BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56100.1
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950264 jgi|Araly1|950264|scaffold_802151.1 641 0.0
Ahg950267 jgi|Araly1|950267|scaffold_802154.1 634 0.0
Ahg925695 jgi|Araly1|925695|scaffold_201256.1 623 5e-178
> Ahg950264 jgi|Araly1|950264|scaffold_802151.1
Length=479
Score = 641 bits (347), Expect = 0.0
Identities = 403/430 (94%), Gaps = 3/430 (1%)
Strand=Plus/Plus
Query 1 ACTACTATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAA 60
|||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 21 ACTAGTATGGAGAATCATGGAGG-A--AGAAGAAGAGACATAGCCATAACCGATGGAGAA 77
Query 61 AGAACGACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCG 120
|| | ||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 78 AGGAGGACTGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTAGCAGTGGTCGGGCCG 137
Query 121 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 197
Query 181 CCATTGCTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCT 240
||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| |||||
Sbjct 198 CCATTGCTGCTGACATTTGCTCCAGTTTTTATGGTGATGGTAGCGGTTCTTGTGGCGGCT 257
Query 241 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 258 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGT 317
Query 301 TGTGGCCGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTG 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 318 TGTGGCCGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTTGTG 377
Query 361 AGAGAATTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCA 420
|||||||||||||| ||||||||||||||||| ||| ||||||||||| || | |||||
Sbjct 378 AGAGAATTAGGTTATGGTCGGAGTCGTTACTTACGAAACAAATCAGAGTATGGCTATTCT 437
Query 421 ACTTCTTCTC 430
|||||||||
Sbjct 438 TCTTCTTCTC 447
> Ahg950267 jgi|Araly1|950267|scaffold_802154.1
Length=476
Score = 634 bits (343), Expect = 0.0
Identities = 402/430 (93%), Gaps = 6/430 (1%)
Strand=Plus/Plus
Query 1 ACTACTATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAA 60
|||| ||||||||||| | || | | ||||||||||||||||||||||||||||||||
Sbjct 21 ACTAGTATGGAGAATCAT---GG-A-G-GAAGAAGAGACATAGCCATAACCGATGGAGAA 74
Query 61 AGAACGACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCG 120
|| | ||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 75 AGGAGGACTGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTAGCAGTGGTCGGGCCG 134
Query 121 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT 194
Query 181 CCATTGCTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCT 240
||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| |||||
Sbjct 195 CCATTGCTGCTGACATTTGCTCCAGTTTTTATGGTGATGGTAGCGGTTCTTGTGGCGGCT 254
Query 241 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 255 ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGT 314
Query 301 TGTGGCCGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTG 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 315 TGTGGCCGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTTGTG 374
Query 361 AGAGAATTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCA 420
|||||||||||||| ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 375 AGAGAATTAGGTTATGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCT 434
Query 421 ACTTCTTCTC 430
|||||||||
Sbjct 435 TCTTCTTCTC 444
> Ahg925695 jgi|Araly1|925695|scaffold_201256.1
Length=446
Score = 623 bits (337), Expect = 5e-178
Identities = 393/420 (94%), Gaps = 4/420 (1%)
Strand=Plus/Plus
Query 7 ATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAAAGAACG 66
|||||||||| |||||| | ||| ||||| ||||||||||||||||||||||||| | |
Sbjct 1 ATGGAGAATCATGGAGG-A--AGATGAAGAAACATAGCCATAACCGATGGAGAAAGGAGG 57
Query 67 ACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCGCTTTTT 126
|| ||||||||| ||||||||||||||||| ||||||| |||||||| || |||||||||
Sbjct 58 ACTGGTTCTTCGATTGTGGCTGCAACCGTAACAGCTGTAGCAGTGGTCGGGCCGCTTTTT 117
Query 127 GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCTCCATTG 177
Query 187 CTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCTATGGTT 246
||||||||||||||||||| ||||||||| |||||||||||||||||| | || ||||||
Sbjct 178 CTGCTGATATTTGCTCCAG-TTTTATGGTGACGGTAGCGGTTCTTGTGGCAGCAATGGTT 236
Query 247 GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGTTGTGGC 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 237 GGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGTTGTGGC 296
Query 307 CGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAA 366
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTGGTGAGAGAG 356
Query 367 TTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCAACTTCT 426
|||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||
Sbjct 357 TTAGGTTACGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCTTCTTCT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23331225204
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5