BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56020.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495689 jgi|Araly1|495689|fgenesh2_kg.8__1505__AT5G56020.1 1269 0.0
Ahg492154 jgi|Araly1|492154|fgenesh2_kg.7__1587__AT4G26550.1 671 0.0
> Ahg495689 jgi|Araly1|495689|fgenesh2_kg.8__1505__AT5G56020.1
Length=803
Score = 1269 bits (687), Expect = 0.0
Identities = 761/797 (95%), Gaps = 4/797 (1%)
Strand=Plus/Plus
Query 97 CCGATTTCCTTAGCTCCGACGTAAACCACTGATCGTCGGTATTCAGCTATATTTTG-ATT 155
||||||| ||||||||||||||||||||| ||||| || |||||||| | ||| | | |
Sbjct 1 CCGATTTTCTTAGCTCCGACGTAAACCACCGATCGCCGATATTCAGC--T-TTTAGAAAT 57
Query 156 TCTCAGCTCCAAAAATTCCCAACGAAATGGAGAAAATGGCCAAAGGATGGTTTCCGATGA 215
|| ||| |||||||||||||||| |||||||||||||||| ||||| |||||| ||||||
Sbjct 58 TCCCAGTTCCAAAAATTCCCAACAAAATGGAGAAAATGGCGAAAGGTTGGTTTTCGATGA 117
Query 216 GCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGCAAACAGGAGGAACGTCTC 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGCAAACAGGAGGAACGTCTC 177
Query 276 TGCTAGCTGATTGGAATTCTTACGCAGCATCGAGAGATTTTGAAGAAGACACCGGAACTT 335
||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||
Sbjct 178 TGCTAGCTGATTGGAATTCCTACGCAGCTTCGAGAGATTTTGAAGAAGACCCCGGAGCTT 237
Query 336 TAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTTTCCGGCACCTTTA 395
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 238 TAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTCTCCGGAACCTTTA 297
Query 396 ATGTTGTTTCGAAAGGAGTTAGAGATAACCTGCAGTCTGCAACAAGTAGTATGCCTTCAG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGTTGTTTCGAAAGGAGTTAGAGATAACCTGCAGTCTGCAACAAGTAGTATGCCTTCAG 357
Query 456 GAAAAGCTTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGTATTCTTCATCTTCATTG 515
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 GAAAAGCGTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGTTTTCTTCATCTTCATTG 417
Query 516 CCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAAGTTTGCAATTTGTTTTA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAAGTTTGCAATTTGTTTTA 477
Query 576 CCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCGTGGCCCGCAAAATCAAC 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCGTGGCCCGCAAAATCAAC 537
Query 636 TCGCTCACATGTCATCGGCAGAGAGGCTTCCACTAACTTTAGGTTTCATTGCCACCATGG 695
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 538 TCGCTCACATGTCATCGGCAGAGAGGCTTCCTCTAACTTTAGGTTTCATAGCCACCATGG 597
Query 696 TTGGCACCATATATGTCTCGATGGTGCTCCATAGCTACATTCTCTCTGTGATTTTCTCTG 755
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 TTGGCACCATATATGTCTCGATGGTGCTCCATAGTTACATTCTCTCTGTGATTTTCTCTG 657
Query 756 CATTACAGGTTATTGCACTGGCGTACTACTGTATATCATATTTCCCTGGTGGATCATCGG 815
||||||||||| |||||||||| ||||||||| |||| || |||||||||||||||||||
Sbjct 658 CATTACAGGTTGTTGCACTGGCTTACTACTGTGTATCCTACTTCCCTGGTGGATCATCGG 717
Query 816 GAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGTCTTCCGAATGTTTGGGAGATGAG 875
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 GAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGTCTTCAGAATGTTTGGGAGATGAG 777
Query 876 CTTTCGCTTTGACCTAT 892
||||||| | || ||||
Sbjct 778 CTTTCGCCTCGATCTAT 794
> Ahg492154 jgi|Araly1|492154|fgenesh2_kg.7__1587__AT4G26550.1
Length=1029
Score = 671 bits (363), Expect = 0.0
Identities = 592/698 (85%), Gaps = 33/698 (5%)
Strand=Plus/Plus
Query 198 AAGGATGGTTTCCGATGAGCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGC 257
||||||||||| ||||| |||| ||||||||||||||||||||||||| | ||
Sbjct 143 AAGGATGGTTTTCGATGGGCGG---GAGTAGCAGCGGAGATCAGCAGCAGC-A-----GC 193
Query 258 AAACAGGAGGAACGTCTCTGCTAGCTGATTGGAATTCTTACGCAGCATCGAGAGATTTTG 317
|| | | || | |||||||| || |||||||||||||||||||| || |||||||| |
Sbjct 194 AATC--G-GGTTCATCTCTGCTCGCGGATTGGAATTCTTACGCAGCCTCTAGAGATTTCG 250
Query 318 AAG-AAGACACCGGAA-CTTTAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGA 375
| | ||| | ||||| | || || || ||||||||||||||||||||||||||||| ||
Sbjct 251 AGGAAAG-TAGCGGAAGC-TTCGGTTTTGATATCGAATCCGCCGTTAGATCTGCCAATGA 308
Query 376 CACTGTTTCCGGCACCTTTAATGTTGTTTCGAAA-GGAGTTAGAGATA--------A-CC 425
||||||||| |||||||| | ||| ||||| ||| ||||||||||||| | ||
Sbjct 309 CACTGTTTCTGGCACCTTCAGTGTGGTTTC-AAAGGGAGTTAGAGATATCCCGGGGAGCC 367
Query 426 TGCAGTCTGCAACAAGTAGTATGCCTTCAGGAAAAGCTTTGATGTATTTCGGTTTACTTC 485
||||||| ||||| || |||||||||||||||||||| | |||||||||||||||||||
Sbjct 368 TGCAGTCAGCAACCAGCAGTATGCCTTCAGGAAAAGCGCTCATGTATTTCGGTTTACTTC 427
Query 486 TAGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACCATGTTTCTTCCAGTCATGGTGC 545
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 428 TCGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACAATGTTTCTTCCAGTCATGGTGC 487
Query 546 TTATGCCACAGAAGTTTGCAATTTGTTTTACCCTTGGATGTGGATTTATCATCGGATCTT 605
||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 488 TTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGTGGATTTATCATTGGATCCT 547
Query 606 TCTTCGCTCTTCGTGGCCCGCAAAATCAACTCGCTCACATGTCATCGGCAGAGAGGCTTC 665
||||||| ||||||||||| |||| || ||||| |||||||||||| ||||||||||
Sbjct 548 TCTTCGCACTTCGTGGCCCAAAAAACCAGCTCGCACACATGTCATCGATGGAGAGGCTTC 607
Query 666 CA-CTAACTTTAGGTTTCATTGCCACCATGGTTGGCACCATATATGTCTCGATGGTGCTC 724
| | ||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 608 CTTC-AACCCTAGGTTTCATTGCCACCATGGTTGGTACCATATATGTATCGATGGTTCTC 666
Query 725 CATAGCTACATTCTCTCTGTGATTTTCTCTGCATTACAGGTTATTGCACTGGCGTACTAC 784
|| |||||||||||||| ||| | ||||||| ||||||||| ||||||||| || |||
Sbjct 667 CACAGCTACATTCTCTCGGTGCTCTTCTCTGTGTTACAGGTTCTTGCACTGGTTTATTAC 726
Query 785 TGTATATCATATTTCCCTGGTGGATCATCGGGAATGAAGTTCCTCAGTTCTACTCTTACC 844
|||||||| || ||||||||||||||||| || |||| ||||||||||||| |||| |||
Sbjct 727 TGTATATCCTACTTCCCTGGTGGATCATCCGGCATGAGGTTCCTCAGTTCTGCTCTCACC 786
Query 845 TCCTCTGTC-TTCCGAATGTTT-GGGAGATGAGCTTTC 880
|| || | | || || | ||| |||||||||||||||
Sbjct 787 TCATCGG-CGTTAAGAGT-TTTCGGGAGATGAGCTTTC 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5