BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56110.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331925 jgi|Araly1|331925|fgenesh1_pm.C_scaffold_8001268 1496 0.0
Ahg917298 jgi|Araly1|917298|Al_scaffold_0008_2049 660 0.0
> Ahg331925 jgi|Araly1|331925|fgenesh1_pm.C_scaffold_8001268
Length=975
Score = 1496 bits (810), Expect = 0.0
Identities = 923/976 (95%), Gaps = 14/976 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
Query 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
Query 121 CCTAAGAATGCTGGGTTGCAAAGATGTGGGAAGAGTTGTAGGCTGCGATGGACAAACTAT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCTAAGAACGCTGGGTTGCAAAGATGCGGGAAGAGTTGTAGGCTGCGATGGACGAACTAT 180
Query 181 CTGCGTCCGGATTTGAAACATGGCCAGTTCTCGGAGGCTGAAGAACATATCATTGTCAAG 240
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 TTGCGTCCGGATTTGAAACACGGCCAGTTCTCGGAGACTGAGGAACATATCATTGTCAAG 240
Query 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGGACA 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGGGCAACTTCCTGGTCGAACG 300
Query 301 GACAACGATGTGAAAAATTATTGGAACACGAAGCTGAAGAAGAAGTTGTCAGGAATGGGA 360
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GACAACGATGTGAAAAACTATTGGAACACGAAGCTGAAGAAGAAGTTGTCGGGAATGGGA 360
Query 361 ATAGATCCGGTGACCCACAAGCCTTTCTCGCATCTAATGGCAGAGATCACCACTACACTT 420
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAGATCCAGTTACCCACAAGCCTTTCTCGCATCTAATGGCAGAGATCACCACTACACTT 420
Query 421 AATCCTCCTCAGGTTTCTCACCTAGCCGAAGCTGCCCTCGGCTGTTTCAAGGACGAGATG 480
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 AATCCTCCTCAGGTTTCTCACCTCGCCGAAGCTGCTCTCGGCTGTTTCAAGGACGAGATG 480
Query 481 CTTCACTTGCTCACCAAGAAACGTGTTGACCTAAACCAAATCAACTTTTCAAACCATAAC 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTCACTTGCTTACCAAGAAACGTGTTGACCTAAACCAAATCAACTTCTCAAACCATAAC 540
Query 541 CCTAAC-C---C--AAACAACTTTCACGAGATTGCTGATAATGAAGCTGGTAAGATAAAG 594
|||||| | | |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 CCTAACGCTAACCCAAACAACTTTAACCAGATTGCTGATAATGAAGCTGGTAAGATAAAG 600
Query 595 ATG-GATGGTTTGGACCATGGGAATGGGATAATGAAGTTATGGGACATGGGTAATGGATT 653
||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 ATGAG-TGGTTTGGACCATGGGAATGGGATAATGAAACTATGGGACATGGGTAATGGATT 659
Query 654 CTCATATGGATCCTCTTCGTCTTCGTTTGGGAATGAAGAAAGAAATGATGGATCAGCGTC 713
||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||
Sbjct 660 CTCGTATGGATCCTCTTCGTCGTCGTTTGGAAATGAAGAAAGGAATGATGGATCGGCGTC 719
Query 714 TCCTGCCGTTGCAGCTTGGAGGGGTCACGGAGGAATACGTACCGCGGTAGCTGAAACCGC 773
|||||||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 720 TCCTGCCGTTGCGGCTTGGAGAGGTCACGGAGGGATACGTACGGCGGTGGCTGAAACCGC 779
Query 774 GGCAGCGGAGGAGGAGGAGAGAAGGAAGCTGAAGGGAGAAGTGGTTGATCAAGAGGAGAT 833
||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGCGGCCGAGGAAGAGGAGAGGAGGAAGCTGAAGGGAGAAGTGGTTGATCAAGAGGAGAT 839
Query 834 TGGATCTGAAGGAGGAAGAGGAGATGGAATGACGATGATGA-G-G-AACCATCATCATCA 890
|||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| ||
Sbjct 840 TGGATCTGAAGGAGGAAGAGGAGATGGAATGATGATGATGATGAGGAACCATCATCAACA 899
Query 891 TCAACA---TGTGTTTAATGTGGATAATGTCTTGTGGGATTTACAAGCTGATGATCTCAT 947
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACAACAACATGTGTTTAATGTGGATAATGTCTTGTGGGATTTACAAGCTGATGATCTCAT 959
Query 948 CAATCATATGGTTTGA 963
||||||||||||||||
Sbjct 960 CAATCATATGGTTTGA 975
> Ahg917298 jgi|Araly1|917298|Al_scaffold_0008_2049
Length=1224
Score = 660 bits (357), Expect = 0.0
Identities = 385/399 (96%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
Query 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
Query 121 CCTAAGAATGCTGGGTTGCAAAGATGTGGGAAGAGTTGTAGGCTGCGATGGACAAACTAT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCTAAGAACGCTGGGTTGCAAAGATGCGGGAAGAGTTGTAGGCTGCGATGGACGAACTAT 180
Query 181 CTGCGTCCGGATTTGAAACATGGCCAGTTCTCGGAGGCTGAAGAACATATCATTGTCAAG 240
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 TTGCGTCCGGATTTGAAACACGGCCAGTTCTCGGAGACTGAGGAACATATCATTGTCAAG 240
Query 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGGACA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGAACG 300
Query 301 GACAACGATGTGAAAAATTATTGGAACACGAAGCTGAAGAAGAAGTTGTCAGGAATGGGA 360
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GACAACGATGTGAAAAACTATTGGAACACGAAGCTGAAGAAGAAGTTGTCGGGAATGGGA 360
Query 361 ATAGATCCGGTGACCCACAAGCCTTTCTCGCATCTAATG 399
|||||||| |||||||||||||||| |||||||| ||||
Sbjct 361 ATAGATCCAGTGACCCACAAGCCTTCCTCGCATCGAATG 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5