BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56080.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950262 jgi|Araly1|950262|scaffold_802149.1 1535 0.0
Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1 931 0.0
> Ahg950262 jgi|Araly1|950262|scaffold_802149.1
Length=1006
Score = 1535 bits (831), Expect = 0.0
Identities = 919/963 (95%), Gaps = 0/963 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 21 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATCGACTTATACAATCAAATCTCA 80
Query 61 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCC 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 81 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCGGACAACTCGTATCC 140
Query 121 ACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAA 180
||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 141 ACGTGCTTACCTACAGACACAAACATCGATGTCACGGAGATACACGATGAAAAAGTCAAA 200
Query 181 GACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GACGCGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 260
Query 241 TTTTCAGCAATCTTAGGCTCTTTTGAAGACAACCCTCTAAACCATTTACACATCTTCCCC 300
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 261 TTTTCAACAATCTTAAGCTCTTTTGAAGACAACCCACTAAACCATTTACACATTTTTCCC 320
Query 301 TATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCTATCTCAACACACA 360
||||||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 321 TATTACAACAACTATATCAAGCTAGGAAAACTCGAATTCGATCTCCTAGCACAACACACA 380
Query 361 ACCCATGTCCCGACCAAAGTCGCCTTTATTGGTTCCGGTCCGATGCCACTTACTTCCATC 420
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 381 ACCCATGTCCCGACCAAAGTCGCTTTTATCGGTTCGGGTCCGATGCCACTTACATCCATC 440
Query 421 GTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 480
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTCTTGGCCAAGTTCCATCTTCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 500
Query 481 GCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAACGCATGATT 540
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 501 GCCAACACACTCGCTTCAAACCTCGTTTCTCACGATTCTGACCTCTCGAAACGCATGATT 560
Query 541 TTCCACACAACTGATGTATTAAACGCTAAGGAGGGGTTAGACCAATACGATGTTGTTTTC 600
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 561 TTCCACACAACTGATGTGTTAAACGCTAAGGAAGGGTTAGACCAATACGATGTTATTTTC 620
Query 601 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTAGAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 621 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTGGAG 680
Query 661 AAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 720
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 681 AAGCATATGGCTCCTGGAGCTGTGTTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 740
Query 721 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 800
Query 781 CCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGTTCAAATGGA 840
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 801 CCGTCCGATGATGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGGTCAAATGGA 860
Query 841 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCTTGTAATTGCTCTAAGGTCCAC 900
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 861 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCATGTAACTGCTCTAAGGTCCAC 920
Query 901 GCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTATAGTGCCATCGAG 960
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 921 GCGATCATGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTTTAGTGCCATCGAG 980
Query 961 TAA 963
|||
Sbjct 981 TAA 983
> Ahg487282 jgi|Araly1|487282|fgenesh2_kg.6__416__AT5G04950.1
Length=1228
Score = 931 bits (504), Expect = 0.0
Identities = 828/981 (84%), Gaps = 36/981 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCA 60
||||||||| ||||||| |||||||||||||||||| | ||||||||| | |||||||||
Sbjct 53 ATGGCTTGCCAAAACAATCTCGTTGTGAAGCAAATCGTCGACTTATACGATCAAATCTCA 112
Query 61 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCC 120
|| |||| |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||
Sbjct 113 AAGCTCGTGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTCGGACAACTCGTGTCC 172
Query 121 ACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAA 180
||||||||||| ||||| || ||||||||||||||| | ||| | |||| ||||||||
Sbjct 173 ACGTGCTTACCCACGGATACAAACATCGATGTCACA-A-ATATGTG-TGAAGAAGTCAAA 229
Query 181 GACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TACATGAGATCTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 289
Query 241 TTTTC-AGCAATCTTAGGCTCTTTT---GAAGAC-AA--CCCTCTAAACCATTTACACAT 293
|| || | |||| || || ||||| |||||| || ||| || |||||||||||||
Sbjct 290 TTCTCCA-CAATTTTGGGATCTTTACAAGAAGACCAAAACCCACTTCACCATTTACACAT 348
Query 294 CTTCCCCTATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCT-ATCTC 352
||| || || |||| |||||| ||||| |||||||| ||||| ||||||||||| | ||
Sbjct 349 CTTTCCTTACTACACCAACTACCTCAAGCTAGGCAAGCTCGAGTTCGATCTCCTGAG-TC 407
Query 353 AACACACAACCCATGTCCCGACCAA-AGTCGCCTTTATTGGTTCCGGTCCGATGCCACTT 411
||||| ||| ||||||||| ||||| | | ||||| | ||||| ||||||||||| ||
Sbjct 408 AACACTCAAGCCATGTCCCCACCAAGATT-GCCTTCGTGGGTTCGGGTCCGATGCCTCTC 466
Query 412 ACTTCCATCGTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATC 471
|| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 467 ACATCCATCGTCTTGGCCAAGTTTCACCTCCCGAACACGACCTTCCACAACTTCGACATC 526
Query 472 GACTCACACGCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAA 531
||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||| || |||
Sbjct 527 GACTCACACGCAAACACACTCGCTTCAAACCTCGTCTCTCGCGATCCGGACCTCTCAAAA 586
Query 532 CGCATGATTTTCCACACAACTGATGTATTAAACGCTAAGGAGGGG-TTAGACCAATACGA 590
|||||||| ||||||||||| || ||| ||||||||| || || || |||||||| ||
Sbjct 587 CGCATGATCTTCCACACAACGGACGTACTAAACGCTACCGAAGGCCTT-GACCAATATGA 645
Query 591 TGTTGTTTTCTTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGA 650
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 646 CGTCGTTTTCTTGGCGGCTCTTGTTGGGATGGACAAAGAGTCAAAGGTCAAAGCCATTGA 705
Query 651 GCATTTAGAGAAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCT 710
||| || ||||| || ||||||||||||||||| | |||||||| |||||||||| |||
Sbjct 706 GCACTTGGAGAAACACATGGCTCCTGGAGCTGTCCTTATGCTAAGGAGTGCTCATGCTCT 765
Query 711 TAGAGCTTTCTTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAAC 770
||||||||||| ||||| ||||||||||||| |||||| ||||| ||| || | || ||
Sbjct 766 CAGAGCTTTCTTATATCCCATCGTTGACTCTTCTGATCTCAAAGGCTTTCAGCTCTTGAC 825
Query 771 CATTTATCATCCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGG 830
||| |||||||| | || || |||||||| ||||| || |||||||||||||| |||||
Sbjct 826 CATCTATCATCCAACCGATGATGTGGTTAACTCGGTTGTGATCGCACGTAAGCTCGGTGG 885
Query 831 TTCAA--ATGGAGCTCGAGGCAGCCAGATCGG-ACG-GTG--TG--TGGTTATGCCTTGT 882
||| | | | | | || || | | || || || ||| || || |||||||||||
Sbjct 886 TTCGACCACG-A-C-CG-GG--GTTA-AT-GGTACTCGTGGCTGCATGTTTATGCCTTGT 937
Query 883 AATTGCTCTAAGGTCCACGCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAG 942
|| ||||| ||| ||||||||||| ||||||| ||||||| |||||||| | ||||||
Sbjct 938 AACTGCTCCAAGATCCACGCGATCATGAACAACCGTGGTA---AGAAGAATATAATCGAG 994
Query 943 GAGTATAGTGCCATCGAGTAA 963
|||| ||||||||||||||||
Sbjct 995 GAGTTTAGTGCCATCGAGTAA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5