BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55990.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950254 jgi|Araly1|950254|scaffold_802141.1 1177 0.0
Ahg492151 jgi|Araly1|492151|fgenesh2_kg.7__1584__AT4G26570.2 763 0.0
Ahg495679 jgi|Araly1|495679|fgenesh2_kg.8__1495__AT5G55990.1 743 0.0
> Ahg950254 jgi|Araly1|950254|scaffold_802141.1
Length=721
Score = 1177 bits (637), Expect = 0.0
Identities = 679/700 (97%), Gaps = 0/700 (0%)
Strand=Plus/Plus
Query 182 TATATCATGTCGCAGTGCGTTGACGGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGT 241
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 15 TATATCATGTCGCAGTGCGTTGACGGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGT 74
Query 242 TTTGATCTTGATTTGTATAAACAATCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGA 301
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 75 TTTGATCTTGATTTGTATAAACAATCCGGTGGTCTTGGAGATCCTGAATTGCTTGCAAGA 134
Query 302 GACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGC 361
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 135 GACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTGTTTAAGAAAATTAGC 194
Query 362 AGTGCCGTGATTGATGATGGGCTAATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAG 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 AGTGCCGTGATTGATGATGGGCTTATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAG 254
Query 422 ACAAATAAAAAAGAGAGTTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAGCAC 481
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 255 ACAAATAAAAAAGAGAGCTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAACAC 314
Query 482 AATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCG 541
||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 315 AATGGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTATTTCACCCAAATGCG 374
Query 542 CCTATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTT 601
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CCTATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTC 434
Query 602 ATCGAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ATCGAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAAT 494
Query 662 TTGAAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAA 721
||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 495 TTGAAGGATACTGTCATAGAGAACATAATCGATAAGACGTTTGAGGAAGCAGACACAAAA 554
Query 722 CACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTT 614
Query 782 CTGAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTG 841
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTGAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTG 674
Query 842 TTCCATTCTCAGGTTGAAGATACCTGAAAAAGCAAAAGCA 881
||||||||||||||||||||||||||||||| ||||||||
Sbjct 675 TTCCATTCTCAGGTTGAAGATACCTGAAAAAACAAAAGCA 714
> Ahg492151 jgi|Araly1|492151|fgenesh2_kg.7__1584__AT4G26570.2
Length=1033
Score = 763 bits (413), Expect = 0.0
Identities = 653/765 (85%), Gaps = 32/765 (4%)
Strand=Plus/Plus
Query 136 AGGAAATGGTTGAAAGGCATGGAGAGTTTTGATTTGCTGCTTAAGATATATCATGTCGCA 195
||||||||||| |||||||||||||||||||| || | | |||| |||||||||||||
Sbjct 169 AGGAAATGGTTAAAAGGCATGGAGAGTTTTGA-TT--TAC--AAGAGATATCATGTCGCA 223
Query 196 GTGCGTTGACGGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGTTTTGATCTTGAT-T 254
|||| | |||||| |||||||| ||||| ||||| |||| ||||||||||| | ||| |
Sbjct 224 GTGCATAGACGGTTTCAAGCATATATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATAT 283
Query 255 TGTATAAACAATCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTTTTA 314
| || ||||||||||| ||||||||||| |||||| ||||||| ||||| || |||||||
Sbjct 284 T-TACAAACAATCTGGAGGCCTTGGAGACCCTGAACTGCTTGCGAGAGAGACAGTTTTTA 342
Query 315 GTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGCAGTGCCGTGATTG 374
| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 343 GCGTGAGTGAAATAGAAGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTG 402
Query 375 ATGATGGGCTAATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAGACAAATAAAAAAG 434
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 403 ATGATGGGCTAATAAACAAGGAAGAGTTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAG 462
Query 435 AGAGTTTGTTTGCAGATCGGG-----T------T-TTCGATTTGTTTGATACAAAGCACA 482
|||| ||||||||||| ||| | | ||||||||||| || |||||||| |
Sbjct 463 AGAGCTTGTTTGCAGACCGGTACCAATCACAGGTATTCGATTTGTTCGACACAAAGCATA 522
Query 483 ATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGC 542
|||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| |
Sbjct 523 ATGGAATACTAGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTC 582
Query 543 CTATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTT- 601
| ||||| ||||| ||| ||||||| |||||||||||||||||||| |||||||| |||
Sbjct 583 CCATAGAAGACAAGATTGACTTTTCGTTTCAGCTATATGATCTTAAGCAGCAAGG-TTTC 641
Query 602 ATCGA-ACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAA 660
||||| | |||| |||||||| |||||||| || ||||| |||||||| ||||| |||||
Sbjct 642 ATCGAGA-GGCAGGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCTGGCATGAA 700
Query 661 TTTGA-AG--GATACTGTCATTGAG-GATATAATCGACAAGACGTTTGAGGAAGCAGACA 716
|| || || | | ||| ||| | ||||||||||||||| ||||||||||| ||||
Sbjct 701 CCTGTCAGACGAAA-T--CATAGAGAG-TATAATCGACAAGACATTTGAGGAAGCTGACA 756
Query 717 CAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCA 776
||||||| || || | ||||||||||||||||||||| | ||||||||| || |||||
Sbjct 757 CAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGGACCCTTGTTCTCAGGCATCCTT 816
Query 777 GCCTTCTGAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCT 836
|||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 817 CCCTTCTAAAGAACATGACTCTCCAATATCTTAAGGATATCACAACTACATTTCCAAGCT 876
Query 837 TTGTGTTCCATTCTCAGGTTGAAGATACCTGA-AAAAGCAAAAGC 880
|||||||||| || ||||| |||||||||||| |||| ||| |||
Sbjct 877 TTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGC 921
> Ahg495679 jgi|Araly1|495679|fgenesh2_kg.8__1495__AT5G55990.1
Length=922
Score = 743 bits (402), Expect = 0.0
Identities = 433/448 (97%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 425 AATAAAAAAGAGAGTTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAGCACAAT 484
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 235 AATAAAAAAGAGAGCTTGTTTGCAGATCGGGTTTTCGATTTCTTTGATACAAAACACAAT 294
Query 485 GGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCT 544
|||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 295 GGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTGTTTCACCCAAATGCACCT 354
Query 545 ATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTTATC 604
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 ATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTCATC 414
Query 605 GAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAATTTG 664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCCGGAATGAATTTG 474
Query 665 AAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAACAC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAACAC 534
Query 725 GATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCC-CAGCCTTCT 783
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 535 GATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACA-CCTCAGCCTTCT 593
Query 784 GAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTGTT 843
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 GAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTTTT 653
Query 844 CCATTCTCAGGTTGAAGATACCTGAAAA 871
||||||||||||||||||||||||||||
Sbjct 654 CCATTCTCAGGTTGAAGATACCTGAAAA 681
Score = 259 bits (140), Expect = 3e-68
Identities = 158/166 (95%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 150 AGGCATGGAGAGTTTTGATTTGCTGCTTAAGA----TATATCATGTCGCAGTGCGTTGAC 205
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AGGCATGGAGAGTTTTGATTTGCTGCTTAAGATCGTTATATCATGTCGCAGTGCGTTGAC 60
Query 206 GGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGTTTTGATCTTGATTTGTATAAACAA 265
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGTTTTGATCTTGATTTGTATAAACAA 120
Query 266 TCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTT 311
|| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGGTGGTCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5