BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56140.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495700 jgi|Araly1|495700|fgenesh2_kg.8__1516__AT5G56140.1 2060 0.0
Ahg492164 jgi|Araly1|492164|fgenesh2_kg.7__1597__AT4G26480.1 976 0.0
> Ahg495700 jgi|Araly1|495700|fgenesh2_kg.8__1516__AT5G56140.1
Length=1418
Score = 2060 bits (1115), Expect = 0.0
Identities = 1344/1447 (93%), Gaps = 46/1447 (3%)
Strand=Plus/Plus
Query 16 AGCTTTGGTTCTGCCTCCGCCGcttcttcttcttcttctAATCTCCGACAGATTTACTCT 75
||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 1 AGCTTTGGTTCTGACTCCGCCG---CTGCTTCTTCTTCTAATCTCCGACAGATTTGCTCT 57
Query 76 GATT-C---TG----TTGTCTTCGAGATGATGATGATGTCGTCGCTtggtggtggtggtg 127
|||| | || || ||||||||||||||||||||||||| | | |||||||||||
Sbjct 58 GATTCCTTGTGAATATTTTCTTCGAGATGATGATGATGTCGTCTC-T--TGGTGGTGGTG 114
Query 128 gtggaggaggaggaagtggtggtggtattggtggtggcggcggagggaggtTTATGACGT 187
||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||
Sbjct 115 GTGGAGGAGGAGGAA---GTGG-GG--TTGGTGGTGGCGGAGGAGGGAGGTTTATGACGT 168
Query 188 ATTCGTCGTCTCTTTCGGTGCCTCCTTCTGCTCCTCAGTCTCCTAATTACTCCGGTGGTC 247
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 169 ATTCGTCGTCTCTTTCGGTTCCTCCTTCTGCTCCTCAGTCTCCTAATTACTCTGGTGGTC 228
Query 248 TCCGATCACAGTCTTCTGTCTTCGTTGAGCAAGAGAAGTATCTTTCAGAGTTACTTGCAG 307
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 229 TCCGATCACAGTCTTCTGTCTTCGCTGAGCAAGAGAAGTATCTTTCAGAGTTACTTGCAG 288
Query 308 AGCGTCATAAGCTTACTCCATTCCTGCCTGTGCTTCCACATGCATTTCGGCTACTAAACC 367
||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||
Sbjct 289 AGCGTCATAAGCTTACTCCATTCCTACCTGTGCTTCCACACGCATATCGCCTACTAAACC 348
Query 368 AAGAAATTTTGCGTGTAAC-CAC-ACTG-TTGGAGA-ATGCT-ACAGTTTTAAGTCAGAG 422
||| ||| | ||| ||| |||| | |||| | || | |||||||||||||
Sbjct 349 AAG-----TTG-AT-AAACACACTACTGCTAAGAGAGA-CCTAATTTTTTTAAGTCAGAG 400
Query 423 TGGGCTTGACCACCCTAGCCCTCTGGCTTCTGGAGGGATATTTCAGAATGCAAGAGCTGA 482
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 401 TGGGCTTGACCACCCTGGCCCTCTGGCTTCAGGAGGGATATTTCAGAATGCAAGAGCTGA 460
Query 483 CATGAATGGATGGGCCTCCCAGTTTCCATCAGAAAGATCTGTTCCATCATCTCCGGGACC 542
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CATGAACGGATGGGCCTCACAGTTTCCATCAGAAAGATCTGTTCCATCATCTCCGGGACC 520
Query 543 AAATTGGCTTAACTCACCTGGTAGTTCGTCCGGTCTCATCGCCAAGCGTACAATCAGGGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AAATTGGCTTAACTCACCTGGTAGTTCGTCCGGTCTCATCGCCAAGCGTACAATCAGGGT 580
Query 603 CGATATTCCAGTCGACAATTATCCGAATTTCAATTTTGTTGGTCGCCTCCTGGGTCCTAG 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TGATATTCCAGTCGACAATTATCCGAATTTCAATTTTGTTGGTCGCCTCCTGGGTCCTAG 640
Query 663 AGGAAACTCCCTGAAGCGAGTTGAAGCAAGTACTGATTGCCGTGTTCTTATAAGAGGAAG 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 641 AGGAAACTCCCTGAAGCGAGTTGAAGCAAGTACTGATTGCCGTGTTCTTATAAGGGGAAG 700
Query 723 AGGAAGTATAAAAGATCCAATTAAGGAGGAAATGATGAGAGGAAAACCGGGATACGAGCA 782
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 701 AGGCAGTATAAAAGATCCAATTAAGGAGGAAATGATGAGAGGAAAACCAGGATACGAGCA 760
Query 783 CCTAAATGAACCACTTCATATCTTAGTGGAAGCAGAATTACCGATTGAAATAGTCGATGC 842
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 761 CCTAAATGAACCACTTCATATCTTAGTTGAAGCAGAATTACCGATTGAAATAGTCGATGC 820
Query 843 ACGGCTCATGCAAGCTCGGGAAATACTTGACGATCTTCTTACTCCTATGGAGGAAACCCA 902
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ACGTCTCATGCAAGCTCGCGAAATACTTGACGATCTTCTTACTCCTATGGAGGAAACCCA 880
Query 903 TGATATGTACAAGAAACAACAGCTGCGCGAGCTAGCATTGCTCAATGGAACTCTTCGTGA 962
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 881 TGATTTGTACAAGAAACAACAGCTGCGCGAGCTAGCATTACTCAATGGAACTCTTCGCGA 940
Query 963 AGAAGGATCTCCAATGTCCGGTTCTGTTTCTCCTTACAATAGCCTTGGTATGAAGAGAGC 1022
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 941 AGAAGGATCTCCAATGTCCGGCTCTGTTTCTCCTTACAATAGCCTTGGTATGAAGAGAGC 1000
Query 1023 CAAAACAAGAGAAGGGTAAAAACCATCGAACAGTTTGGCTGTGATCATAAAGCAATATGA 1082
|||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 1001 CAAAACAAGAGAAGGGTAAAAATCATCGAACATTTTGGTTGTGATCATAAAGCAATATGA 1060
Query 1083 AACCGATCCAAAAGTCGACACAAAAAGGCCATACCACTCTTGACGACACGGTACTGTCTC 1142
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1061 AACCGATCCAAAATTCGACACAGAAAGGCCATACCACTCTTGACGACACGGTACTGTCTC 1120
Query 1143 TTGTCCTTGGGGTAGAAATGTTGTATATATGATTTATGAAATGTGTTTGTCAGTCTATGT 1202
|||||| |||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1121 TTGTCCCTGGGATAGAATTGTTGTATATATGATTT--GAAATGTGTTTGTCTGTCTATTT 1178
Query 1203 ATCATTGTCCCGGAGAGAGATCAGATGACAAAA-TTGCAACGGAAACACAAGAGCTGATG 1261
||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||
Sbjct 1179 ATCATTGTCCCGGAGAGAGATCAGATGACAAAAATTTCAA-GGAAATACAAGAGCTGATT 1237
Query 1262 AGTCTCTGTCTCTCTCCGAGACTTTGAttttgtttttgtttatgtttttatgtctggaaa 1321
|||||||||||||||||||||||||| |||||||| |||||| | ||||||||||
Sbjct 1238 AGTCTCTGTCTCTCTCCGAGACTTTGGGTTTGTTTT-----ATGTTTCTCTGTCTGGAAA 1292
Query 1322 gttgggttccaacagttttctttta-a-gtt-ttttgtttatttgttgttttAGCAAAAA 1378
||||||||||||||||||||||||| | | | |||| ||| ||| || ||||||||||||
Sbjct 1293 GTTGGGTTCCAACAGTTTTCTTTTATAAGCTCTTTT-TTTGTTTATTATTTTAGCAAAAA 1351
Query 1379 GAAAACATTAAATCATGATGATGGTTTGTGTCTGGTATTGGTAATGATAATAATCATAAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GAAAACATTAAATCATGATGATGGTTTGTGTCTGGTATTGGTAATGATAATAATCATAAT 1411
Query 1439 ATGTTTT 1445
|||||||
Sbjct 1412 ATGTTTT 1418
> Ahg492164 jgi|Araly1|492164|fgenesh2_kg.7__1597__AT4G26480.1
Length=1698
Score = 976 bits (528), Expect = 0.0
Identities = 766/881 (87%), Gaps = 16/881 (2%)
Strand=Plus/Plus
Query 156 tggtggtggcggcggagggaggtTTATGACGTATTCGTCGTCTCTTTCGGTGCCTCCTTC 215
||||||||| || || ||||| ||| || ||||| || || ||||||| |||||||| ||
Sbjct 822 TGGTGGTGGTGGTGGTGGGAGATTTGTGCCGTATCCGCCGCCTCTTTCTGTGCCTCCGTC 881
Query 216 TGCTCCTCAGTCTCCTAA-TTACTCCGGTGGTCTCCGATCACAGTCTTCTGTCTTCGTTG 274
||||||||||| ||||| || ||| |||||||||||||||||| ||||| || ||||||
Sbjct 882 GGCTCCTCAGTCACCTAACTT-CTCTGGTGGTCTCCGATCACAGCCTTCTTTCCTCGTTG 940
Query 275 AGCAAGAGAAGTATCTTTCAGAGTTACTTGCAGAGCGTCATAAGCTTACTCCATTCCTGC 334
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 941 AGCAAGAGAAGTATCTTTCTGAGTTACTTGCAGAGCGTCACAAGCTTACTCCATTTTTGC 1000
Query 335 CTGTGCTTCCACATGCATTT--CGGCTAC-TAAACCAAGAAATTTTGCGTGTAACCACAC 391
||||||||||||||| ||| ||||| | | |||||||||||||||||||||||||| |
Sbjct 1001 CTGTGCTTCCACATG--TTTGCCGGCT-CATGAACCAAGAAATTTTGCGTGTAACCACGC 1057
Query 392 TGTTGGAGAATGCTACAGTTTTAAGTCAGAGTGGGCTTGACCACCCTAGCCCTCTGGCTT 451
||||||||||||| | |||||||||||| || |||| |||||||||||||||||||
Sbjct 1058 TGTTGGAGAATGC--C----TTAAGTCAGAGTAGGTTTGATCACCCTAGCCCTCTGGCTT 1111
Query 452 CTGGAGGGATATTTCAGAATGCAAGAGCTGACATGAATGGATGGGCCTCCCAGTTTCCAT 511
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1112 CTGGAGGGATATTTCAGAATGCAAGAGCTGACATGAACGGATGGGCCTCACAATTTCCAT 1171
Query 512 CAGAAAGATCTGTTCCATCATCTCCGGGACCAAATTGGCTTAACTCACCTGGTAGTTCGT 571
|||||||||||||| ||||||| || | |||||||||||||||||| |||||||| ||||
Sbjct 1172 CAGAAAGATCTGTTTCATCATCCCCAGCACCAAATTGGCTTAACTCTCCTGGTAGCTCGT 1231
Query 572 CCGGTCTCATCGCCAAGCGTACAATCAGGGTCGATATTCCAGTCGACAATTATCCGAATT 631
|||||||||| | |||||| ||||||||||| ||||||||||| ||||| || || || |
Sbjct 1232 CCGGTCTCATTGTCAAGCGAACAATCAGGGTGGATATTCCAGTTGACAAATACCCAAACT 1291
Query 632 TCAATTTTGTTGGTCGCCTCCTGGGTCCTAGAGGAAACTCCCTGAAGCGAGTTGAAGCAA 691
||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| |
Sbjct 1292 ACAATTTTGTCGGTCGCCTCTTGGGTCCTAGAGGAAACTCCCTCAAACGAGTTGAAGCGA 1351
Query 692 GTACTGATTGCCGTGTTCTTATAAGAGGAAGAGGAAGTATAAAAGATCCAATTAAGGAGG 751
|||||||||| |||||||| ||||| || ||||| || || |||||||| ||||||||||
Sbjct 1352 GTACTGATTGTCGTGTTCTAATAAGGGGTAGAGGCAGCATTAAAGATCCGATTAAGGAGG 1411
Query 752 AAATGATGAGAGGAAAACCGGGATACGAGCACCTAAATGAACCACTTCATATCTTAGTGG 811
||||||||||||| ||||| || || |||||||| ||||||||||| || |||||||| |
Sbjct 1412 AAATGATGAGAGGGAAACCTGGTTATGAGCACCTCAATGAACCACTCCACATCTTAGTCG 1471
Query 812 AAGCAGAATTACCGATTGAAATAGTCGATGCACGGCTCATGCAAGCTCGGGAAATACTTG 871
| ||||||||||| ||||||||||| || ||||| ||||||||||| || |||||||| |
Sbjct 1472 AGGCAGAATTACCCATTGAAATAGTGGACGCACGTCTCATGCAAGCCCGTGAAATACTCG 1531
Query 872 ACGATCTTCTTACTCCTATGGAGGAAACCCATGATATGTACAAGAAACAACAGCTGCGCG 931
||||||| |||||||| ||||||||||||||||| | |||||||||||||| || || |
Sbjct 1532 ACGATCTACTTACTCCCGTGGAGGAAACCCATGATTTCTACAAGAAACAACAACTACGGG 1591
Query 932 AGCTAGCA-TTGCTCAATGGAACTCTTCGTGAAGAAGGATCTCCAATGTCCGGTTCTGTT 990
| | || || || ||||| | |||||| |||||||||||||||||||| ||||| |
Sbjct 1592 AATTGGCGCTT-CTTAATGGTAGTCTTCGAGAAGAAGGATCTCCAATGTCTGGTTCCATC 1650
Query 991 TCTCCTTACAATAGCCTTGGTATGAAGAGAGCCAAAACAAG 1031
|| |||||||||||||| || ||||||||||| || |||||
Sbjct 1651 TCACCTTACAATAGCCTCGGGATGAAGAGAGCTAAGACAAG 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5