BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56120.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495698 jgi|Araly1|495698|fgenesh2_kg.8__1514__AT5G56120.1 1587 0.0
> Ahg495698 jgi|Araly1|495698|fgenesh2_kg.8__1514__AT5G56120.1
Length=1110
Score = 1587 bits (859), Expect = 0.0
Identities = 1010/1082 (93%), Gaps = 14/1082 (1%)
Strand=Plus/Plus
Query 32 TCAATCTTCATCTTACTCTCTAATTGCTTTCCTA-TTCCGATCTCTGTTTCTTCATAAAG 90
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 1 TCAATCTTCATCTTACTCTCTAATTGCTTTCC-ATTTCTGATCTCTGTTTCTTCATAAAG 59
Query 91 TCTCAATCttttttttCTCTATGGCCGGAACTAAAGATTCTCATGTAGTGGAGATTCCAG 150
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 60 TCTCAATC-TTTTTTTCTCTATGGCCGGAACTAAAGATTCGCATGTAGTGGAGATTCCGG 118
Query 151 TAGATGAAGAGCATAAAGAGAGACAACAACAACAACAGTTGGTTGCGGTCTCAAATCCGG 210
||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||
Sbjct 119 TAGATGAAGAGCATAAAGA-A-A-GACAACAACAACAGTTGGTTGCGGTCTCGAATCCGG 175
Query 211 GAATGGGAATACTCAAAGTGATTCAGCAGCATCCGTTGTCTGAAATCTCAGAGAGTCCAG 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAATGGGAATACTCAAAGTGATTCAGCAGCATCCGTTGTCTGAAATCTCAGAGAGTCCAG 235
Query 271 GACATTTGTTGCTTTTGAAGTTATGGCAAAGAGAAGAAGATTTGTTCTGTCGTCGTGTTC 330
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 236 GACATTTGTTGCTTTTGAAGCTATGGCAGAGAGAAGAAGATTTGTTCTGTCGTCGTGTCC 295
Query 331 TTCTTAAAGAATCAAGACTAGAGTCAATCAAAAGAGAGATCTTTCAGCTttgttgtttct 390
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 296 TACTTAAAGAATCGAGGCTAGAGTCAATCAAAAGAGAGATCTTTCAGCTTTGCTGTTTCT 355
Query 391 tcctagtcttccatgggttcttcttcacacttgtctactcttcttcttgttctGATGATG 450
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 356 TCCTCGTCTTCCACGGGTTTTTCTTCACACTTGTCTACTCTTCTTCTTGTTCTGATGACG 415
Query 451 CTGACGTGGTGAAAAGTAATGCGGTTTGCAAGAAATGGTGGATACCTTCTGCAGTGTCAT 510
||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 ATGAAGTAGTGAAAAGCAATGCGGTTTGCAAGAAATGGTGGATACCTTCTGCGGTGTCAC 475
Query 511 TAGCTACTTCATTGGTTCTGGTGTTTCTTGTTCAAGCTAAGCTGTTTGTGTTCTGGAAAG 570
||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||
Sbjct 476 TAGCTACTTCATTGGTTTTGGTGTTTCTGGTTCAGGTTAAGCTGTTTGTGTTCTGGAAAG 535
Query 571 TTTACAGAGGTGTTAATAGGGAGAGGAATGATAATAGAACGCTTACACGGTGTGTTTTGG 630
|||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 536 TTTACAGAGGAGTTCATAGGGAGAGGAATGGTAACAGAACGCTTACACGGTGTGTTTTGG 595
Query 631 AGTTGAGGATGAAAGGGTCGAGCTTTGATTTGTCGAAAGAGCCGATGAGTGGGAAGAGGA 690
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 AGTTGAGGATGAAAGGGTCGAGCTTTGATTTGTCGAAAGAGCCCATGAGTGGGAAGAGGA 655
Query 691 TGAAGAGTTCAAGCGTTGAGATCAAGTGGAAACCTGTTACTTGGTTCTCTCAGTATTTGA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGAAGAGTTCAAGCGTTGAGATCAAGTGGAAACCTGTTACTTGGTTCTCTCAGTATTTGA 715
Query 751 TAACTATTGTTCTTCTTTGCTCTGCAGGGTTGTTCTTCCCGGTCTCAAAGTTCATCCTCT 810
| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 716 TCACCATTGTTCTTCTTTGCTTTGCAGGGTTGTTCTTCCCGGTCTCAAAGTTCATACTCT 775
Query 811 GCGGATTTTGACAAACTCTTCCTATTCACTGTTTGTTCGGACTCTGCATTCTTTCTTCAA 870
|||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||
Sbjct 776 GCGGATTTTGACAAACTCTTGCTATTCATTGTTTGTTTGGACTCTGCATCCTTTCTTCAG 835
Query 871 CCTTCATTGTGGGGATGATGCTTTTGGTCCGATCTTACCATTGGCCTCTGTTCTAGCTTT 930
||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 836 CCTCCATTGTGGGGATGAAGCTTTTGGTCCGATC--A---TTGGCCTCTGTTCTAGCTTC 890
Query 931 GAGAGAGTAGCTGTCAAATCTCCCAGACTGAAGATTCGCCGGAGGGAATAAGAACAACCT 990
|||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 891 GAGAGAGTAGCTGTCAAATCTCCCAGACTGAAGAATCGCCGGAGGGCCTAATAACAACCT 950
Query 991 GTAACTTTTAGCAGTACTCACACATAGTAGAAAATTGATGTAATTCGGGATTAGAATTCT 1050
|||||||||||||||||||| |||||||||| ||||||||||| || | || ||||||||
Sbjct 951 GTAACTTTTAGCAGTACTCATACATAGTAGAGAATTGATGTAACTCAGAATCAGAATTCT 1010
Query 1051 GATCTTGATCTTATT-AATTTCATTCTTCGTTAATAATAAACAACAT-TGCTTGTATAGT 1108
||||||||| ||||| ||||||||| |||||| |||||||| |||| | ||||||||||
Sbjct 1011 GATCTTGATATTATTTAATTTCATTATTCGTTTATAATAAAGAACACAT-CTTGTATAGT 1069
Query 1109 AA 1110
||
Sbjct 1070 AA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5