAATATGACGGAGTTAGTCACGGGGATTAAGCATTTCGTGATCGGGCATCCTCAGAACA 1083
Query 1214 CGTCGACGCCTTCCACGGCGCTTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTT 1273
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CGTCGACACCATCTACGGCGCTTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTT 1143
Query 1274 TGAGGACTCGGGTTAAGAATCGAGAGTGGAGTCAGATATACTCGGAGGTTGATGTGATCT 1333
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1144 TGAGGACTCGGGTTAAGAATCGAGAATGGAGTCAGATCTACTCGGAGGTTGATGTGATTT 1203
Query 1334 TCAGGGAGCTTATTATCACTAGAGAAGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTA 1393
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1204 TCAGGGAGCTTATTATCACAAGAGAAGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTA 1263
Query 1394 AAGGAATGGATGTATCGCAACGGGTTTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTG 1453
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1264 AAGGAATGGATGTATCTCAACGGGTTTTCTCAAGCAGCGCATCAGTTGTTGGAGGCGGTG 1323
Query 1454 CTAAGTTCGTTTTCTCTATTGGAAACTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACT 1513
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1324 CTAAGTTCGTTTTCTCTATTGGAAACTTGATAATCTCGGGAGCAGCAGAGTTTTTCAACT 1383
Query 1514 TTATCTCTCAGCTAATGATTTTCATTTGGGTTTTATACATTCTTATCACATCAGAATCAG 1573
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1384 TTATCTCTCAGCTAATGGTTTTCATTTGGGTTTTATACATTCTAATCACATCAGAATCAG 1443
Query 1574 GCGGTGTGACTGAGCAAGTCATGAACATGCTCCCGATCAACGCAAGCGCTAGAAACAGAT 1633
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1444 GTGGTGTGACTGAGCAAGTCATGAACATGCTCCCGATCAACGCAAGTGCTAGAAACAGAT 1503
Query 1634 GTGTCGAAGTCTTAGACTTAGCGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCT 1693
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1504 GTGTCGAAGTCCTAGACTTAGCGATCTCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCT 1563
Query 1694 TCTTCCAAGGATGTCTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACA 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TCTTCCAAGGATGTCTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACA 1623
Query 1754 TGTCAACCGTTCTTGCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGA 1813
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1624 TGTCGACCGTTCTTGCCTTCATCAGTGCTCTGTTACCGATTTTCCCTTACTGGTTTGCGA 1683
Query 1814 CAATCCCAGCGGCTTTGCAGCTCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTAT 1873
||||||||||||||||||| || ||||||||||||||||| ||| ||||||| | | |||
Sbjct 1684 CAATCCCAGCGGCTTTGCAACTAGTGCTAGAAGGAAGATACATTATTGCAGTTACTCTAT 1743
Query 1874 CTGTGACTCATCTTGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTG 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 CTGTGACTCATCTTGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTG 1803
Query 1934 GGTCCAATGCTTACCTTACTGGACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTG 1993
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1804 GGTCCAATGCTTACATTACTGGACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTG 1863
Query 1994 CTCTAGAGGGAGCGATAATGGGGCCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATC 2053
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1864 CTCTCGAGGGAGCGATAATGGGACCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATC 1923
Query 2054 TGTATGCAGAGTTTGTTCTGAATGAGCCAAAGAAGATCAATTAGTTGTTATTGGTTTCTT 2113
| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 1924 TATATGCAGAGTTTGTTCTGAATGATCCAAAGAAGATCAATTAGATCTTATTGGTTTCTT 1983
Query 2114 TAATAG 2119
| ||||
Sbjct 1984 TGATAG 1989
> Ahg952526 jgi|Araly1|952526|scaffold_84000001.1
Length=1868
Score = 1829 bits (990), Expect = 0.0
Identities = 1082/1128 (96%), Gaps = 0/1128 (0%)
Strand=Plus/Plus
Query 875 GGATAATGACGAGATTGAATACTATAGTTGCTATTGGTTTGATTGTGCTCATGATTGTTG 934
||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 700 GGATAATGAAGAGATTGAATACAATTGTTGCTATTGGTTTGATTGTGCTTATGATTGTTG 759
Query 935 GATCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATTGGTGTTGAAGGGAAAGATGCTG 994
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 760 GTTCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATCGGTGTTGAAGGGAAAGATGCGG 819
Query 995 TTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACGCTGAGAAGATTGGGATCAAGC 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 820 TTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACGCTGAGAAGATTGGAATCAAGC 879
Query 1055 AATGGATGGATGAGAATGATGTTCCGGGAATGGTTGATATGTATACAACGAAGTTTTATG 1114
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 880 AATGGATGGATGAGAATGATGTTCCTGGAATGGTGGATATGTATACGACGAAGTTTTATG 939
Query 1115 AAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGTATAATATGACGGAGTTAGTCA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGTATAATATGACGGAGTTAGTCA 999
Query 1175 CTGGGATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCGACGCCTTCCACGGCGC 1234
| |||||||||||||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct 1000 CGGGGATTAAGCATTTCGTGATCGGGCATCCTCAGAACACGTCGACACCATCTACGGCGC 1059
Query 1235 TTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATC 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATC 1119
Query 1295 GAGAGTGGAGTCAGATATACTCGGAGGTTGATGTGATCTTCAGGGAGCTTATTATCACTA 1354
|||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1120 GAGAATGGAGTCAGATCTACTCGGAGGTTGATGTGATTTTCAGGGAACTTATTATCACAA 1179
Query 1355 GAGAAGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAAC 1414
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1180 GAGAAGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCTCAAC 1239
Query 1415 GGGTTTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTG 1474
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1240 GGGTTTTCTCAAGCAGCGCATCAGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTG 1299
Query 1475 GAAACTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGATTT 1534
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1300 GAAACTTGATAATCTCGGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGGTTT 1359
Query 1535 TCATTTGGGTTTTATACATTCTTATCACATCAGAATCAGGCGGTGTGACTGAGCAAGTCA 1594
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1360 TCATTTGGGTTTTATACATTCTAATCACATCAGAATCAGGTGGTGTGACTGAGCAAGTCA 1419
Query 1595 TGAACATGCTCCCGATCAACGCAAGCGCTAGAAACAGATGTGTCGAAGTCTTAGACTTAG 1654
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1420 TGAACATGCTCCCGATCAACGCAAGTGCTAGAAACAGATGTGTCGAAGTCCTAGACTTAG 1479
Query 1655 CGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGTCTCACTT 1714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 CGATCTCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGTCTCACTT 1539
Query 1715 GGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCAACCGTTCTTGCCTTCA 1774
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1540 GGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCGACCGTTCTTGCCTTCA 1599
Query 1775 TCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCTTTGCAGC 1834
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1600 TCAGTGCTCTGTTACCGATTTTCCCTTACTGGTTTGCGACAATCCCAGCGGCTTTGCAAC 1659
Query 1835 TCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTATCTGTGACTCATCTTGTGCTAA 1894
| ||||||||||||||||| ||| ||||||| | | ||||||||||||||||||||||||
Sbjct 1660 TAGTGCTAGAAGGAAGATACATTATTGCAGTTACTCTATCTGTGACTCATCTTGTGCTAA 1719
Query 1895 TGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTACCTTACTG 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1720 TGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTACATTACTG 1779
Query 1955 GACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTGCTCTAGAGG 2002
|||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1780 GACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTGCTCTCGAGG 1827
Score = 1118 bits (605), Expect = 0.0
Identities = 668/697 (96%), Gaps = 9/697 (1%)
Strand=Plus/Plus
Query 139 AGAGA-TTGATCGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 197
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AGAGATTTGATTGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 67
Query 198 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCTCGTAAACCTCAAGACCCTCC 257
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 68 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCGCGTAAACCTCAAGACCCTCC 127
Query 258 GTCTTCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCAA--G-CAA 314
|||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 128 GTCTTCTTCTTC---ATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCATCCGGCAA 184
Query 315 AACATCTTTATCAACCGTTGATTCCCAAGCCCGTCTCGCTATGTACATAGCAATGGCTCA 374
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 185 AACATCTTTATCAACCGCTGATTCACAAGCACGTCTCGCTATGTACATAGCAATGGCTCA 244
Query 375 CGCTGGTCTCGCTTTCGCCATTTGTGTTCTGTATTTCGTCGGAAAGCTATTACAAGAGTA 434
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 245 CGCTGGTCTCGTTTTCGCCATTTGTGTTCTGTATTTCGTTGGAAAGCTATTACAAGAGTA 304
Query 435 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCTTTACGAGGTATTCAAGAAAC 494
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCGTTACGAGGTATTCAAGAAAC 364
Query 495 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTTACGGAAGTTGTTCTCGCTGT 554
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTAACGGAAGTTGTTCTCGCTGT 424
Query 555 TCCTGTTTCTGTCTTCAATGTTTTCATCGGGTCGATTGTGGATATTAAAAA-CGTCTGCT 613
|||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 425 TCCTGTTTCTGTCTTCAATGTTTTCATCGGATCCATTGTGGATATTAAAAATC-TCTGCT 483
Query 614 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGATACTGGGT 673
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 484 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGGTACTGGGT 543
Query 674 TTTCTAAACTGGTTAAATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 733
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTTCCAAATTGGTTAGATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 603
Query 734 TTGGTGGAATTGGGTCTCTTGTCATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 793
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 604 TTGGGGGAATTGGGTCTCTTGTGATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 663
Query 794 TTGATTCGTCTCTCTCTGCGGTCTCTTCTCTGAGGAG 830
| |||||||||||||||||||| ||||||||||||||
Sbjct 664 TCGATTCGTCTCTCTCTGCGGTTTCTTCTCTGAGGAG 700
> Ahg917283 jgi|Araly1|917283|Al_scaffold_0008_2034
Length=906
Score = 710 bits (384), Expect = 0.0
Identities = 429/451 (95%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 1648 GACTTAGCGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGT 1707
||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 457 GACTTAGCGATCTCCGACGTGCTTTTAGCAACAGCGAAAATTGCCTTCTTCCAAGGATGT 516
Query 1708 CTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCAACCGTTCTT 1767
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 517 CTCACTTGGCTATTATTTAGACTATACAATATACATTTCCTTTATATGTCAACCGTTCTC 576
Query 1768 GCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCT 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCT 636
Query 1828 TTGCA-GCTCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTATCTGTGACTCATCT 1886
||||| | ||||||||||||||||||| ||||||||||| | | ||||||||||||||||
Sbjct 637 TTGCAAG-TCGTGCTAGAAGGAAGATACATTGTTGCAGTAACTCTATCTGTGACTCATCT 695
Query 1887 TGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTA 1946
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 696 TGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCAGGGTCCAATGCTTA 755
Query 1947 CCTTACTGGACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTGCTCTAGAGGGAGC 2006
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 756 CATTACTGGACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTGCTCTCGAGGGAGC 815
Query 2007 GATAATGGGGCCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATCTGTATGCAGAGTT 2066
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 816 GATAATGGGGCCGTTGATAACAACGGTTGTGATTGCTTTGAAGGATCTGTATGCAGAGTT 875
Query 2067 TGTTCTGAATGAGCCAAAGAAGATCAATTAG 2097
|||||||||||| ||||||||||| | ||||
Sbjct 876 TGTTCTGAATGATCCAAAGAAGATTAGTTAG 906
Score = 625 bits (338), Expect = 5e-178
Identities = 378/398 (95%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 1179 GATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCGACGCCTTCCACGGCGCTTAT 1238
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 60 GATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCAACTCCATCCACGGCGCTTAT 119
Query 1239 AACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATCGAGA 1298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATCGAGA 179
Query 1299 GTGGAGTCAGATATACTCGGAGGTTGATGTGATCTTCAGGGAGCTTATTATCACTAGAGA 1358
||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 180 ATGGAGTCAGATTTACTCGGAGGTCGATGTGATTTTCAGGGAGCTTATTATCACAAGAGA 239
Query 1359 AGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAACGGGT 1418
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAAAGGGT 299
Query 1419 TTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTGGAAA 1478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCTCAAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTGGAAA 359
Query 1479 CTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGATTTTCAT 1538
|||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 360 CTTGATAATCTCGGGAGTAGCAGAGATTTTCAACTTTATCTCTCAGCTAATGGTTTTTAT 419
Query 1539 TTGGGTTTTATACATTCTTATCACATCAGAATCAGGCG 1576
|||| ||||||||||||| |||||||||||||||||||
Sbjct 420 TTGGATTTTATACATTCTAATCACATCAGAATCAGGCG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264227020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5