BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55980.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950253 jgi|Araly1|950253|scaffold_802140.1                        538    1e-152


> Ahg950253 jgi|Araly1|950253|scaffold_802140.1
Length=385

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 325/342 (95%), Gaps = 0/342 (0%)
 Strand=Plus/Plus

Query  1    ATGACGAAAGAAAACCCTTCAACCCTAAATCTCGGACAACCTAAGGCACAAGAAAAGTAT  60
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct  22   ATGACGAAAGAAAACCCTTCAACCCTAAATCTCGGACAACCTACGACGCAAGAAAAGTAT  81

Query  61   TCCACAAGTTTAGCCAAGATCAACCCTAAACCCTCCGGTAGCTCTACCGTTGAATCGAAG  120
            ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  82   TCCACAAGTTTAGCCAAGATCAACCCTAAACCCTCCGATGGCTCTACCGTTGAATCGAAG  141

Query  121  AGCCAAGACAATAACTCACCTAGTTTAAAACGTTGGAGATCGTCCTCCGGTAAATCTACG  180
            || |||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct  142  AGGCAAGACCATAACTCACCGAGTTTAAAACGTTGGAGATCGTCCTCCGGTAAACCGACG  201

Query  181  AGGCTAAATTGTTTATGTTCTCCGACGACACACGCCGGTTCTTTCAGGTGCAGGTATCAC  240
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  202  AGGCAAAATTGTCTATGTTCTCCGACGACACACGCCGGTTCTTTCAGGTGCAGGTACCAC  261

Query  241  CGCGTTGATTCGTTGACACGTGCCGGGTCTATTGGGTCGAACCTCGCTGTTTTATTGTCG  300
            |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| 
Sbjct  262  CGCGTTGATTCGTTGACACGTGTCGGGTCTATTGGGTCGAACCTCGCGGTGTTATTGTCA  321

Query  301  TCCAAGTCGAGCCGGTTTAGTGACTCCCTCAAGGCTCAGTAA  342
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  TCCAAGTCGAGCCGGTTTAGTGACTCCCTCAAGGCTCAGTAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5