BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56040.2
Length=3663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917292 jgi|Araly1|917292|Al_scaffold_0008_2043 5131 0.0
Ahg945418 jgi|Araly1|945418|scaffold_701647.1 2030 0.0
> Ahg917292 jgi|Araly1|917292|Al_scaffold_0008_2043
Length=3273
Score = 5131 bits (2778), Expect = 0.0
Identities = 3116/3281 (95%), Gaps = 16/3281 (0%)
Strand=Plus/Plus
Query 173 ATGCCACGTAACCCTAGAttctgcttcttcctcttccttctttttcactcctctcttttc 232
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 ATGCCACGTAACCCTAGATTCTGCTTCTTCCTCTTCCTTCTCTTTCACTCCTCTGTTTTC 60
Query 233 ttc-tccatcccctgtttttccATAGACGAACAGGGTCTAGCTCTCCTCTCATGGAAATC 291
||| | || ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TTCAT-CACCCCCTGTTTCTCCATAGACGAACAAGGTCTAGCTCTCCTCTCATGGAAATC 119
Query 292 TCAGTTGAACATCTCCGGAGACGCTTTATCTTCTTGGAAAGCCTCCGAATCGAATCCTTG 351
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAGTTAAACATCTCCGGAGACGCTTTATCTTCTTGGAAAGCCTCCGAATCGAATCCTTG 179
Query 352 TCAATGGGTGGGAATCAAATGCAACGAAAGAGGTCAAGTCTCGGAGATACAACTCCAAGT 411
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAATGGGTCGGAATCAGATGCAACGAAAGAGGTCAAGTCTCGGAGATACAACTCCAAGT 239
Query 412 CATGGATTTTCAAGGTCCGTTACCGGCGACGAATCTCCGACAGATAAAGTCTCTGACTTT 471
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 240 CATGGATTTTCAAGGTCCGTTACCGGCGACGAATCTCCGGCAGTTAAAGTCTCTGACTTT 299
Query 472 GCTCAGCTTAACCTCCGTGAATCTCACTGGTTCAATCCCTAAGGAGCTTGGAGACTTGTC 531
||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 300 ACTCAGTTTAACCTCCGTGAATCTCACCGGTTCAATTCCTAAAGAGCTTGGAGACTTGTC 359
Query 532 GGAGCTAGAAGTTCTTGATTTAGCTGATAATTCTCTCTCTGGTGAAATCCCTGTGGATAT 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 360 GGAGCTAGAAGTTCTTGATTTAGCTGATAATTCTCTCTCTGGTGAAATCCCAGTGGAAAT 419
Query 592 CTTCAAGCTCAAGAAACTAAAGATTCTGTCTCTCAACACAAATAATCTCGAAGGTGTGAT 651
|||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 420 CTTCAAGCTCAAGAAACTCAAGACTCTGTCTCTCAACACAAACAATCTCGAAGGTGTGAT 479
Query 652 TCCATCGGAGTTAGGGAATCTCGTTAACCTCATCGAGCTCACTCTCTTCGACAATAAACT 711
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 480 TCCATCGGAGTTAGGGAATCTCGTGAACCTCGTCGAGCTCACTCTCTTCGACAATAAACT 539
Query 712 CGCCGGAGAGATTCCTAGAACCATCGGAGAACTCAAGAATCTAGAAATCTTCCGTGCAGG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGCCGGAGAGATTCCTAGAACCATCGGAGAACTCAAGAATCTAGAAATCTTCCGTGCAGG 599
Query 772 TGGTAACAAGAATCTCAGAGGAGAGCTTCCTTGGGAGATTGGTAACTGCGAGAGTCTTGT 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGGAACAAGAATCTCAGAGGAGAGCTTCCTTGGGAGATTGGTAACTGCGAGAGTCTTGT 659
Query 832 GACTTTAGGTCTCGCCGAAACAAGTCTCTCCGGTAGACTTCCGGCGTCGATCGGAAACCT 891
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 660 GACTTTAGGTCTCGCCGAAACAAGTCTCTCCGGTAAACTTCCGGAGTCGATCGGAGACCT 719
Query 892 GAAAAAGGTTCAGACAATAGCTCTTTACACGTCACTCTTGTCTGGTCCAATCCCTGATGA 951
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 720 GAAAAAAGTTCAGACAATAGCCCTGTACACGTCACTCTTGTCTGGTCCAATCCCTGATGA 779
Query 952 GATTGGAAACTGCACAGAGCTTCAAAACCTCTACTTGTACCAAAACTCAATCTCTGGATC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATTGGAAACTGCACAGAGCTTCAAAACCTCTACTTGTACCAAAACTCAATCTCTGGATC 839
Query 1012 GATTCCTGT-ATCAATGGGACGTCTCAAGAAGCTTCAAAGTCTTCTCTTATGGCAAAACA 1070
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATTCCT-TCATCACTGGGACGTCTCAAGAAGCTTCAAAGTCTTCTCTTATGGCAAAACA 898
Query 1071 ATCTCGTCGGAAAGAT-CCCTACCGAGCTAGGCACCTGTCCGGAGCTTTTCCTCGTCGAT 1129
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCTCGTCGGAAAAATACCC-ACCGAGCTAGGCACCTGTCCGGAGCTTTTCCTCGTCGAT 957
Query 1130 TTATCGGAAAATCTCCTCACCGGAAACATCCCAAGAAGCTTCGGAAACCTTCCAAATCTC 1189
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTATCTGAAAATCTTCTCACCGGAAACATCCCAAGAAGCTTCGGAAACCTTCCAAATCTC 1017
Query 1190 CAAGAGCTTCAGCTAAGTGTTAACCAGCTCTCCGGTACAATCCCTGAAGAACTCGCGAAT 1249
||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1018 CAAGAACTTCAGCTCAGCGTTAACCAACTCTCCGGTACAATCCCTGAAGAGCTCGCGAAC 1077
Query 1250 TGCACGAAGTTGACGCATTTAGAGATCGATAACAACCAAATCTCCGGCGAGATTCCGCCG 1309
||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 TGCACGAAGCTAACACATTTAGAGATCGATAACAACCAAATCTCCGGCGAGATTCCACCG 1137
Query 1310 TTGATCGGGAAATTAACAAGCTTGACGATGTTCTTTGCGTGGCAGAATCAGTTAACCGGA 1369
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 TTGATCGGAAAATTAACAAGCTTGACGATGTTCTTCGCGTGGCAGAATCAGTTAACCGGA 1197
Query 1370 ATAATTCCAGAGTCTCTTTCTCAATGTCAAGAGCTTCAAGCGATTGATCTCTCCTACAAC 1429
| ||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1198 AAAATTCCAGAATCTCTTTCTCAATGCCAAGAGCTTCAAGCGATCGATCTCTCTTACAAT 1257
Query 1430 AATCTCTCTGGTTCGATACCTAATGGAATCTTTGAGATTCGAAACCTCACGAAGCTTCTT 1489
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1258 AATCTCTCTGGTTCGATACCTAATGGAATCTTCGAAATACGAAACCTCACGAAGCTTCTT 1317
Query 1490 CTTCTCTCTAACTACTTATCTGGATTCATACCACCGGATATTGGAAACTGCACGAATCTT 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTTCTCTCTAACTACTTATCTGGATTCATACCACCGGATATTGGAAACTGCACGAATCTC 1377
Query 1550 TACCGGTTAAGACTCAACGGTAACAGACTCGCGGGGAATATTCCGGCGGAGATTGGGAAT 1609
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1378 TACAGGTTAAGACTCAACGGAAACAGACTTGCGGGGAATATTCCGGCGGAGATTGGGAAT 1437
Query 1610 CTGAAAAATC-TCAACTTCATCGATATAAGTGAGAATCGTCTCATCGGAAACATTCCTCC 1668
|||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 CTGAAAAA-CATCAACTTTATCGATATAAGTGATAATCGTCTCATCGGAAACATTCCTCC 1496
Query 1669 GGAGATCTCCGGTTGTACAAGTCTCGAATTCGTCGATCTACATTCAAACGGTTTAACCGG 1728
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGCGATCTCCGGTTGTACAAGTCTCGAATTCGTCGATCTACATTCAAACGGTTTAACCGG 1556
Query 1729 TGGTTTACCCGGTACACTTCCGAAGAGCTTACAATTCATTGATTTATCCGATAATTCATT 1788
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1557 TGGTTTACCCGGTACACTTCCGAGGAGCTTACAATTCATCGATTTATCCGATAATTCATT 1616
Query 1789 AACCGGTTCTCTACCAACCGGAATCGGATCGTTAACCGAACTCACGAAGCTCAATCTCGC 1848
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1617 AACCGGTCCTCTACCAACCGGAATCGGATCGTTAACCGAACTAACGAAGCTCAATCTCGC 1676
Query 1849 GAAGAATCGTTTCTCCGGCGAAATCCCTCGAGAGATATCTTCCTGTCGGAGTCTTCAGCT 1908
||||| || ||||||||||||||||| ||||||| || || |||||||||||||||||
Sbjct 1677 TAAGAACCGATTCTCCGGCGAAATCCCAAGAGAGATCTCGTCTTGTCGGAGTCTTCAGCT 1736
Query 1909 TCTCAACCTCGGCGACAATGGCTTCACCGGAGAAATCCCTAACGAGTTAGGACGGATCCC 1968
||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1737 TCTCAACCTTGGCGACAATAGCTTCACCGGAGAAATCCCAAACGACCTAGGACGAATCCC 1796
Query 1969 GTCTCTTGCGATCTCTCTAAATCTCAGCTGCAATCACTTCACCGGAGAGATCCCGTCGAG 2028
||||||||| || |||| ||||||||||||||| ||||| ||||||| |||||| ||||
Sbjct 1797 GTCTCTTGCCATAGCTCTGAATCTCAGCTGCAATAACTTCGCCGGAGAAATCCCGACGAG 1856
Query 2029 ATTCTCTAGCCTCACTAATCTCGGAACCCTCGATGTCTCTCACAACAAACTCGCCGGAAA 2088
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1857 ATTCTCGAGCCTCACTAATCTCGGAACCCTCGATATCTCTCACAACAAACTCGCCGGAAA 1916
Query 2089 CCTAAACGTCTTAGCTGATCTACAGAACCTCGTCTCACTCAACATCTCCTTCAACGAATT 2148
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1917 CTTAAACGTCTTAGCTGATCTACAGAACCTCGTCTCACTCAACATCTCATTCAACGAATT 1976
Query 2149 CTCAGGCGAGTTACCAAATACTCTGTTTTTCAGGAAACTTCCACTCTCTGTTCTTGAATC 2208
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1977 CTCCGGCGAGTTACCAAACACTCTGTTTTTCAGGAAACTGCCACTCTCTGTTCTTGAATC 2036
Query 2209 AAACAAAGGGCTATTTATTTCGACCCGACCCGAGAATGGGATCCAAACCCGACACCGTTC 2268
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2037 AAACAAAGGGCTTTTTATCTCGACCCGACCCGAGAATGGGATCCAAACCCGACACCGCTC 2096
Query 2269 GGCTGTCAAAGTAACCATGTCGATCCTCGTAGCAGCAAGCGTCGTTCTTGTTCTCATGGC 2328
|| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2097 CGCCGTGAAACTAACCATGTCGATCCTCGTCGCAGCAAGCGTCGTTCTTGTTCTCATGGC 2156
Query 2329 GGTTTACACTCTCGTCAAAGCTCAACGAA--TCACCGGAAAACAAGAGGAGTTAGATTCT 2386
| ||||||||||||||||||| || ||| || |||||||||| ||||| ||||||||
Sbjct 2157 GATTTACACTCTCGTCAAAGCACA--GAAAGTCGCCGGAAAACATGAGGAACTAGATTCT 2214
Query 2387 TGGGAAGTGACTCTTTATCAGAAACTCGATTTCTCCATCGACGACATCGTCAAGAA-CTT 2445
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 2215 TGGGAAGTGACTCTTTATCAAAAACTCGATTTCTCAATCGACGACATCGTCAAGAATCT- 2273
Query 2446 AACTTCAGCTAACGTGATCGGAACTGGAAGCTCCGGTGTAGTTTACAGAGTCACAATCCC 2505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 AACTTCAGCTAACGTGATCGGAACTGGAAGCTCCGGTGTAGTTTACAGAGTCACAATCCC 2333
Query 2506 GTCCGGTGAAACTTTAGCTGTGAAGAAAATGTGGTCAAAGGAAGAAAACAGAGCGTTTAA 2565
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2334 GTCCGGTGAAACTTTAGCCGTGAAGAAAATGTGGTCAAAGGAAGAAAACGGAGCGTTTAA 2393
Query 2566 CTCAGAGATCAACACTCTTGGATCGATTCGACATAGGAACATAATCCGTCTTTTGGGTTG 2625
|||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 2394 CTCAGAGATCAACACTCTTGGATCTATTCGACATCGGAACATAATCCGTCTCTTGGGTTG 2453
Query 2626 GTGTTCGAATCGGAATCTGAAGCTTTTGTTCTATGATTATCTTCCTAACGGAAGTTTAAG 2685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 GTGTTCGAATCGGAATCTGAAGCTTTTGTTCTATGATTATCTTCCTAACGGAAGTTTAAG 2513
Query 2686 CTCTCTGCTTCACGGTGCCGGTAAAGGAAGTGGAGGAGCTGATTGGGAAGCACGTTACGA 2745
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2514 CTCTCTGCTTCATGGTGCCGGTAAAGGAAGTGGAGGAGCTGATTGGCAAGCACGTTACGA 2573
Query 2746 CGTCGTTTTAGGCGTTGCACATGCACTAGCTTATCTTCATCATGATTGTCTT-CCTCCGA 2804
|||||||||||||||||||||||| || ||||||||||||||||||||| || |||||||
Sbjct 2574 CGTCGTTTTAGGCGTTGCACATGCTCTTGCTTATCTTCATCATGATTGT-TTACCTCCGA 2632
Query 2805 TTCTACACGGTGACGTTAAAGCTATGAATGTCTTATTGGGTTCCCGCTTCGAATCTTACT 2864
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2633 TTCTACACGGTGACGTTAAAGCTATGAATGTCTTATTGGGTTCCCGGTTCGAATCTTACT 2692
Query 2865 TAGCCGATTTCGGTTTAGCAAAAATCGTCTCCGGTGAGGGAGTTACCGATGGAGATTCGT 2924
||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 2693 TAGCCGATTTCGGTTTAGCGAAAATCGTATCCGGTGAGGGAGTTATCGATGGAGATTCGT 2752
Query 2925 CTAAATTGAGTAACCGGCCTCCGTTAGCCGGTTCTTATGGTTACATGGCTCCAGAACATG 2984
| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 2753 CGAAATTGAGTAACCGGCCTCCGTTAGCCGGTTCTTACGGCTATATGGCTCCAGAACATG 2812
Query 2985 CTTCGATGCAACATATAACAGAAAAGAGTGATGTGTATAGCTATGGAGTGGTGCTACTAG 3044
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 CTTCAATGCAACATATAACCGAAAAGAGTGATGTGTATAGCTATGGAGTGGTGCTACTAG 2872
Query 3045 AAGTTTTAACCGGGAAGCATCCATTGGACCCGGATCTACCCGGAGGTGCTCATTTGGTTC 3104
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2873 AAGTTTTAACCGGGAAGCATCCATTGGATCCGGATCTACCCGGTGGTGCTCATTTGGTTC 2932
Query 3105 AATGGGTGAGAGATCATTTAGCCGGAAAGAAAGATCCTAGAGAAATTCTTGACCCGAGAC 3164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2933 AATGGGTGAGAGATCATTTAGCCGGAAAGAAAGATCCTAGAGAAATTCTTGACCCGAGAC 2992
Query 3165 TCCGCGGGCGGGCAGATCCTATAATGCATGAGATGCTACAAACTCTAGCGGTCTCGTTCC 3224
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2993 TCCGCGGACGGGCAGATCCCATAATGCATGAGATGCTACAAACTCTAGCAGTCGCGTTCC 3052
Query 3225 TTTGTGTGAGCAACAAGGCATCCGATCGGCCTATGATGAAAGACATTGTGGCAATGCTTA 3284
|||| ||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||
Sbjct 3053 TTTGCGTGAGCAACAAGGCAGCTGATAGGCCTATGATGAAAGACATTGTGGCGATGCTTA 3112
Query 3285 AAGAGATTAGGCAGTTTGATATGGATAGATCGGAATCCGATATGATAAAAGGCGGAAAAT 3344
|||||||||| ||||||||||| || |||||||| |||||||||| ||||| |||||||
Sbjct 3113 AAGAGATTAGACAGTTTGATATCGAGCGATCGGAAACCGATATGATTAAAGGGGGAAAAT 3172
Query 3345 GCGAAAAATGGCAGCCGCAACCGTTACCACCGGAGAAAATTGTCAGTACTCCTCGAGGTT 3404
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3173 GCGAAAAATGGCAGCCGCAACCGTTACCACCGGAGAAAATTGTCAATACTCCTCGAGGTT 3232
Query 3405 CATCTAATTGTTCGTTTGCTTACTCGGATGAATCCGTATAA 3445
||||||||||||||||||||| |||||||||||||||||||
Sbjct 3233 CATCTAATTGTTCGTTTGCTTTCTCGGATGAATCCGTATAA 3273
> Ahg945418 jgi|Araly1|945418|scaffold_701647.1
Length=3324
Score = 2030 bits (1099), Expect = 0.0
Identities = 2634/3352 (79%), Gaps = 198/3352 (6%)
Strand=Plus/Plus
Query 203 ctcttccttctt-tt-tcactcctctcttttcttctccatcccctgttt-ttc-c-ATAG 257
||| |||||||| || || || |||| |||||||| ||| |||||||| ||| | | |
Sbjct 50 CTC-TCCTTCTTCTTATCCCTACTCT-GTTTCTTCTTCATTCCCTGTTTCTTCTCTCTCG 107
Query 258 ACGAACAGGGTCTAGCTCTCCTCTCATGGAAATCTCAGTTGAACATCTCCGGAGACGCTT 317
||||||| |||| ||||||| | |||||||| || || ||||||||||||| |||||||
Sbjct 108 ACGAACAAGGTCAAGCTCTCTTGTCATGGAAGTCCCAACTGAACATCTCCGGCGACGCTT 167
Query 318 TATCTTCTTGGAAAGCCTCCGA-ATCGA-ATCCTTGTCAA-TGGGTGGGAATCAAATGCA 374
| || || ||| | | |||| | | | ||| || ||| ||||| || | ||||| |
Sbjct 168 TTTCCTCCTGGCACTTCGCCGACA-C-ATCTCCCTG-CAACTGGGTCGGCGTAAAATGTA 224
Query 375 A-CGAAAGAGGTCAAGTCTCGGAGATACAACTCCAAGTCATGGATTTTCAAGGTCCGT-T 432
| || |||||| |||| ||||||||||||||| ||| |||||| || |||||| | | |
Sbjct 225 ACCG-TAGAGGTGAAGTTTCGGAGATACAACTCAAAGGCATGGACTTGCAAGGTTC-TCT 282
Query 433 ACCGGCGACGAATCTCCGACAG-ATAAAGTCTCTGACTTTGCTCAGC-TTAACCTC-CGT 489
|||| ||||| |||||| || | |||||||| |||| |||| | ||| | || | |
Sbjct 283 GCCGGTGACGAGTCTCCG-GAGCCTCAAGTCTCTTACTTCCCTCA-CTTTATCTTCAC-T 339
Query 490 GAATCTCACTGG-TTCAATCCCTAAGGAGCTTGGAGACTTGTC-GGAGCTAGAAGTT-CT 546
||||| || || | |||||| |||||| | |||||||| || ||||| ||| || ||
Sbjct 340 CAATCTTACCGGAGT-AATCCCCAAGGAGATAGGAGACTT-TCTTGAGCTTGAA-TTACT 396
Query 547 TGATTTAGCTGATAATTCTCTCTCTGGTGAAATCCCTGTGGATATCTTCAAGCTCAAGAA 606
|||||| | |||||||||||||| || || ||||||||||| ||||||| |||||||||
Sbjct 397 CGATTTATCGGATAATTCTCTCTCCGGCGATATCCCTGTGGAAATCTTCAGGCTCAAGAA 456
Query 607 ACT-AAAGATTCTGTCTCTCAACACAAATAATCTCGAAGGT-GTGATTCC-ATCGGAG-T 662
||| ||| | ||||||| | ||||| || |||||||||||| | |||||| || |||| |
Sbjct 457 ACTCAAA-ACTCTGTCTTTGAACACTAACAATCTCGAAGGTCG-GATTCCGAT-GGAGAT 513
Query 663 TAGGGAATC--T-CGTTAACCTCATCGAGCTCACT-CTCTTCGACAATAAACTCGCCGGA 718
| ||||||| | || | ||| | ||||| | | || ||||| || || || |||||
Sbjct 514 T-GGGAATCTTTCCGGT---CTCCTAGAGCTTA-TGCTTTTCGATAACAAGCTATCCGGA 568
Query 719 GAGATTCCTAGAACCATCGGAGAACTCAAGAATCTAGAAATCTTCCGTGCAGGTGGTAAC 778
||||| || || | |||||||| |||||||||||| || |||| ||||| ||||| |||
Sbjct 569 GAGATCCCGAGGAGTATCGGAGAGCTCAAGAATCTACAAGTCTTACGTGCTGGTGGGAAC 628
Query 779 AAGAATCTCAGAGGAGAGCTTCCTTGGGAGATTGGTAACTGCGAGAGTCTTGTGACT--T 836
|||||||| ||||| ||||||||||||||||| || || ||||||| || || | | |
Sbjct 629 AAGAATCTAAGAGGTGAGCTTCCTTGGGAGATAGGAAATTGCGAGAACCTAGT-AATGCT 687
Query 837 TAGGTCTCGCCGAAACAAGTCTCTCCGGTAGACTTCCGGCGTCGATCGGAAACCTGAAAA 896
| |||||||| || || ||||||||||||||||||||||||||| | |||||| || |||
Sbjct 688 T-GGTCTCGCTGAGACTAGTCTCTCCGGTAGACTTCCGGCGTCGGTAGGAAACTTG-AAA 745
Query 897 AG-GTTCAGACAATAGCTCTTTACACGTCACTCTTGTCTGGTCCAATCCCTGATGAGATT 955
| |||||||||||||| |||| ||||||||||||||||||||||| || |||||||||
Sbjct 746 CGTGTTCAGACAATAGCAATTTATACGTCACTCTTGTCTGGTCCAATTCCGGATGAGATT 805
Query 956 GGAAACTGCACAGAGCTTCAAAACCTCTACTTGTACCAAAACTCAATCTCTGGATCGATT 1015
||| |||| || ||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 806 GGATACTGTACGGAGCTCCAAAACCTCTACTTGTACCAGAACTCGATCTCCGGATCGATT 865
Query 1016 CCTGTATCA--ATGGGACGTCTCAAGAAGCTTCAAAGTCTTCTCTTATGGCAAAACAATC 1073
|| || || || ||| || | |||||||| || || || ||||||||||| |||||||
Sbjct 866 CC--TAACACCATTGGAGGTTTAAAGAAGCTGCAGAGCCTACTCTTATGGCAGAACAATC 923
Query 1074 TCG-TCGGAAAGATCCCTACCGAGCTAGGCACCTGTCCGGAGCTTTTCCTCGTCGATTTA 1132
||| | ||||| || ||| | ||||| || | ||||| || || | || |||||||
Sbjct 924 TCGTTGGGAAA-ATGCCTTCAGAGCTTGGGAATTGTCCCGAACTCTGGCTTATCGATTTT 982
Query 1133 TCGGAAAATCTCCTCACCGGAAACATCCCAAGAAGCTTC-GGAAACCTTCCA-AATCTCC 1190
|| || ||||| |||||||| |||||||| || |||||| ||||| ||| | ||||| |
Sbjct 983 TCCGAGAATCTTCTCACCGGGAACATCCCGAGGAGCTTCGGGAAA-CTT-GAGAATCTAC 1040
Query 1191 AAGAGCTTCAGCTAAGTGTTAACCAGCTCTCCGGTACAATCCCTGAAGAACTCGCGAATT 1250
|||||||||| || || || ||||| |||| || |||||||||||||| || |||||||
Sbjct 1041 AAGAGCTTCAACTGAGCGTAAACCAAATCTCAGGAACAATCCCTGAAGAGCTAGCGAATT 1100
Query 1251 GCACGAAG-TTGACGCATTTAGAGATCGATAACAACCAAATCT-CCGGCGAGATTCCGCC 1308
|||||||| || ||||||||||||||||| || |||| || | |||| ||||||||| |
Sbjct 1101 GCACGAAGCTT-ACGCATTTAGAGATCGACAATAACCTTAT-TACCGGAGAGATTCCGTC 1158
Query 1309 GTTGATCG-GGAAATTAACAAGCTTGACGATGTTCTTT-GCGTGGCAGAATC-AGTTAAC 1365
||||| | | || ||| |||||| |||||||| ||| ||||||||||| | |||||||
Sbjct 1159 ATTGAT-GAGTAACCTAAGAAGCTTAACGATGTT-TTTCGCGTGGCAGAA-CAAGTTAAC 1215
Query 1366 CGGAATAAT-TC-CAGAGTCTCTTTCTCAATGTCAAGAGCTTCAAGCGATTGATCTCTCC 1423
||||| || | ||||||||| || || |||| ||||||||||| || ||||||||
Sbjct 1216 CGGAAGCATCCCACAGAGTCTC--TCCCAGTGTCGTGAGCTTCAAGCCATCGATCTCTCT 1273
Query 1424 TACAACAATCTCTCTGGTTCGATACCTAATGGA-ATCTTTGAGATT-CGAAACCTCACGA 1481
||||||| |||||||||||| || || || || || |||| | || |||||||||||||
Sbjct 1274 TACAACAGTCTCTCTGGTTCTAT-CCCAAAAGAGATTTTTG-GGTTACGAAACCTCACGA 1331
Query 1482 AGCTTCTTCTTCTCTCTAACT-ACTTATCTGGATTCATACCACCGGATATTGGAAACTGC 1540
|||||||||||||||| || | | || || || |||||||| |||||||||||||||||
Sbjct 1332 AGCTTCTTCTTCTCTCCAA-TGATTTGTCAGGTTTCATACCGCCGGATATTGGAAACTGT 1390
Query 1541 ACGAATCTTTACCGGTTAAGACTCAACGGTAACAG-ACTCGCGGGGAA-TATTCCGGCGG 1598
||||||||||||||||| ||||||||||| ||||| | |||| || || ||| ||| |||
Sbjct 1391 ACGAATCTTTACCGGTTGAGACTCAACGGAAACAGGA-TCGCCGG-AAGTATCCCGTCGG 1448
Query 1599 AGATTGGGAATCTGAAAAATCTCAACTTCATCGATATAAGTGAGAATCGTCTCATCGGAA 1658
| || ||||| ||||||||||||||||| | |||||||| ||||| |||||| |||| |
Sbjct 1449 ATATGGGGAACCTGAAAAATCTCAACTTTGTTGATATAAGCGAGAACCGTCTCGTCGGGA 1508
Query 1659 ACATTCC-TCCGGAGATCTCCGGTTGTACAAGTCTCGAATT-CGTCGATCTACATTCAAA 1716
|| ||| ||||| ||||| ||||||| ||| ||||| || | ||||||| || || ||
Sbjct 1509 -CAATCCCTCCGGCGATCTATGGTTGTAAAAGCCTCGAGTTTC-TCGATCTTCACTCGAA 1566
Query 1717 CGGTTTAACCGGTGGTTTACCCGGTACACTTCCGAAGAGCTTACAA-TTCATTGATTTAT 1775
| || | ||||| || | ||| ||||| || || ||||| || ||||| ||||| |
Sbjct 1567 CAGTCTCTCCGGTTCATTGCTCGGCACACTCCCAAAAAGCTTG-AAGTTCATCGATTTTT 1625
Query 1776 CCGATAATTCAT-TAACCGGTTCTCTACCAACCGG-AATCGGATCGTTAACCGAACTCAC 1833
| ||||| || | | | ||| |||| || |||| ||| |||| ||| || ||||| ||
Sbjct 1626 CTGATAACTC-TCTGTCTGGTCCTCTGCCT-CCGGGAATAGGATTGTTGACAGAACTAAC 1683
Query 1834 GAAGCTCAATCTCGCGAAGAATCGTTTCTCCGGCGAAATCCCTCGAGAGATATCTTC-CT 1892
||||||||||||||| ||||| || |||||||||||||||||| || | | |||| | ||
Sbjct 1684 GAAGCTCAATCTCGCCAAGAACCGATTCTCCGGCGAAATCCCTAGACA-A-ATCTCCACT 1741
Query 1893 -GTCGGAGTCTTCAGCTTCTCAACCTCGGCGACAATGGC-TTCACCGGAGAAATCCCTA- 1949
|||||||||| |||||||| || |||||||| |||| | ||| |||| |||||||| |
Sbjct 1742 TGTCGGAGTCTACAGCTTCTTAATCTCGGCGAAAATG-CATTCTCCGGTGAAATCCC-AG 1799
Query 1950 ACGAGTTAGGACGGATCCCGTCTCTTGCGATCTCTCTAAATCTCAGCTGCAATCACTTCA 2009
|||| || || | ||||||||||| || |||||||| ||||| ||||||||| |||
Sbjct 1800 ACGAATTGGGTCAAATCCCGTCTCTGGCAATCTCTCTTAATCTTAGCTGCAATGGGTTCG 1859
Query 2010 CCGGAGAGATCCCGTCGAGATTCTCTAGCCTC-ACTAATCTCGGAACCCTCGATGTCTCT 2068
|||||| || |||||||||||||| | || | || || ||| || || |||||
Sbjct 1860 TCGGAGAAATACCGTCGAGATTCTCC-GACTTGAAAAACCTTGGAGTGCTAGACATCTCT 1918
Query 2069 CACAACAAACTCGCCGGAAACCTAAACGTCTTAGCTGATCTACAGAACCTCGTCTCACTC 2128
|||||| ||||| |||||||| | | || ||| | ||| | || || |||||||| |||
Sbjct 1919 CACAACCAACTCACCGGAAACTTGATGGTTTTAACGGATTTGCAAAATCTCGTCTCTCTC 1978
Query 2129 AACATCTCCTTCAACGAATTCTCAGGCGAGTTACCAAATACTCTGTTTTTCAGGAAACTT 2188
||| |||||||||| || ||||| ||||| ||||||||||||| |||||| ||| ||||
Sbjct 1979 AACGTCTCCTTCAATGATTTCTCCGGCGATTTACCAAATACTCCCTTTTTCCGGAGACTT 2038
Query 2189 CCACTCTCTGTTCTTGAATCAAACAAAGGGCTATTT-ATTTCGAC--C-----CGACCCG 2240
|||||||||| ||| | |||||||||||||| || ||||| | | |||||||
Sbjct 2039 CCACTCTCTGATCTCGCCTCAAACAAAGGGCT-TTACATTTCTAATGCAATTTCGACCCG 2097
Query 2241 AGAATGGGATCCAA--ACCCG-ACACCGTTCGG-CTGTCAAAGTAACCATGTCGATCCTC 2296
| || | || | ||||| | || |||| | | || ||| | ||||| | || |||
Sbjct 2098 ATC-TG--ACCCGACGACCCGGA-ACAGTTCCGTC-GTTAAATTGACCATTTTAATTCTC 2152
Query 2297 GTAG-CAG-CAA-GCGTCGTTCTTGTTCTCATGGCGGTTTACACTCTCGTCAAAGCTCAA 2353
|| | | | || || ||| || || ||| |||||||||||||||| ||| || |
Sbjct 2153 GTCGTC-GTCACTGC--CGTACTCGTGCTCCTGGCGGTTTACACTCTAGTCCGGGC--A- 2206
Query 2354 CGAATCACCGGAAAACAA------G-AGGAG-T-TAGATTCTTGGGAAGTGACTCTTTAT 2404
||| | |||||||||| | || || | ||||||| ||||||||||| |||||
Sbjct 2207 CGAGCCGCCGGAAAACAGCTCCTCGGAGAAGATATAGATTCGTGGGAAGTGACGCTTTAC 2266
Query 2405 CAGAAACTCGATTTCTCCATCGACGACATCGTCAAGAA-CTTAACTTCAGCTAACGTGAT 2463
|| ||||||||||| || |||||||||||||| ||||| || | | ||||| ||||||||
Sbjct 2267 CAAAAACTCGATTTTTCAATCGACGACATCGTTAAGAATCTGA-CGTCAGCAAACGTGAT 2325
Query 2464 CGGAACTGGAAGCTCCGGTGTAGTTTACAG-AGTCACAAT-CCCGTCCGGTGAAACTTTA 2521
|||||| |||||||||||||| || ||| | | | || || ||| ||||| || || |
Sbjct 2326 CGGAACCGGAAGCTCCGGTGTGGTATACCGTA-TAACGATTCCC-TCCGGCGAGTCTCTG 2383
Query 2522 GCTGTGAAGAAAATGTGGTCAAAGGAAGAAAACAGAGCGTTTAACTCAGAGATCAACACT 2581
|| ||||||||||||||||| |||||||| | | |||||||| || |||||||| |||
Sbjct 2384 GCGGTGAAGAAAATGTGGTCGAAGGAAGAGAGTGGTGCGTTTAATTCCGAGATCAAAACT 2443
Query 2582 CTTGGATCGATTCGACATAGGAACATAATCCGTCTT-TTGGGTTGGTGTTCGAATCGGAA 2640
|| ||||||||||| || |||||||| | |||||| |||| |||||| || ||||||||
Sbjct 2444 CTAGGATCGATTCGTCACAGGAACATTGTTCGTCTTCTTGG-TTGGTGCTCTAATCGGAA 2502
Query 2641 TCTGAAGCTTTTGTTCTATGATTATCTTCCTAACGGAAGTTTAAGCTCTCTGCTTCACGG 2700
|||||| || ||||||| || ||||| |||||||| || | || |||| |||||||||
Sbjct 2503 TCTGAAACTCCTGTTCTACGACTATCTCCCTAACGGTAGCCTGAGTTCTCGGCTTCACGG 2562
Query 2701 TGCCGGTAAAGGAAGTGGAGGAGCTGATTGGGAAGCACGTTACGACGTCGTT-TTAGGCG 2759
||||| |||||| | | ||| | ||||||||| || || |||||||||||| || || |
Sbjct 2563 CGCCGGAAAAGGA-G-G-AGGTGTTGATTGGGAGGCTCGATACGACGTCGTTCTT-GGTG 2618
Query 2760 TTGCACATGCACTAGCTTATCTTCATCATGATTGTCTTCCTC-CGATTCTACACGGTGAC 2818
| || |||||||| |||||||| || ||||||||||| || | | ||| |||||||||||
Sbjct 2619 TGGCCCATGCACTTGCTTATCTCCACCATGATTGTCTCCC-CACAATTATACACGGTGAC 2677
Query 2819 GTTAAAGCTATGAATGTCTTATTGGGTTCC-CGCTTCGAATCTTACTTAGCCGATTTCGG 2877
||||||||||||||||||||||||||| || | ||| ||| | |||||||| ||||||||
Sbjct 2678 GTTAAAGCTATGAATGTCTTATTGGGT-CCTCACTTAGAACCCTACTTAGCTGATTTCGG 2736
Query 2878 TTTAGCAAAAATCGTCTCCGGTGAGGGAGTTACCG-A-TGGAGATTCGTCTAAATTGAGT 2935
|||||| | || ||| |||||| | | ||| | | | || || ||| ||| |
Sbjct 2737 TTTAGCTAGAACCGTTTCCGGTTATCCAAATACTGGAATTGAT-TT-GTCAAAACCCACC 2794
Query 2936 AACCGGCCTCCGTTAGCCGGTTCTTATGGTTACATGGCTCCAGAACATGCTTCGATGCAA 2995
|| |||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2795 AATCGGCCTCCCTTGGCTGGTTCATATGGTTACATGGCTCCGGAACATGCTTCGATGCAA 2854
Query 2996 CATATAACAGAAAAGAGTGATGTGTATAGCTATGGAGTGGTGCTACTAGAAGTTTTAACC 3055
| |||||| || ||||| ||||| ||||| || |||||||| | |||| ||| |||||
Sbjct 2855 CGTATAACCGAGAAGAGCGATGTTTATAGTTACGGAGTGGTATTGTTAGAGGTTCTAACC 2914
Query 3056 GGGAAGCATCCATTGGACCCGGATCTACCCGGAGGTGCTCATTTGGTTCAA-TGGGTGAG 3114
|| |||||||| || || ||||||||||| |||||| | ||||||||| || ||||||||
Sbjct 2915 GGAAAGCATCCGTTAGATCCGGATCTACCAGGAGGTTCACATTTGGTT-AAGTGGGTGAG 2973
Query 3115 AGATCATTTAGCCG-GAAAGAAAGATCCTAG-A-GAAATTCTTGACCCGAGACTCCGCGG 3171
|||||| || || | |||| |||||||| || | | |||||||| |||||||| ||
Sbjct 2974 AGATCACTTGGCTGAGAAA-AAAGATCCGAGCATGC--TTCTTGACTCGAGACTCAATGG 3030
Query 3172 GCGGGCAGA-TCCTATAATGCATGAGATGCTACAAACTCTAGCGGTCT-CGTTCCTTTGT 3229
|||| | || || |||||||| |||||||| |||||||| ||||| | ||||||| |||
Sbjct 3031 GCGGACTGACTCG-ATAATGCACGAGATGCTTCAAACTCTTGCGGT-TGCGTTCCTCTGT 3088
Query 3230 GTGAGCAACAAGGCATCCGATCGGCCTATGATGAAAGACATTGTGGCAATGCTTAAAGAG 3289
||||||||||||||| ||| |||||| |||||||||| ||||||||||||| | |||
Sbjct 3089 GTGAGCAACAAGGCAAACGAACGGCCTTTGATGAAAGATGTTGTGGCAATGCTCACGGAG 3148
Query 3290 ATTAGGCAGTTTGATAT-GGATAGATCGGA-ATCCGATATGAT-AAAA--GGCGGAAAAT 3344
|| ||||| ||||| | ||| ||||||| | |||||| ||| |||| || || |
Sbjct 3149 ATAAGGCACATTGATGTTGGAC-GATCGGAGA-CCGATAAGATCAAAACTGGTGGT---T 3203
Query 3345 GCG-AA--AAATGGCAGCCGCAACCGTTACCACCG---GAGAAAATTGTCAGTACTCCTC 3398
||| || ||| | |||| |||| ||| || |||||||| ||| | ||| |
Sbjct 3204 GCGGAAGCAAA-G--AGCCACAACAATTAATGTCGAATGAGAAAATCATCAATTCTCA-C 3259
Query 3399 GAGGTTCATCTAATTGTTCGTTTGC-TTACTCGGATGAATCCGTATAAAAAA 3449
| | ||| ||||||||||| ||||| || |||||||| |||||||||||||
Sbjct 3260 G-G-TTCGTCTAATTGTTCATTTGCGTTT-TCGGATGACTCCGTATAAAAAA 3308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138377335428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5