BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56050.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495692 jgi|Araly1|495692|fgenesh2_kg.8__1508__AT5G56050.1 1604 0.0
Ahg950261 jgi|Araly1|950261|scaffold_802148.1 248 6e-65
> Ahg495692 jgi|Araly1|495692|fgenesh2_kg.8__1508__AT5G56050.1
Length=1144
Score = 1604 bits (868), Expect = 0.0
Identities = 1068/1159 (92%), Gaps = 35/1159 (3%)
Strand=Plus/Plus
Query 17 TTCTCACACCACCAAGATACTCAAAAGACAGAAACTTCAAGAGTTT-C--C-T--TCTTC 70
||||||||||||||||| |||||||| ||||||||||||||||||| | | | |||||
Sbjct 1 TTCTCACACCACCAAGAAACTCAAAAAACAGAAACTTCAAGAGTTTCCTACTTCCTCTTC 60
Query 71 --C-TCTTCAATTATCAAGACATAAGAACCCATGTCAAAAT-TTTCTCCACCGCCACAAT 126
| ||||||| |||||||||||||||||||||||| |||| || ||||||||||||| |
Sbjct 61 TACTTCTTCAACTATCAAGACATAAGAACCCATGTC-AAATCTTCCTCCACCGCCACAGT 119
Query 127 CTCAA-C-CA----CAGCCGCCCGAAACACCACCATGGGAAACGCCGTCTTCTAAATGGT 180
| ||| | || || ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 120 CGCAACCGCAGCCGCAACCGCCCGAAACTCCTCCATGGGAAACGCCATCTTCTAAATGGT 179
Query 181 ATTCTCCAATATACACGCCATGGAGAACAACTCCAAGAAGCACACAATCAACTCCAACG- 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 ATTCTCCAATATACACACCATGGAGAACAACTCCAAGAAGCACACAATCAACTCCAA-GT 238
Query 240 ACTACACCAATAGCTCTTACCGAAGTGATTGTGTCTAAATCACCTTTGTCTAATCAGAAG 299
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 239 ACAACACCAATAGCTCTTACCGAAGTGATTGTGTCTAAATCACCTTTGTCTCATCTCAAG 298
Query 300 AGCCCTGCAACTCCTAAACTAGACAGTATGGAAGCGCA-TCCTTTACACGAGACGATGGT 358
|||||| ||||||||||||||||| || | |||| || | ||||| ||||||| |||||
Sbjct 299 AGCCCTACAACTCCTAAACTAGACGGTGTCCAAGCACAGT-CTTTAAACGAGACAATGGT 357
Query 359 TCTCTTACAGCTAAGAACAAGCCGGACCAATCCATGGATTTGGTGTGGTGCAGCTTTGTG 418
|||| | | |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCCTGCGGCTACGAACAAGCAGGACCAATCCATGGATTTGGTGTGGTGCAGCTTTGTG 417
Query 419 TTTTATCTTCAGCATACTTCTTATAGTCTTTGGGATTGCTACTTTGATTCTCTATCTCGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 TTTTATCTTCAGCATACTTCTTATAGTCTTTGGGATTGCTACTTTGATTCTCTATTTCGC 477
Query 479 CGTCAAACCAAGAACCCCTGTTTTTGACATCTCTAATGCAAAGCTCAACACCATCCTCTT 538
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 478 CGTCAGGCCAAGAACCCCTGTTTTCGACATCTCTAATGCAAAGCTCAACACTATCCTCTT 537
Query 539 TGAGTCACCGGTTTATTTCAACGGTGATATGTTGTTGCAGTTAAATTTCACCAATCCTAA 598
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 538 CGAGTCACCGGTTTATTTCAACGGTGATATGTTGTTGCAGTTGAATTTCACCAATCCAAA 597
Query 599 CAAGAAACTAAATGTGAGGTTTGAGAATCTTATGGTAGAGCTCTGGTTTGCCGACACAAA 658
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 598 CAAGAAACTAAATGTGAGGTTTGAGAATCTTATGGTCGAGCTCTGGTTTTCCGACACAAA 657
Query 659 GATCGCCACACAAGGTGTCTTGCCGTTTTCGCAAAGAAACGGCAAGACTAGGCTAGAACC 718
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 658 GATCGCCACACAAGGTGTCTTGCCGTTTTCACAAAGAAATGGTAAGACTAGGCTAGAACC 717
Query 719 GATCCGTTTGATTTCAAATTTGGTCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GATCCGTTTGATTTCAAATTTGGTCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAG 777
Query 779 ACAAGTGACGAGCAATAGGATAGCTTATGAAATCAGAAGTAACTTCAGAGTCAAAGCTAT 838
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 ACAAGTGACGAGCAATAGGATAGCTTATGAAATCAGAAGTAACTTCAAAGTCAAAGCTAT 837
Query 839 TTTTGGGATGATTCATTATTCTTATATGCTACACGGGATTTGTCAGCTTCAATTGAGCAG 898
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 838 TTTTGGGATTATTCATTATTCTTATATGCTTCACGGGAGTTGTCAGCTTCAATTGAGCAG 897
Query 899 TCCACCAGCCGGTGGCTTAGTTTATCGGAACTGCACTACAAAAAGATGGTGAAGAACAGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCCACCAGCCGGTGGCTTAGTTTATCGGAACTGCACTACAAAAAGATGGTGAAGAACAGA 957
Query 959 G-TTCATCTTCAAAGTCTCTATCTTTACCCTTGTGTTCTTCAAGCATAGATCTTTC-TTT 1016
| || ||||||||||||| || |||| || | |||||||| ||||||||||||||| |||
Sbjct 958 GGTT-ATCTTCAAAGTCTGTAGCTTTGCCAT-GTGTTCTTAAAGCATAGATCTTTCCTTT 1015
Query 1017 TGCCCACTCACAAGATGTaaaaaaaCGAATCAAGATTCAACAGACTCTATGCAAGAGCCA 1076
| ||||||| ||||||||||||| ||||||||||||||| ||| | |||||| |||
Sbjct 1016 T-CCCACTCCCAAGATGTAAAAA--CGAATCAAGATTCAATAGA-T----GCAAGAACCA 1067
Query 1077 AGATAAGATTTTTGTTGTATATTGTTAAGACATATCTAGTAAGGTTGGTGTAATTAAATG 1136
|||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1068 AGATAAGATTTT-GTTGTATATTGTTAAAACAGATCTAGTAAGGTTGGTGTAATTAA-TG 1125
Query 1137 AGTCAAAGAGATAATTCTT 1155
| |||||||||||||||||
Sbjct 1126 ATTCAAAGAGATAATTCTT 1144
> Ahg950261 jgi|Araly1|950261|scaffold_802148.1
Length=482
Score = 248 bits (134), Expect = 6e-65
Identities = 187/213 (88%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 742 TCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAGACAAGTGACGAGCAATAGGATAG 801
|||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||
Sbjct 253 TCTTCTTGCCTGTAAATCATATGGTTGAGCTCAGAAGACAAGTGGCAAGCAATATGATAG 312
Query 802 CTTATGAAATCAGAAGTAACTTCAGAGTCAAAGCTATTTTTGGGATGATTCATTATTCTT 861
||||||||||| |||||| |||| ||| |||||| || ||||||| ||||| ||||| |
Sbjct 313 ATTATGAAATCATAAGTAAATTCACAGTGAAAGCTGTTCTTGGGATCATTCACTATTCGT 372
Query 862 ATAT-GCTACACGGGATTTGTCAGCTTCAATTGAGCAGTCCACCAGCCGGTGGCTTAGTT 920
|| | |||| | |||| |||||||||||| |||| |||||||||||||||| ||||| |
Sbjct 373 AT-TGGCTAAAAGGGAGTTGTCAGCTTCAGTTGACCAGTCCACCAGCCGGTAGCTTACTG 431
Query 921 TATCGGAACTGCACTACAAAAAGATGGTGAAGA 953
| |||||||||||||||||||||||||||||||
Sbjct 432 TCTCGGAACTGCACTACAAAAAGATGGTGAAGA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5