BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56075.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495693 jgi|Araly1|495693|fgenesh2_kg.8__1509__AT5G56075.1 870 0.0
> Ahg495693 jgi|Araly1|495693|fgenesh2_kg.8__1509__AT5G56075.1
Length=725
Score = 870 bits (471), Expect = 0.0
Identities = 556/595 (93%), Gaps = 14/595 (2%)
Strand=Plus/Plus
Query 190 ACTAAAAGGTTAAGACATTACACTAACAAACAAAAAATTCTTTTGGTCGGAGAAGGAGAC 249
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 132 ACTAAAAGGTTAAGACATTACACTAACAAACAAAAAATACTTTTGGTCGGAGAAGGAGAC 191
Query 250 TTCTCCTTTTCTCTGTCTCTAGCTAGAGCCTTTGGTTCTGCATCTAACCTCACCGCAACC 309
|||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||| |||
Sbjct 192 TTCTCCTTTTCTCTATCTTTAGCTAGAGCCTTTGGTTCTGCAACAAACCTCACCGCGACC 251
Query 310 TCTCTCGATACTCAAGGGGAGCTAGAGCAG-AAGTTTAAGAATGGGAAGGCGAATGTAGA 368
|||||||||||||||||||||||||||| | |||||||||||||||||| |||| |||||
Sbjct 252 TCTCTCGATACTCAAGGGGAGCTAGAGC-GTAAGTTTAAGAATGGGAAGTCGAACGTAGA 310
Query 369 AGAGCTGGAAAGACTCGGGTGCAGCGTGGTCTATGGAGTTAACGTGCACTCCATGATCAC 428
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 311 AGAGCTGGAAAGACTCGGGTGCAGCGTGGTATATGGAGTTAACGTCCACTCCATGACCAC 370
Query 429 AAAACCTAGCGTTGGTGGTTCTGCGATATATGACAGAGTCATCTTCAATTTTCCT-A--C 485
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |
Sbjct 371 AAAGCCTAGCGTTGGTGGTTCCGCGATATATGACAGAGTCATCTTCAATTTCCCTCACGC 430
Query 486 ------GCAT---GAGCTTGTACGAGGGTTTATGAAGAGTGCAAGAGTGTTGGTGAAAGA 536
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 431 AGGGAGGCATCAAGAGCTTGTAAGAGGGTTTATGAAGAGTGCAAGAGTGATGGTGAAAGA 490
Query 537 TGAAGACAAGGGAGGAGAGATTCATGTGATTCATAAGACAGAATATCCATTTAGCGAGTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGAAGACAAGGGAGGAGAGATTCATGTGATTCATAAGACAGAATATCCATTTAGCGAGTG 550
Query 597 GAAGCTCAAGACTTTGGGTGAGAAAGAAGGTTTAGATTTGATCCGTGAGGTCGAGTTTTG 656
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 GAAGCTAAAGACTTTGGGTGAGAAAGAAGGTTTAGATTTGATCCGTGAGATCGAGTTTTG 610
Query 657 CTTAAGTCATTATCCTGGTTATTTCAACAAGAGAGGAAGTGGAGGTTATAGTGACTCTAG 716
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 611 CTTAAGTCAATATCCTGGTTATTCCAACAAGAGAGGAAGTGGAGGTTATAGTGATTCTAG 670
Query 717 CTTCCCTGTTGGGAAATCTTCTACTTTCATGTTTACGAAACAGTTCTTTTATTAA 771
||||||||| || ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 671 CTTCCCTGTCGGAAAATCTTCTACTTTCATGTTTACAAAACAGTTCTTTTACTAA 725
Score = 89.8 bits (48), Expect = 3e-17
Identities = 71/81 (88%), Gaps = 6/81 (7%)
Strand=Plus/Plus
Query 26 TTTCGAATTACATAAATGCCCACAAAGTTCGAAGAGTCAAAC---TA---CTTGTAAACA 79
||||||||||||||||| |||||||||||||||||| |||| || || |||||||
Sbjct 1 TTTCGAATTACATAAATACCCACAAAGTTCGAAGAGCCAAATGAATATAGCTAGTAAACA 60
Query 80 AACAAAACCAAACATTTAATA 100
|||||||||||||||||||||
Sbjct 61 AACAAAACCAAACATTTAATA 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5