BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56130.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950270 jgi|Araly1|950270|scaffold_802157.1 1661 0.0
Ahg901363 jgi|Araly1|901363|Al_scaffold_0004_2013 165 7e-40
> Ahg950270 jgi|Araly1|950270|scaffold_802157.1
Length=988
Score = 1661 bits (899), Expect = 0.0
Identities = 957/985 (97%), Gaps = 3/985 (0%)
Strand=Plus/Plus
Query 11 GAAGAGTTGAGAATTAAAAAATGGAGGAGACGACGATTCCTTTCAAGAGCTTACATAGCA 70
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAAG-GTTGAGAA--CAAAAATGGAGGAGACGACGATTCCTTTCAAGAGCTTACATAGCA 60
Query 71 GAGAATATCAAGGTCATAAGAAGAAGGTACATTCAGTAGCTTGGAATTCGAATGGAACAA 130
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 61 GAGAATATCAAGGTCACAAGAAGAAGGTACATTCTGTAGCTTGGAATTCTAATGGAACAA 120
Query 131 AGCTTGCTTCGGGTTCTGTTGATCAAACGGCTCGCATTTGGAATATCGAACCACACGGTC 190
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 121 AGCTTGCTTCGGGTTCTGTTGATCAAACGGCTCGCATTTGGAACATTGAACCTCACGGTC 180
Query 191 ATAGCAAGGCTAAGGACCTTGAGCTAAAGGGTCATACTGATAGTGTGGATCAGCTATGTT 250
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATAGTAAGGCTAAGGACCTTGAACTAAAGGGACATACTGATAGTGTGGATCAGCTATGTT 240
Query 251 GGGATCCCAAACATTCAGATCTTGTTGCTACTGCCTCTGGTGATAAAAGCGTTCGTCTTT 310
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GGGACCCCAAACATTCAGATCTTGTTGCTACTGCCTCTGGTGATAAAAGCGTTCGTCTCT 300
Query 311 GGGATGCTCGCAGTGGAAAATGCACACAGCAGGTAGAACTTAGTGGAGAGAATATAAACA 370
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GGGATGCTCGCAGTGGAAAATGCACACAGCAGGCCGAACTTAGTGGAGAGAATATAAACA 360
Query 371 TCACCTACAAACCTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAGCTTACAA 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TCACCTACAAACCTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAGCTTACCA 420
Query 431 TTCTGGATGTCCGTAAGTTTAAACCTCTACACAGGCGCAAATTCAATTATGAGGTTAATG 490
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 TTCTGGATGTCCGTAAGTTTAAACCTCTACACAGACGCAAATTCAATTATGAGGTTAATG 480
Query 491 AGATTGCTTGGAACATGCCTGGAGATTTTTTCTTCTTGACTACTGGACTTGGCACTGTTG 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGATTGCTTGGAACATGCCAGGAGATTTTTTCTTCTTGACTACTGGACTTGGCACTGTTG 540
Query 551 AAGTTCTTTCATATCCATCTCTTAAACCACTTGACACTCTCACAGCCCACACAGCCGGGT 610
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGTTCTTTCATATCCGTCTCTTAAACCACTTGACACTCTCACAGCCCACACAGCCGGGT 600
Query 611 GTTATTGTATTGCAATTGATCCTAAAGGGAGATATTTTGCTGTCGGGAGTGCGGATTCCT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTATTGTATTGCAATTGATCCTAAAGGGAGATATTTTGCTGTCGGGAGTGCGGATTCCT 660
Query 671 TAGTAAGCCTTTGGGATATCTCAGACATGCTTTGTTTGAGAACATTTACCAAACTTGAGT 730
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAGTCAGCCTTTGGGATATCTCAGACATGCTTTGTTTGAGAACATTTACCAAACTTGAGT 720
Query 731 GGCCAGTCAGAACAATAAGCTTCAACTATTCGGGAGAGTATATTGCTTCAGCCAGTGAAG 790
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCCCGTCAGAACAATAAGCTTCAACTATTCGGGAGAGTATATTGCTTCAGCCAGTGAAG 780
Query 791 ATTTATTCATTGATATTGCTAATGTCCAAACCGGGCGGACGGTGCATCAGATTCCATGTC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTTATTCATTGATATTGCTAATGTCCAAACCGGGCGGACGGTGCATCAGATTCCATGTC 840
Query 851 GGGCAGCCATGAACAGTGTTGAGTGGAATCCCAAATACAATTTACTTGCATATGCAGGTG 910
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGGCTGCCATGAACAGTGTCGAGTGGAATCCCAAATACAATTTACTTGCATATGCAGGTG 900
Query 911 ATGACAAGAATCCCAAGTATAATACTGATGAAGGTGTTTTCCGGATATTTGGTTTTGAGA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGACAAGAATCCCAAGTATAATACTGATGAAGGTGTTTTCCGGATATTTGGTTTTGAGA 960
Query 971 GCTCGTAGGAACAGAGCACTGAATC 995
|||||||| |||||| ||||| |||
Sbjct 961 GCTCGTAGAAACAGAACACTGCATC 985
> Ahg901363 jgi|Araly1|901363|Al_scaffold_0004_2013
Length=216
Score = 165 bits (89), Expect = 7e-40
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 323 GTGGAAAATGCACACAGCAGGTAGAACTTAGTGGAGAGAATATAAACATCACCTACAAAC 382
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 23 GTGGAAAATGCACACAGCAGGCAGAACTTAGTGGAGAGAATATAAATATCACCTACAAAC 82
Query 383 CTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAG 423
||||||||||||||||||||||||||||||||| | |||||
Sbjct 83 CTGACGGGACACATGTAGCTGTTGGTAATAGGGTTAATGAG 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5