BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56080.1 Length=963 Score E Sequences producing significant alignments: (Bits) Value Ahg950262 jgi|Araly1|950262|scaffold_802149.1 1535 0.0 Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1 931 0.0 > Ahg950262 jgi|Araly1|950262|scaffold_802149.1 Length=1006 Score = 1535 bits (831), Expect = 0.0 Identities = 919/963 (95%), Gaps = 0/963 (0%) Strand=Plus/Plus Query 1 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCA 60 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 21 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATCGACTTATACAATCAAATCTCA 80 Query 61 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCC 120 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| Sbjct 81 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCGGACAACTCGTATCC 140 Query 121 ACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAA 180 ||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 141 ACGTGCTTACCTACAGACACAAACATCGATGTCACGGAGATACACGATGAAAAAGTCAAA 200 Query 181 GACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 240 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 GACGCGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 260 Query 241 TTTTCAGCAATCTTAGGCTCTTTTGAAGACAACCCTCTAAACCATTTACACATCTTCCCC 300 |||||| |||||||| ||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 261 TTTTCAACAATCTTAAGCTCTTTTGAAGACAACCCACTAAACCATTTACACATTTTTCCC 320 Query 301 TATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCTATCTCAACACACA 360 ||||||||||||||| |||| ||||| ||||||||||||||||||||| | ||||||||| Sbjct 321 TATTACAACAACTATATCAAGCTAGGAAAACTCGAATTCGATCTCCTAGCACAACACACA 380 Query 361 ACCCATGTCCCGACCAAAGTCGCCTTTATTGGTTCCGGTCCGATGCCACTTACTTCCATC 420 ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct 381 ACCCATGTCCCGACCAAAGTCGCTTTTATCGGTTCGGGTCCGATGCCACTTACATCCATC 440 Query 421 GTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 480 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 441 GTCTTGGCCAAGTTCCATCTTCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 500 Query 481 GCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAACGCATGATT 540 ||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 501 GCCAACACACTCGCTTCAAACCTCGTTTCTCACGATTCTGACCTCTCGAAACGCATGATT 560 Query 541 TTCCACACAACTGATGTATTAAACGCTAAGGAGGGGTTAGACCAATACGATGTTGTTTTC 600 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| Sbjct 561 TTCCACACAACTGATGTGTTAAACGCTAAGGAAGGGTTAGACCAATACGATGTTATTTTC 620 Query 601 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTAGAG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 621 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTGGAG 680 Query 661 AAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 720 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 681 AAGCATATGGCTCCTGGAGCTGTGTTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 740 Query 721 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 800 Query 781 CCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGTTCAAATGGA 840 ||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 801 CCGTCCGATGATGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGGTCAAATGGA 860 Query 841 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCTTGTAATTGCTCTAAGGTCCAC 900 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 861 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCATGTAACTGCTCTAAGGTCCAC 920 Query 901 GCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTATAGTGCCATCGAG 960 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 921 GCGATCATGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTTTAGTGCCATCGAG 980 Query 961 TAA 963 ||| Sbjct 981 TAA 983 > Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1 Length=1228 Score = 931 bits (504), Expect = 0.0 Identities = 828/981 (84%), Gaps = 36/981 (4%) Strand=Plus/Plus Query 1 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCA 60 ||||||||| ||||||| |||||||||||||||||| | ||||||||| | ||||||||| Sbjct 53 ATGGCTTGCCAAAACAATCTCGTTGTGAAGCAAATCGTCGACTTATACGATCAAATCTCA 112 Query 61 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCC 120 || |||| |||||||||||| ||||| |||||||||||||||||| ||||||| |||||| Sbjct 113 AAGCTCGTGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTCGGACAACTCGTGTCC 172 Query 121 ACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAA 180 ||||||||||| ||||| || ||||||||||||||| | ||| | |||| |||||||| Sbjct 173 ACGTGCTTACCCACGGATACAAACATCGATGTCACA-A-ATATGTG-TGAAGAAGTCAAA 229 Query 181 GACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 240 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 TACATGAGATCTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 289 Query 241 TTTTC-AGCAATCTTAGGCTCTTTT---GAAGAC-AA--CCCTCTAAACCATTTACACAT 293 || || | |||| || || ||||| |||||| || ||| || ||||||||||||| Sbjct 290 TTCTCCA-CAATTTTGGGATCTTTACAAGAAGACCAAAACCCACTTCACCATTTACACAT 348 Query 294 CTTCCCCTATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCT-ATCTC 352 ||| || || |||| |||||| ||||| |||||||| ||||| ||||||||||| | || Sbjct 349 CTTTCCTTACTACACCAACTACCTCAAGCTAGGCAAGCTCGAGTTCGATCTCCTGAG-TC 407 Query 353 AACACACAACCCATGTCCCGACCAA-AGTCGCCTTTATTGGTTCCGGTCCGATGCCACTT 411 ||||| ||| ||||||||| ||||| | | ||||| | ||||| ||||||||||| || Sbjct 408 AACACTCAAGCCATGTCCCCACCAAGATT-GCCTTCGTGGGTTCGGGTCCGATGCCTCTC 466 Query 412 ACTTCCATCGTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATC 471 || |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| Sbjct 467 ACATCCATCGTCTTGGCCAAGTTTCACCTCCCGAACACGACCTTCCACAACTTCGACATC 526 Query 472 GACTCACACGCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAA 531 ||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||| || ||| Sbjct 527 GACTCACACGCAAACACACTCGCTTCAAACCTCGTCTCTCGCGATCCGGACCTCTCAAAA 586 Query 532 CGCATGATTTTCCACACAACTGATGTATTAAACGCTAAGGAGGGG-TTAGACCAATACGA 590 |||||||| ||||||||||| || ||| ||||||||| || || || |||||||| || Sbjct 587 CGCATGATCTTCCACACAACGGACGTACTAAACGCTACCGAAGGCCTT-GACCAATATGA 645 Query 591 TGTTGTTTTCTTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGA 650 || ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 646 CGTCGTTTTCTTGGCGGCTCTTGTTGGGATGGACAAAGAGTCAAAGGTCAAAGCCATTGA 705 Query 651 GCATTTAGAGAAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCT 710 ||| || ||||| || ||||||||||||||||| | |||||||| |||||||||| ||| Sbjct 706 GCACTTGGAGAAACACATGGCTCCTGGAGCTGTCCTTATGCTAAGGAGTGCTCATGCTCT 765 Query 711 TAGAGCTTTCTTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAAC 770 ||||||||||| ||||| ||||||||||||| |||||| ||||| ||| || | || || Sbjct 766 CAGAGCTTTCTTATATCCCATCGTTGACTCTTCTGATCTCAAAGGCTTTCAGCTCTTGAC 825 Query 771 CATTTATCATCCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGG 830 ||| |||||||| | || || |||||||| ||||| || |||||||||||||| ||||| Sbjct 826 CATCTATCATCCAACCGATGATGTGGTTAACTCGGTTGTGATCGCACGTAAGCTCGGTGG 885 Query 831 TTCAA--ATGGAGCTCGAGGCAGCCAGATCGG-ACG-GTG--TG--TGGTTATGCCTTGT 882 ||| | | | | | || || | | || || || ||| || || ||||||||||| Sbjct 886 TTCGACCACG-A-C-CG-GG--GTTA-AT-GGTACTCGTGGCTGCATGTTTATGCCTTGT 937 Query 883 AATTGCTCTAAGGTCCACGCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAG 942 || ||||| ||| ||||||||||| ||||||| ||||||| |||||||| | |||||| Sbjct 938 AACTGCTCCAAGATCCACGCGATCATGAACAACCGTGGTA---AGAAGAATATAATCGAG 994 Query 943 GAGTATAGTGCCATCGAGTAA 963 |||| |||||||||||||||| Sbjct 995 GAGTTTAGTGCCATCGAGTAA 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35759296146 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5